HEADER SUGAR BINDING PROTEIN 05-DEC-11 3VLW TITLE CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PROTEIN TITLE 2 ALGQ1 IN COMPLEX WITH MANNURONATE-GULURONATE DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGQ1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-526; COMPND 5 SYNONYM: ALGINATE-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 90322; SOURCE 4 STRAIN: A1; SOURCE 5 GENE: ALGQ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS SUGAR BINDING PROTEIN, ALGINATE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NISHITANI,Y.MARUYAMA,T.ITOH,B.MIKAMI,W.HASHIMOTO,K.MURATA REVDAT 4 08-NOV-23 3VLW 1 REMARK HETSYN REVDAT 3 29-JUL-20 3VLW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-NOV-13 3VLW 1 JRNL REVDAT 1 25-JAN-12 3VLW 0 JRNL AUTH Y.NISHITANI,Y.MARUYAMA,T.ITOH,B.MIKAMI,W.HASHIMOTO,K.MURATA JRNL TITL RECOGNITION OF HETEROPOLYSACCHARIDE ALGINATE BY PERIPLASMIC JRNL TITL 2 SOLUTE-BINDING PROTEINS OF A BACTERIAL ABC TRANSPORTER JRNL REF BIOCHEMISTRY V. 51 3622 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22486720 JRNL DOI 10.1021/BI300194F REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 61732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8539 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11566 ; 0.948 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1009 ; 4.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 435 ;36.099 ;24.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1432 ;13.533 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;15.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1183 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6587 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4944 ; 0.296 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8016 ; 0.570 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3595 ; 0.787 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3534 ; 1.319 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3A09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.76650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 GLY A 491 REMARK 465 GLY A 492 REMARK 465 ALA A 493 REMARK 465 ALA A 494 REMARK 465 LYS A 495 REMARK 465 PRO A 496 REMARK 465 ALA A 497 REMARK 465 GLN A 498 REMARK 465 VAL A 499 REMARK 465 GLY A 500 REMARK 465 ALA A 501 REMARK 465 LYS A 502 REMARK 465 ARG B 1 REMARK 465 GLY B 491 REMARK 465 GLY B 492 REMARK 465 ALA B 493 REMARK 465 ALA B 494 REMARK 465 LYS B 495 REMARK 465 PRO B 496 REMARK 465 ALA B 497 REMARK 465 GLN B 498 REMARK 465 VAL B 499 REMARK 465 GLY B 500 REMARK 465 ALA B 501 REMARK 465 LYS B 502 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 232 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 LGU D 1 O5 BEM D 2 2.15 REMARK 500 O4 LGU C 1 O5 BEM C 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 11.49 58.57 REMARK 500 PRO A 68 -163.86 -77.19 REMARK 500 LEU A 134 -60.77 -107.28 REMARK 500 SER A 136 -80.80 -127.27 REMARK 500 LYS A 251 -133.46 64.95 REMARK 500 PRO A 314 40.70 -76.04 REMARK 500 ASP B 21 13.11 58.97 REMARK 500 LYS B 22 -24.24 -141.02 REMARK 500 LEU B 134 -66.36 -127.97 REMARK 500 SER B 136 -78.25 -124.52 REMARK 500 ASP B 244 119.29 -36.20 REMARK 500 LYS B 251 -133.70 67.80 REMARK 500 PRO B 314 41.11 -77.65 REMARK 500 PRO B 386 49.14 -72.