HEADER PLANT PROTEIN 30-NOV-11 3VLA TITLE CRYSTAL STRUCTURE OF EDGP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EDGP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DAUCUS CAROTA; SOURCE 3 ORGANISM_COMMON: CARROT; SOURCE 4 ORGANISM_TAXID: 4039; SOURCE 5 GENE: EDGP1; SOURCE 6 EXPRESSION_SYSTEM: DAUCUS CAROTA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CARROT; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_CELL: CARROT CALLUS CELL KEYWDS EXTRACELLULAR, INHIBITOR, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.YOSHIZAWA,T.SHIMIZU,H.HIRANO,M.SATO,H.HASHIMOTO REVDAT 5 29-JUL-20 3VLA 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 25-DEC-19 3VLA 1 SEQADV SEQRES LINK REVDAT 3 14-AUG-13 3VLA 1 JRNL REVDAT 2 25-APR-12 3VLA 1 JRNL MODRES REVDAT 1 18-APR-12 3VLA 0 JRNL AUTH T.YOSHIZAWA,T.SHIMIZU,H.HIRANO,M.SATO,H.HASHIMOTO JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF XYLOGLUCAN-SPECIFIC JRNL TITL 2 ENDO-BETA-1,4-GLUCANASE (XEG) BY XEG-PROTEIN INHIBITOR JRNL REF J.BIOL.CHEM. V. 287 18710 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22496365 JRNL DOI 10.1074/JBC.M112.350520 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 239679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 842 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 672 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.011 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3255 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2140 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4471 ; 1.776 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5248 ; 1.045 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.265 ;24.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;10.616 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3625 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 634 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5394 ; 3.504 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 121 ;19.027 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5868 ; 7.984 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 272047 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.69600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.84800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.69600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.84800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 32 CB - CG - CD1 ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 169.03 83.18 REMARK 500 PHE A 81 53.35 -93.60 REMARK 500 ARG A 85 179.82 176.30 REMARK 500 SER A 190 -160.46 -107.15 REMARK 500 ASN A 204 39.47 -160.60 REMARK 500 LEU A 334 -125.84 -102.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VL8 RELATED DB: PDB REMARK 900 RELATED ID: 3VL9 RELATED DB: PDB REMARK 900 RELATED ID: 3VLB RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL GLN IS CONVERTED TO PCA BY POST-TRANSLATIONAL REMARK 999 MODIFICATION. DBREF 3VLA A 1 413 UNP Q05929 Q05929_DAUCA 21 433 SEQRES 1 A 413 PCA PRO SER PHE ARG PRO SER ALA LEU VAL VAL PRO VAL SEQRES 2 A 413 LYS LYS ASP ALA SER THR LEU GLN TYR VAL THR THR ILE SEQRES 3 A 413 ASN GLN ARG THR PRO LEU VAL SER GLU ASN LEU VAL VAL SEQRES 4 A 413 ASP LEU GLY GLY ARG PHE LEU TRP VAL ASP CYS ASP GLN SEQRES 5 A 413 ASN TYR VAL SER SER THR TYR ARG PRO