HEADER CHAPERONE 01-DEC-11 3VLE TITLE CRYSTAL STRUCTURE OF YEAST PROTEASOME INTERACTING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN HSM3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENHANCED SPONTANEOUS MUTABILITY PROTEIN 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: HSM3, YBR272C, YBR1740; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HEAT REPEAT, RPT1, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKAGI,S.KIM,K.KATO,K.TANAKA,Y.SAEKI,T.MIZUSHIMA REVDAT 3 08-NOV-23 3VLE 1 SEQADV REVDAT 2 18-APR-12 3VLE 1 JRNL REVDAT 1 22-FEB-12 3VLE 0 JRNL AUTH K.TAKAGI,S.KIM,H.YUKII,M.UENO,R.MORISHITA,Y.ENDO,K.KATO, JRNL AUTH 2 K.TANAKA,Y.SAEKI,T.MIZUSHIMA JRNL TITL STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF RPT1, AN ATPASE JRNL TITL 2 SUBUNIT OF THE 26S PROTEASOME, BY A PROTEASOME-DEDICATED JRNL TITL 3 CHAPERONE HSM3 JRNL REF J.BIOL.CHEM. V. 287 12172 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22334676 JRNL DOI 10.1074/JBC.M112.345876 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7178 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9701 ; 0.951 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 856 ; 3.711 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 341 ;30.819 ;24.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1362 ;13.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1135 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5264 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4313 ; 1.327 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7016 ; 2.489 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2865 ; 4.065 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2685 ; 6.543 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 72.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: PDB ENTRY 3VLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3000, 0.2M POTASSIUM PHOSPHATE, REMARK 280 0.1M TRIS-HCL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.94650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 TYR A 8 REMARK 465 VAL A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 24 REMARK 465 LEU A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 ILE A 29 REMARK 465 ASN A 30 REMARK 465 VAL A 44 REMARK 465 SER A 45 REMARK 465 LEU A 46 REMARK 465 PRO A 47 REMARK 465 ASP A 48 REMARK 465 ASN A 65 REMARK 465 VAL A 66 REMARK 465 SER A 67 REMARK 465 TYR A 68 REMARK 465 ASP A 69 REMARK 465 SER A 70 REMARK 465 LEU A 71 REMARK 465 ASN A 72 REMARK 465 TYR A 73 REMARK 465 ASN A 467 REMARK 465 TYR A 468 REMARK 465 SER A 469 REMARK 465 THR A 470 REMARK 465 GLY A 471 REMARK 465 SER A 472 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 465 LYS A 475 REMARK 465 ILE A 476 REMARK 465 ALA A 477 REMARK 465 ASP A 478 REMARK 465 CYS A 479 REMARK 465 ARG A 480 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 ASN B 7 REMARK 465 TYR B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 23 REMARK 465 ASN B 24 REMARK 465 LEU B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 