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD2 REMARK 620 2 ASN A 173 OD1 90.4 REMARK 620 3 ASN A 175 OD1 87.6 76.1 REMARK 620 4 LYS A 177 O 89.7 166.3 90.2 REMARK 620 5 ASP A 179 OD2 171.9 96.4 89.7 82.6 REMARK 620 6 GLU A 180 OE1 92.4 67.6 143.7 126.1 94.3 REMARK 620 7 GLU A 180 OE2 107.1 114.8 161.0 78.2 74.0 49.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 171 OD1 REMARK 620 2 ASN B 173 OD1 89.5 REMARK 620 3 ASN B 175 OD1 88.4 76.0 REMARK 620 4 LYS B 177 O 90.7 164.8 88.9 REMARK 620 5 ASP B 179 OD2 168.9 99.7 87.9 78.8 REMARK 620 6 GLU B 180 OE1 90.0 70.1 146.0 125.1 98.8 REMARK 620 7 GLU B 180 OE2 106.3 117.2 159.6 77.2 75.0 50.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTU RELATED DB: PDB REMARK 900 RELATED ID: 3VTV RELATED DB: PDB REMARK 900 RELATED ID: 3A09 RELATED DB: PDB REMARK 900 RELATED ID: 1Y3N RELATED DB: PDB REMARK 900 RELATED ID: 1Y3P RELATED DB: PDB REMARK 900 RELATED ID: 1Y3Q RELATED DB: PDB DBREF 3VLW A 1 502 UNP Q9KWT6 Q9KWT6_SPHSX 25 526 DBREF 3VLW B 1 502 UNP Q9KWT6 Q9KWT6_SPHSX 25 526 SEQRES 1 A 502 ARG GLU ALA THR TRP VAL THR GLU LYS PRO LEU THR LEU SEQRES 2 A 502 LYS ILE HIS MET HIS PHE ARG ASP LYS TRP VAL TRP ASP SEQRES 3 A 502 GLU ASN TRP PRO VAL ALA ARG GLU VAL ALA ARG LEU THR SEQRES 4 A 502 ASN VAL LYS LEU VAL GLY VAL ALA ASN ARG ALA ALA THR SEQRES 5 A 502 ASN SER GLN GLU GLN PHE ASN LEU MET MET ALA SER GLY SEQRES 6 A 502 GLN LEU PRO ASP ILE VAL GLY GLY ASP ASN LEU LYS ASP SEQRES 7 A 502 LYS PHE ILE ARG TYR GLY MET GLU GLY ALA PHE ILE PRO SEQRES 8 A 502 LEU ASN LYS LEU ILE ASP GLN ASN ALA PRO ASN LEU LYS SEQRES 9 A 502 ALA PHE PHE LYS THR HIS PRO GLU VAL GLN ARG ALA ILE SEQRES 10 A 502 THR ALA PRO ASP GLY ASN ILE TYR TYR LEU PRO TYR VAL SEQRES 11 A 502 PRO ASP GLY LEU VAL SER ARG GLY TYR PHE ILE ARG GLN SEQRES 12 A 502 ASP TRP LEU ASP LYS LEU HIS LEU LYS THR PRO GLN THR SEQRES 13 A 502 VAL ASP GLU LEU TYR THR VAL LEU LYS ALA PHE LYS GLU SEQRES 14 A 502 LYS ASP PRO ASN GLY ASN GLY LYS ALA ASP GLU ILE PRO SEQRES 15 A 502 PHE ILE ASN ARG ASP PRO GLU GLU VAL PHE ARG LEU VAL SEQRES 16 A 502 ASN PHE TRP GLY ALA ARG SER THR GLY SER ASN THR TRP SEQRES 17 A 502 MET ASP PHE TYR VAL GLU ASN GLY LYS ILE LYS HIS PRO SEQRES 18 A 502 PHE ALA GLU VAL ALA PHE LYS ASP GLY ILE LYS HIS VAL SEQRES 19 A 502 ALA GLN TRP TYR LYS GLU GLY LEU ILE ASP PRO GLU ILE SEQRES 20 A 502 PHE THR ARG LYS ALA ARG SER ARG GLU GLN THR PHE GLY SEQRES 21 A 502 ASN ASN ILE GLY GLY MET THR HIS ASP TRP PHE ALA SER SEQRES 22 A 502 THR ALA LEU PHE ASN ASP ALA LEU SER LYS ASN ILE PRO SEQRES 23 A 502 GLY PHE LYS LEU VAL PRO MET ALA PRO PRO ILE ASN SER SEQRES 24 A 502 LYS GLY GLN ARG TRP GLU GLU ASP ALA ARG GLN ILE PRO SEQRES 25 A 502 ARG PRO ASP GLY TRP ALA ILE THR ALA THR ASN LYS ASN SEQRES 26 A 502 PRO