VAL ARG CYS ARG SEQRES 6 A 413 THR SER GLN CYS SER LEU SER GLY SER ILE ALA CYS GLY SEQRES 7 A 413 ASP CYS PHE ASN GLY PRO ARG PRO GLY CYS ASN ASN ASN SEQRES 8 A 413 THR CYS GLY VAL PHE PRO GLU ASN PRO VAL ILE ASN THR SEQRES 9 A 413 ALA THR GLY GLY GLU VAL ALA GLU ASP VAL VAL SER VAL SEQRES 10 A 413 GLU SER THR ASP GLY SER SER SER GLY ARG VAL VAL THR SEQRES 11 A 413 VAL PRO ARG PHE ILE PHE SER CYS ALA PRO THR SER LEU SEQRES 12 A 413 LEU GLN ASN LEU ALA SER GLY VAL VAL GLY MET ALA GLY SEQRES 13 A 413 LEU GLY ARG THR ARG ILE ALA LEU PRO SER GLN PHE ALA SEQRES 14 A 413 SER ALA PHE SER PHE LYS ARG LYS PHE ALA MET CYS LEU SEQRES 15 A 413 SER GLY SER THR SER SER ASN SER VAL ILE ILE PHE GLY SEQRES 16 A 413 ASN ASP PRO TYR THR PHE LEU PRO ASN ILE ILE VAL SER SEQRES 17 A 413 ASP LYS THR LEU THR TYR THR PRO LEU LEU THR ASN PRO SEQRES 18 A 413 VAL SER THR SER ALA THR SER THR GLN GLY GLU PRO SER SEQRES 19 A 413 VAL GLU TYR PHE ILE GLY VAL LYS SER ILE LYS ILE ASN SEQRES 20 A 413 SER LYS ILE VAL ALA LEU ASN THR SER LEU LEU SER ILE SEQRES 21 A 413 SER SER ALA GLY LEU GLY GLY THR LYS ILE SER THR ILE SEQRES 22 A 413 ASN PRO TYR THR VAL LEU GLU THR SER ILE TYR LYS ALA SEQRES 23 A 413 VAL THR GLU ALA PHE ILE LYS GLU SER ALA ALA ARG ASN SEQRES 24 A 413 ILE THR ARG VAL ALA SER VAL ALA PRO PHE GLY ALA CYS SEQRES 25 A 413 PHE SER THR ASP ASN ILE LEU SER THR ARG LEU GLY PRO SEQRES 26 A 413 SER VAL PRO SER ILE ASP LEU VAL LEU GLN SER GLU SER SEQRES 27 A 413 VAL VAL TRP THR ILE THR GLY SER ASN SER MET VAL TYR SEQRES 28 A 413 ILE ASN ASP ASN VAL VAL CYS LEU GLY VAL VAL ASP GLY SEQRES 29 A 413 GLY SER ASN LEU ARG THR SER ILE VAL ILE GLY GLY HIS SEQRES 30 A 413 GLN LEU GLU ASP ASN LEU VAL GLN PHE ASP LEU ALA THR SEQRES 31 A 413 SER ARG VAL GLY PHE SER GLY THR LEU LEU GLY SER ARG SEQRES 32 A 413 THR THR CYS ALA ASN PHE ASN PHE THR SER MODRES 3VLA ASN A 254 ASN GLYCOSYLATION SITE MODRES 3VLA ASN A 410 ASN GLYCOSYLATION SITE MODRES 3VLA ASN A 299 ASN GLYCOSYLATION SITE MODRES 3VLA ASN A 90 ASN GLYCOSYLATION SITE HET PCA A 1 8 HET NAG A 601 14 HET NAG A 701 14 HET NAG A 801 14 HET NAG A 501 14 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 HOH *672(H2 O) HELIX 1 1 THR A 66 SER A 72 1 7 HELIX 2 2 PRO A 140 GLN A 145 5 6 HELIX 3 3 ALA A 163 SER A 173 1 11 HELIX 4 4 ASN A 254 LEU A 258 5 5 HELIX 5 5 THR A 281 ARG A 298 1 18 HELIX 6 6 THR A 344 SER A 348 1 5 HELIX 7 7 GLY A 375 GLU A 380 1 6 HELIX 8 8 LEU A 400 ARG A 403 5 4 HELIX 9 9 THR A 405 PHE A 409 5 5 SHEET 1 A14 ALA A 76 GLY A 78 0 SHEET 2 A14 THR A 92 VAL A 95 -1 O THR A 92 N GLY A 78 SHEET 3 A14 GLY A 108 THR A 120 -1 O VAL A 110 N CYS A 93 SHEET 4 A14 SER A 125 ALA A 139 -1 O CYS A 138 N GLU A 109 SHEET 5 A14 LEU A 46 ASP A 49 1 N LEU A 46 O SER A 137 SHEET 6 A14 GLY A 153 GLY A 156 -1 O MET A 154 N TRP A 47 SHEET 7 A14 VAL A 33 ASP A 40 1 N VAL A 38 O ALA A 155 SHEET 8 A14 TYR A 22 GLN A 28 -1 N ILE A 26 O GLU A 35 SHEET 9 A14 ALA A 8 LYS A 15 -1 N LYS A 14 O VAL A 23 SHEET 10 A14 SER A 190 GLY A 195 -1 O SER A 190 N VAL A 13 SHEET 11 A14 LYS A 177 CYS A 181 -1 N LYS A 177 O GLY A 195 SHEET 12 A14 ASN A 382 ASP A 387 -1 O PHE A 386 N PHE A 178 SHEET 13 A14 ARG A 392 THR A 398 -1 O ARG A 392 N ASP A 387 SHEET 14 A14 THR A 213 PRO A 216 -1 N THR A 215 O VAL A 393 SHEET 1 B 6 GLY A 108 THR A 120 0 SHEET 2 B 6 ARG A 60 