28 REMARK 465 ILE B 29 REMARK 465 ASN B 30 REMARK 465 VAL B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 PRO B 47 REMARK 465 ASP B 48 REMARK 465 SER B 64 REMARK 465 ASN B 65 REMARK 465 VAL B 66 REMARK 465 SER B 67 REMARK 465 TYR B 68 REMARK 465 ASP B 69 REMARK 465 SER B 70 REMARK 465 LEU B 71 REMARK 465 ASN B 72 REMARK 465 TYR B 73 REMARK 465 ASP B 74 REMARK 465 LYS B 466 REMARK 465 ASN B 467 REMARK 465 TYR B 468 REMARK 465 SER B 469 REMARK 465 THR B 470 REMARK 465 GLY B 471 REMARK 465 SER B 472 REMARK 465 GLU B 473 REMARK 465 THR B 474 REMARK 465 LYS B 475 REMARK 465 ILE B 476 REMARK 465 ALA B 477 REMARK 465 ASP B 478 REMARK 465 CYS B 479 REMARK 465 ARG B 480 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 222 OE2 GLU B 386 2455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 175 -71.82 -108.56 REMARK 500 LYS A 253 58.47 -98.39 REMARK 500 SER A 313 -52.39 -128.20 REMARK 500 ASN A 331 115.57 -32.99 REMARK 500 SER A 420 14.28 -152.09 REMARK 500 SER A 449 -126.35 51.51 REMARK 500 THR B 14 -53.65 -130.89 REMARK 500 ASN B 18 -57.30 -125.07 REMARK 500 LEU B 20 42.84 -91.41 REMARK 500 ASP B 50 99.73 -38.74 REMARK 500 ASP B 175 -71.61 -109.20 REMARK 500 LYS B 253 59.32 -104.43 REMARK 500 ASN B 331 117.02 -34.35 REMARK 500 HIS B 339 43.66 -140.22 REMARK 500 SER B 420 6.31 -153.44 REMARK 500 SER B 449 -130.43 55.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VLD RELATED DB: PDB REMARK 900 RELATED ID: 3VLF RELATED DB: PDB DBREF 3VLE A 1 480 UNP P38348 HSM3_YEAST 1 480 DBREF 3VLE B 1 480 UNP P38348 HSM3_YEAST 1 480 SEQADV 3VLE MET A -19 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY A -18 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER A -17 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER A -16 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -15 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -14 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -13 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -12 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -11 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A -10 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER A -9 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER A -8 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY A -7 UNP P38348 EXPRESSION TAG SEQADV 3VLE LEU A -6 UNP P38348 EXPRESSION TAG SEQADV 3VLE VAL A -5 UNP P38348 EXPRESSION TAG SEQADV 3VLE PRO A -4 UNP P38348 EXPRESSION TAG SEQADV 3VLE ARG A -3 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY A -2 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER A -1 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS A 0 UNP P38348 EXPRESSION TAG SEQADV 3VLE MET B -19 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY B -18 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER B -17 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER B -16 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -15 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -14 