VAL GLU THR ILE LYS LEU PHE ASP PHE TYR PHE GLY SEQRES 27 A 502 PRO LYS GLY ARG GLU LEU SER ASN PHE GLY VAL PRO GLY SEQRES 28 A 502 LEU THR TYR ASP ILE LYS ASN GLY LYS PRO VAL TYR LYS SEQRES 29 A 502 ASP THR VAL LEU LYS ALA ALA GLN PRO VAL ASN ASN GLN SEQRES 30 A 502 MET TYR ASP ILE GLY ALA GLN ILE PRO ILE GLY PHE TRP SEQRES 31 A 502 GLN ASP TYR GLU TYR GLU ARG GLN TRP THR ASN ASP VAL SEQRES 32 A 502 ALA LEU GLN GLY ILE ASP MET TYR ILE LYS ASN LYS TYR SEQRES 33 A 502 VAL LEU PRO GLN PHE THR GLY VAL ASN LEU THR VAL GLU SEQRES 34 A 502 GLU ARG GLU ILE TYR ASP LYS TYR TRP PRO ASP VAL LYS SEQRES 35 A 502 THR TYR MET PHE GLU MET GLY GLN SER TRP VAL MET GLY SEQRES 36 A 502 THR LYS ASP PRO GLU LYS THR TRP ASN ASP TYR GLN GLN SEQRES 37 A 502 GLN LEU LYS ASN ARG GLY PHE TYR GLN VAL MET ILE VAL SEQRES 38 A 502 MET GLN LYS ALA TYR ASP ARG GLN TYR GLY GLY ALA ALA SEQRES 39 A 502 LYS PRO ALA GLN VAL GLY ALA LYS SEQRES 1 B 502 ARG GLU ALA THR TRP VAL THR GLU LYS PRO LEU THR LEU SEQRES 2 B 502 LYS ILE HIS MET HIS PHE ARG ASP LYS TRP VAL TRP ASP SEQRES 3 B 502 GLU ASN TRP PRO VAL ALA ARG GLU VAL ALA ARG LEU THR SEQRES 4 B 502 ASN VAL LYS LEU VAL GLY VAL ALA ASN ARG ALA ALA THR SEQRES 5 B 502 ASN SER GLN GLU GLN PHE ASN LEU MET MET ALA SER GLY SEQRES 6 B 502 GLN LEU PRO ASP ILE VAL GLY GLY ASP ASN LEU LYS ASP SEQRES 7 B 502 LYS PHE ILE ARG TYR GLY MET GLU GLY ALA PHE ILE PRO SEQRES 8 B 502 LEU ASN LYS LEU ILE ASP GLN ASN ALA PRO ASN LEU LYS SEQRES 9 B 502 ALA PHE PHE LYS THR HIS PRO GLU VAL GLN ARG ALA ILE SEQRES 10 B 502 THR ALA PRO ASP GLY ASN ILE TYR TYR LEU PRO TYR VAL SEQRES 11 B 502 PRO ASP GLY LEU VAL SER ARG GLY TYR PHE ILE ARG GLN SEQRES 12 B 502 ASP TRP LEU ASP LYS LEU HIS LEU LYS THR PRO GLN THR SEQRES 13 B 502 VAL ASP GLU LEU TYR THR VAL LEU LYS ALA PHE LYS GLU SEQRES 14 B 502 LYS ASP PRO ASN GLY ASN GLY LYS ALA ASP GLU ILE PRO SEQRES 15 B 502 PHE ILE ASN ARG ASP PRO GLU GLU VAL PHE ARG LEU VAL SEQRES 16 B 502 ASN PHE TRP GLY ALA ARG SER THR GLY SER ASN THR TRP SEQRES 17 B 502 MET ASP PHE TYR VAL GLU ASN GLY LYS ILE LYS HIS PRO SEQRES 18 B 502 PHE ALA GLU VAL ALA PHE LYS ASP GLY ILE LYS HIS VAL SEQRES 19 B 502 ALA GLN TRP TYR LYS GLU GLY LEU ILE ASP PRO GLU ILE SEQRES 20 B 502 PHE THR ARG LYS ALA ARG SER ARG GLU GLN THR PHE GLY SEQRES 21 B 502 ASN ASN ILE GLY GLY MET THR HIS ASP TRP PHE ALA SER SEQRES 22 B 502 THR ALA LEU PHE ASN ASP ALA LEU SER LYS ASN ILE PRO SEQRES 23 B 502 GLY PHE LYS LEU VAL PRO MET ALA PRO PRO ILE ASN SER SEQRES 24 B 502 LYS GLY GLN ARG TRP GLU GLU ASP ALA ARG GLN ILE PRO SEQRES 25 B 502 ARG PRO ASP GLY TRP ALA ILE THR ALA THR ASN LYS ASN SEQRES 26 B 502 PRO VAL GLU THR ILE LYS LEU PHE ASP PHE TYR PHE GLY SEQRES 27 B 502 PRO LYS GLY ARG GLU LEU SER ASN PHE GLY VAL PRO GLY SEQRES 28 B 502 LEU THR TYR ASP ILE LYS ASN GLY LYS PRO VAL TYR LYS SEQRES 29 B 502 ASP THR VAL LEU LYS ALA ALA GLN PRO VAL ASN ASN GLN SEQRES 30 B 502 MET TYR ASP ILE GLY ALA GLN ILE PRO ILE GLY PHE TRP SEQRES 31 B 502 GLN ASP TYR GLU TYR GLU ARG GLN TRP THR ASN ASP VAL SEQRES 32 