PRO A 61 -1 N ARG A 60 O GLU A 112 SHEET 3 B 6 TYR A 22 GLN A 28 0 SHEET 4 B 6 ALA A 8 LYS A 15 -1 N LYS A 14 O VAL A 23 SHEET 5 B 6 GLY A 108 THR A 120 -1 O GLU A 118 N VAL A 10 SHEET 6 B 6 ARG A 60 PRO A 61 -1 N ARG A 60 O GLU A 112 SHEET 1 C 8 ARG A 60 PRO A 61 0 SHEET 2 C 8 GLY A 108 THR A 120 -1 O GLU A 112 N ARG A 60 SHEET 3 C 8 ALA A 8 LYS A 15 -1 N VAL A 10 O GLU A 118 SHEET 4 C 8 SER A 190 GLY A 195 -1 O SER A 190 N VAL A 13 SHEET 5 C 8 LYS A 177 CYS A 181 -1 N LYS A 177 O GLY A 195 SHEET 6 C 8 ASN A 382 ASP A 387 -1 O PHE A 386 N PHE A 178 SHEET 7 C 8 ARG A 392 THR A 398 -1 O ARG A 392 N ASP A 387 SHEET 8 C 8 THR A 213 PRO A 216 -1 N THR A 215 O VAL A 393 SHEET 1 D 2 GLU A 98 ASN A 99 0 SHEET 2 D 2 THR A 104 ALA A 105 -1 O THR A 104 N ASN A 99 SHEET 1 E 2 TYR A 199 PHE A 201 0 SHEET 2 E 2 ILE A 205 VAL A 207 -1 O VAL A 207 N TYR A 199 SHEET 1 F 5 PHE A 238 ILE A 239 0 SHEET 2 F 5 THR A 268 ILE A 270 -1 O THR A 268 N ILE A 239 SHEET 3 F 5 ILE A 372 ILE A 374 1 O ILE A 374 N LYS A 269 SHEET 4 F 5 THR A 277 GLU A 280 -1 N VAL A 278 O VAL A 373 SHEET 5 F 5 VAL A 361 GLY A 365 1 O GLY A 364 N LEU A 279 SHEET 1 G 4 LYS A 249 VAL A 251 0 SHEET 2 G 4 SER A 243 ILE A 246 -1 N ILE A 244 O VAL A 251 SHEET 3 G 4 ILE A 330 VAL A 333 -1 O ASP A 331 N LYS A 245 SHEET 4 G 4 VAL A 340 ILE A 343 -1 O ILE A 343 N ILE A 330 SHEET 1 H 4 ARG A 302 VAL A 303 0 SHEET 2 H 4 CYS A 312 SER A 314 -1 O CYS A 312 N VAL A 303 SHEET 3 H 4 VAL A 356 LEU A 359 -1 O VAL A 357 N PHE A 313 SHEET 4 H 4 MET A 349 ASN A 353 -1 N VAL A 350 O CYS A 358 SHEET 1 I 2 SER A 320 THR A 321 0 SHEET 2 I 2 GLY A 324 PRO A 325 -1 O GLY A 324 N THR A 321 SSBOND 1 CYS A 50 CYS A 138 1555 1555 2.06 SSBOND 2 CYS A 64 CYS A 77 1555 1555 2.05 SSBOND 3 CYS A 69 CYS A 93 1555 1555 2.08 SSBOND 4 CYS A 80 CYS A 88 1555 1555 2.09 SSBOND 5 CYS A 181 CYS A 406 1555 1555 2.05 SSBOND 6 CYS A 312 CYS A 358 1555 1555 2.21 LINK C PCA A 1 N PRO A 2 1555 1555 1.33 LINK ND2 ASN A 90 C1 NAG A 501 1555 1555 1.57 LINK ND2 ASN A 254 C1 NAG A 601 1555 1555 1.43 LINK ND2 ASN A 299 C1 NAG A 701 1555 1555 1.61 LINK ND2 ASN A 410 C1 NAG A 801 1555 1555 1.54 CISPEP 1 THR A 30 PRO A 31 0 0.70 CISPEP 2 ASP A 197 PRO A 198 0 -2.51 CISPEP 3 LEU A 202 PRO A 203 0 6.25 CISPEP 4 ALA A 307 PRO A 308 0 9.66 CRYST1 130.102 130.102 44.544 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007686 0.004438 0.000000 0.00000 SCALE2 0.000000 0.008875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022450 0.00000 HETATM 1 N PCA A 1 -26.240 10.809 -3.644 1.00 21.70 N ANISOU 1 N PCA A 1 2625 3489 2130 -148 842 421 N HETATM 2 CA PCA A 1 -26.458 11.455 -4.905 1.00 17.41 C ANISOU 2 CA PCA A 1 1867 2682 2063 -379 0 6 C HETATM 3 CB PCA A 1 -27.156 12.775 -4.496 1.00 23.62 C ANISOU 3 CB PCA A 1 2565 3149 3259 29 -123 -372 C HETATM 4 CG PCA A 1 -26.805 12.995 -3.028 1.00 24.69 C ANISOU 4 CG PCA A 1 3374 3182 2825 452 132 458 C HETATM 5 CD PCA A 1 -26.392 11.604 -2.586 1.00 23.12 C ANISOU 5 CD PCA A 1 3354 3155 2272 450 379 112 C HETATM 6 OE PCA A 1 -26.186 11.297 -1.393 1.00 22.84 O ANISOU 6 OE PCA A 1 3267 3182 2228 454 283 -163 O HETATM 7 C PCA A 1 -25.100 11.777 -5.462 1.00 15.17 C ANISOU 7 C PCA A 1 1930 2221 1611 -602 -241 -77 C HETATM 8 O PCA A 1 -24.132 11.894 -4.687 1.00 17.42 O ANISOU 8 O PCA A 1 2189 2750 1677 -355 -414 -48 O