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -13 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -12 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -11 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B -10 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER B -9 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER B -8 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY B -7 UNP P38348 EXPRESSION TAG SEQADV 3VLE LEU B -6 UNP P38348 EXPRESSION TAG SEQADV 3VLE VAL B -5 UNP P38348 EXPRESSION TAG SEQADV 3VLE PRO B -4 UNP P38348 EXPRESSION TAG SEQADV 3VLE ARG B -3 UNP P38348 EXPRESSION TAG SEQADV 3VLE GLY B -2 UNP P38348 EXPRESSION TAG SEQADV 3VLE SER B -1 UNP P38348 EXPRESSION TAG SEQADV 3VLE HIS B 0 UNP P38348 EXPRESSION TAG SEQRES 1 A 500 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 500 LEU VAL PRO ARG GLY SER HIS MET SER GLU LYS GLU THR SEQRES 3 A 500 ASN TYR VAL GLU ASN LEU LEU THR GLN LEU GLU ASN GLU SEQRES 4 A 500 LEU ASN GLU ASP ASN LEU PRO GLU ASP ILE ASN THR LEU SEQRES 5 A 500 LEU ARG LYS CYS SER LEU ASN LEU VAL THR VAL VAL SER SEQRES 6 A 500 LEU PRO ASP MET ASP VAL LYS PRO LEU LEU ALA THR ILE SEQRES 7 A 500 LYS ARG PHE LEU THR SER ASN VAL SER TYR ASP SER LEU SEQRES 8 A 500 ASN TYR ASP TYR LEU LEU ASP VAL VAL ASP LYS LEU VAL SEQRES 9 A 500 PRO MET ALA ASP PHE ASP ASP VAL LEU GLU VAL TYR SER SEQRES 10 A 500 ALA GLU ASP LEU VAL LYS ALA LEU ARG SER GLU ILE ASP SEQRES 11 A 500 PRO LEU LYS VAL ALA ALA CYS ARG VAL ILE GLU ASN SER SEQRES 12 A 500 GLN PRO LYS GLY LEU PHE ALA THR SER ASN ILE ILE ASP SEQRES 13 A 500 ILE LEU LEU ASP ILE LEU PHE ASP GLU LYS VAL GLU ASN SEQRES 14 A 500 ASP LYS LEU ILE THR ALA ILE GLU LYS ALA LEU GLU ARG SEQRES 15 A 500 LEU SER THR ASP GLU LEU ILE ARG ARG ARG LEU PHE ASP SEQRES 16 A 500 ASN ASN LEU PRO TYR LEU VAL SER VAL LYS GLY ARG MET SEQRES 17 A 500 GLU THR VAL SER PHE VAL ARG LEU ILE ASP PHE LEU THR SEQRES 18 A 500 ILE GLU PHE GLN PHE ILE SER GLY PRO GLU PHE LYS ASP SEQRES 19 A 500 ILE ILE PHE CYS PHE THR LYS GLU GLU ILE LEU LYS SER SEQRES 20 A 500 VAL GLU ASP ILE LEU VAL PHE ILE GLU LEU VAL ASN TYR SEQRES 21 A 500 TYR THR LYS PHE LEU LEU GLU ILE ARG ASN GLN ASP LYS SEQRES 22 A 500 TYR TRP ALA LEU ARG HIS VAL LYS LYS ILE LEU PRO VAL SEQRES 23 A 500 PHE ALA GLN LEU PHE GLU ASP THR GLU ASN TYR PRO ASP SEQRES 24 A 500 VAL ARG ALA PHE SER THR ASN CYS LEU LEU GLN LEU PHE SEQRES 25 A 500 ALA GLU VAL SER ARG ILE GLU GLU ASP GLU TYR SER LEU SEQRES 26 A 500 PHE LYS THR MET ASP LYS ASP SER LEU LYS ILE GLY SER SEQRES 27 A 500 GLU ALA LYS LEU ILE THR GLU TRP LEU GLU LEU ILE ASN SEQRES 28 A 500 PRO GLN TYR LEU VAL LYS TYR HIS LYS ASP VAL VAL GLU SEQRES 29 A 500 ASN TYR PHE HIS VAL SER GLY TYR SER ILE GLY MET LEU SEQRES 30 A 500 ARG ASN LEU SER ALA ASP GLU GLU CYS PHE ASN ALA ILE SEQRES 31 A 500 ARG ASN LYS PHE SER ALA GLU ILE VAL LEU ARG LEU PRO SEQRES 32 A 500 TYR LEU GLU GLN MET GLN VAL VAL GLU THR LEU THR ARG SEQRES 33 A 500 TYR GLU TYR THR SER LYS PHE LEU LEU ASN GLU MET PRO SEQRES 34 A 500 LYS VAL MET GLY SER LEU ILE GLY ASP GLY SER ALA GLY SEQRES 35 A 500 ALA ILE ILE ASP LEU GLU THR VAL HIS TYR ARG ASN SER SEQRES 36 A 500 ALA LEU ARG ASN LEU LEU ASP LYS GLY GLU GLU LYS LEU SEQRES 37 A 500 SER VAL TRP TYR GLU PRO LEU LEU ARG GLU TYR SER LYS SEQRES 38 A 500 ALA VAL ASN GLY LYS ASN TYR SER THR GLY SER GLU THR SEQRES 39 A 500 LYS ILE ALA ASP CYS ARG SEQRES 1 B 500 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 500 LEU VAL PRO ARG GLY SER HIS MET SER GLU LYS GLU THR SEQRES 3 B 500 ASN TYR VAL GLU ASN LEU LEU THR GLN LEU GLU ASN GLU SEQRES 4 B 500 LEU ASN GLU ASP ASN LEU PRO GLU ASP ILE ASN THR LEU SEQRES 5 B 500 LEU ARG LYS CYS SER LEU ASN LEU VAL THR VAL VAL SER SEQRES 6 B 500 LEU PRO ASP MET ASP VAL LYS PRO LEU LEU ALA THR ILE SEQRES 7 B 500 LYS ARG PHE LEU THR SER ASN VAL SER TYR ASP SER LEU SEQRES 8 B 500 ASN TYR ASP TYR LEU LEU ASP VAL VAL ASP LYS LEU VAL SEQRES 9 B 500 PRO MET ALA ASP PHE ASP ASP VAL LEU GLU VAL TYR SER SEQRES 10 B 500 ALA GLU ASP LEU VAL LYS ALA LEU ARG SER GLU ILE ASP SEQRES 11 B 500 PRO LEU LYS VAL ALA ALA CYS ARG VAL ILE GLU ASN SER SEQRES 12 B 500 GLN PRO LYS GLY LEU PHE ALA THR SER ASN ILE ILE ASP SEQRES 13 B 500 ILE LEU LEU ASP ILE LEU PHE ASP GLU LYS VAL GLU ASN SEQRES 14 B 500 ASP LYS LEU ILE THR ALA ILE GLU LYS ALA LEU GLU ARG SEQRES 15 B 500 LEU SER THR ASP GLU LEU ILE ARG ARG ARG LEU PHE ASP SEQRES 16 B 500 ASN ASN LEU PRO TYR LEU VAL SER VAL LYS GLY ARG MET SEQRES 17 B 500 GLU THR VAL SER PHE VAL ARG LEU ILE ASP PHE LEU THR SEQRES 18 B 500 ILE GLU PHE GLN PHE ILE SER GLY PRO GLU PHE LYS ASP SEQRES 19 B 500 ILE ILE PHE CYS PHE THR LYS GLU GLU ILE LEU LYS SER SEQRES 20 B 500 VAL GLU ASP ILE LEU VAL PHE ILE GLU LEU VAL ASN TYR SEQRES 21 B 500 TYR THR LYS PHE LEU LEU GLU ILE ARG ASN GLN ASP LYS SEQRES 22 B 500 TYR TRP ALA LEU ARG HIS VAL LYS LYS ILE LEU PRO VAL SEQRES 23 B 500 PHE ALA GLN LEU PHE GLU ASP THR GLU ASN TYR PRO ASP SEQRES 24 B 500 VAL ARG ALA PHE SER THR ASN CYS LEU LEU GLN LEU PHE SEQRES 25 B 500 ALA GLU VAL SER ARG ILE GLU GLU ASP GLU TYR SER LEU SEQRES 26 B 500 PHE LYS THR MET ASP LYS ASP SER LEU LYS ILE GLY SER SEQRES 27 B 500 GLU ALA LYS LEU ILE THR GLU TRP LEU GLU LEU ILE ASN SEQRES 28 B 500 PRO GLN TYR LEU VAL LYS TYR HIS LYS ASP VAL VAL GLU SEQRES 29 B 500 ASN TYR PHE HIS VAL SER GLY TYR SER ILE GLY MET LEU SEQRES 30 B 500 ARG ASN LEU SER ALA ASP GLU GLU CYS PHE ASN ALA ILE SEQRES 31 B 500 ARG ASN LYS PHE SER ALA GLU ILE VAL LEU ARG LEU PRO SEQRES 32 B 500 TYR LEU GLU GLN MET GLN VAL VAL GLU THR LEU THR ARG SEQRES 33 B 500 TYR GLU TYR THR SER LYS PHE LEU LEU ASN GLU MET PRO SEQRES 34 B 500 LYS VAL MET GLY SER LEU ILE GLY ASP GLY SER ALA GLY SEQRES 35 B 500 ALA ILE ILE ASP LEU GLU THR VAL HIS TYR ARG ASN SER SEQRES 36 B 500 ALA LEU ARG ASN LEU LEU ASP LYS GLY GLU GLU LYS LEU SEQRES 37 B 500 SER VAL TRP TYR GLU PRO LEU LEU ARG GLU TYR SER LYS SEQRES 38 B 500 ALA VAL ASN GLY LYS ASN TYR SER THR GLY SER GLU THR SEQRES 39 B 500 LYS ILE ALA ASP CYS ARG FORMUL 3 HOH *166(H2 O) HELIX 1 1 ASN A 11 LEU A 20 1 10 HELIX 2 2 LEU A 32 VAL A 43 1 12 HELIX 3 3 VAL A 51 THR A 63 1 13 HELIX 4 4 TYR A 75 VAL A 84 1 10 HELIX 5 5 ASP A 88 TYR A 96 1 9 HELIX 6 6 SER A 97 ARG A 106 1 10 HELIX 7 7 ILE A 109 ASN A 122 1 14 HELIX 8 8 GLY A 127 SER A 132 5 6 HELIX 9 9 ASN A 133 PHE A 143 1 11 HELIX 10 10 ASN A 149 SER A 164 1 16 HELIX 11 11 ASP A 166 ASP A 175 1 10 HELIX 12 12 ASN A 177 MET A 188 1 12 HELIX 13 13 GLU A 189 GLN A 205 1 17 HELIX 14 14 PHE A 206 ILE A 207 5 2 HELIX 15 15 SER A 208 PHE A 212 5 5 HELIX 16 16 LYS A 213 CYS A 218 1 6 HELIX 17 17 THR A 220 VAL A 228 1 9 HELIX 18 18 ASP A 230 GLN A 251 1 22 HELIX 19 19 LYS A 253 TRP A 255 5 3 HELIX 20 20 ALA A 256 LYS A 261 1 6 HELIX 21 21 ILE A 263 ASP A 273 1 11 HELIX 22 22 PRO A 278 SER A 296 1 19 HELIX 23 23 TYR A 303 SER A 313 1 11 HELIX 24 24 GLU A 319 LYS A 321 5 3 HELIX 25 25 LEU A 322 ILE A 330 1 9 HELIX 26 26 ASN A 331 PHE A 347 1 17 HELIX 27 27 SER A 350 TYR A 352 5 3 HELIX 28 28 SER A 353 SER A 361 1 9 HELIX 29 29 ASP A 363 ARG A 371 1 9 HELIX 30 30 ASN A 372 PHE A 374 5 3 HELIX 31 31 SER A 375 ARG A 381 1 7 HELIX 32 32 PRO A 383 THR A 395 1 13 HELIX 33 33 TYR A 397 MET A 408 1 12 HELIX 34 34 MET A 408 GLY A 417 1 10 HELIX 35 35 SER A 420 ILE A 424 5 5 HELIX 36 36 ASP A 426 ASP A 442 1 17 HELIX 37 37 GLY A 444 SER A 449 1 6 HELIX 38 38 TRP A 451 GLY A 465 1 15 HELIX 39 39 GLN B 15 LEU B 20 1 6 HELIX 40 40 LEU B 32 THR B 42 1 11 HELIX 41 41 VAL B 51 THR B 63 1 13 HELIX 42 42 LEU B 76 VAL B 84 1 9 HELIX 43 43 ASP B 88 TYR B 96 1 9 HELIX 44 44 SER B 97 ARG B 106 1 10 HELIX 45 45 ILE B 109 ASN B 122 1 14 HELIX 46 46 PRO B 125 ALA B 130 5 6 HELIX 47 47 ASN B 133 PHE B 143 1 11 HELIX 48 48 ASN B 149 SER B 164 1 16 HELIX 49 49 ASP B 166 ASP B 175 1 10 HELIX 50 50 ASN B 177 MET B 188 1 12 HELIX 51 51 GLU B 189 GLN B 205 1 17 HELIX 52 52 PHE B 206 ILE B 207 5 2 HELIX 53 53 SER B 208 PHE B 212 5 5 HELIX 54 54 LYS B 213 CYS B 218 1 6 HELIX 55 55 THR B 220 VAL B 228 1 9 HELIX 56 56 ASP B 230 ASP B 252 1 23 HELIX 57 57 LYS B 253 TRP B 255 5 3 HELIX 58 58 ALA B 256 LYS B 261 1 6 HELIX 59 59 ILE B 263 ASP B 273 1 11 HELIX 60 60 PRO B 278 SER B 296 1 19 HELIX 61 61 TYR B 303 SER B 313 1 11 HELIX 62 62 GLU B 319 LYS B 321 5 3 HELIX 63 63 LEU B 322 ILE B 330 1 9 HELIX 64 64 ASN B 331 HIS B 339 1 9 HELIX 65 65 HIS B 339 PHE B 347 1 9 HELIX 66 66 SER B 353 SER B 361 1 9 HELIX 67 67 ASP B 363 ARG B 371 1 9 HELIX 68 68 ASN B 372 PHE B 374 5 3 HELIX 69 69 SER B 375 ARG B 381 1 7 HELIX 70 70 PRO B 383 THR B 395 1 13 HELIX 71 71 TYR B 397 MET B 408 1 12 HELIX 72 72 MET B 408 GLY B 417 1 10 HELIX 73 73 SER B 420 ILE B 424 5 5 HELIX 74 74 ASP B 426 ASP B 442 1 17 HELIX 75 75 GLY B 444 SER B 449 1 6 HELIX 76 76 TRP B 451 GLY B 465 1 15 CISPEP 1 GLN A 124 PRO A 125 0 0.05 CISPEP 2 GLN B 124 PRO B 125 0 -1.00 CRYST1 78.801 91.893 78.949 90.00 113.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012690 0.000000 0.005403 0.00000 SCALE2 0.000000 0.010882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013767 0.00000