B 502 ALA LEU GLN GLY ILE ASP MET TYR ILE LYS ASN LYS TYR SEQRES 33 B 502 VAL LEU PRO GLN PHE THR GLY VAL ASN LEU THR VAL GLU SEQRES 34 B 502 GLU ARG GLU ILE TYR ASP LYS TYR TRP PRO ASP VAL LYS SEQRES 35 B 502 THR TYR MET PHE GLU MET GLY GLN SER TRP VAL MET GLY SEQRES 36 B 502 THR LYS ASP PRO GLU LYS THR TRP ASN ASP TYR GLN GLN SEQRES 37 B 502 GLN LEU LYS ASN ARG GLY PHE TYR GLN VAL MET ILE VAL SEQRES 38 B 502 MET GLN LYS ALA TYR ASP ARG GLN TYR GLY GLY ALA ALA SEQRES 39 B 502 LYS PRO ALA GLN VAL GLY ALA LYS HET LGU C 1 13 HET BEM C 2 12 HET LGU D 1 13 HET BEM D 2 12 HET CA A 503 1 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET CA B 503 1 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET GOL B 511 6 HET GOL B 512 6 HET GOL B 513 6 HET GOL B 514 6 HET GOL B 515 6 HET GOL B 516 6 HETNAM LGU ALPHA-L-GULOPYRANURONIC ACID HETNAM BEM BETA-D-MANNOPYRANURONIC ACID HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN LGU ALPHA-L-GULURONIC ACID; L-GULURONIC ACID; GULURONIC HETSYN 2 LGU ACID; ALPHA-L-GULURONATE HETSYN BEM BETA-D-MANNURONIC ACID; D-MANNURONIC ACID; MANNURONIC HETSYN 2 BEM ACID; (2S,3S,4S,5S,6R)-3,4,5,6-TETRAHYDROXYOXANE-2- HETSYN 3 BEM CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 LGU 2(C6 H10 O7) FORMUL 3 BEM 2(C6 H10 O7) FORMUL 5 CA 2(CA 2+) FORMUL 6 GOL 18(C3 H8 O3) FORMUL 25 HOH *458(H2 O) HELIX 1 1 TRP A 29 ASN A 40 1 12 HELIX 2 2 ASN A 53 GLY A 65 1 13 HELIX 3 3 LEU A 76 GLU A 86 1 11 HELIX 4 4 LEU A 92 ALA A 100 1 9 HELIX 5 5 ALA A 100 HIS A 110 1 11 HELIX 6 6 HIS A 110 THR A 118 1 9 HELIX 7 7 GLN A 143 LEU A 149 1 7 HELIX 8 8 THR A 156 LYS A 170 1 15 HELIX 9 9 GLU A 189 LEU A 194 1 6 HELIX 10 10 VAL A 195 GLY A 199 5 5 HELIX 11 11 HIS A 220 ALA A 223 5 4 HELIX 12 12 GLU A 224 GLU A 240 1 17 HELIX 13 13 ARG A 250 ALA A 252 5 3 HELIX 14 14 ARG A 253 PHE A 259 1 7 HELIX 15 15 PHE A 271 SER A 282 1 12 HELIX 16 16 ASN A 325 TYR A 336 1 12 HELIX 17 17 GLY A 338 GLY A 348 1 11 HELIX 18 18 LYS A 364 LYS A 369 1 6 HELIX 19 19 PRO A 373 ILE A 381 1 9 HELIX 20 20 ASP A 392 GLN A 398 1 7 HELIX 21 21 ASN A 401 ASN A 414 1 14 HELIX 22 22 THR A 427 MET A 454 1 28 HELIX 23 23 ASP A 458 ARG A 473 1 16 HELIX 24 24 GLY A 474 TYR A 490 1 17 HELIX 25 25 TRP B 29 ASN B 40 1 12 HELIX 26 26 ASN B 53 SER B 64 1 12 HELIX 27 27 LEU B 76 GLU B 86 1 11 HELIX 28 28 LEU B 92 ALA B 100 1 9 HELIX 29 29 ALA B 100 HIS B 110 1 11 HELIX 30 30 HIS B 110 THR B 118 1 9 HELIX 31 31 GLN B 143 LEU B 149 1 7 HELIX 32 32 THR B 156 LYS B 170 1 15 HELIX 33 33 ASP B 187 GLY B 199 5 13 HELIX 34 34 HIS B 220 ALA B 223 5 4 HELIX 35 35 GLU B 224 GLU B 240 1 17 HELIX 36 36 ARG B 250 ALA B 252 5 3 HELIX 37 37 ARG B 253 PHE B 259 1 7 HELIX 38 38 PHE B 271 SER B 282 1 12 HELIX 39 39 ASN B 325 TYR B 336 1 12 HELIX 40 40 GLY B 338 GLY B 348 1 11 HELIX 41 41 LYS B 364 LYS B 369 1 6 HELIX 42 42 PRO B 373 ASP B 380 1 8 HELIX 43 43 ASP B 392 GLN B 398 1 7 HELIX 44 44 ASN B 401 ASN B 414 1 14 HELIX 45 45 THR B 427 MET B 454 1 28 HELIX 46 46 ASP B 458 ARG B 473 1 16 HELIX 47 47 GLY B 474 TYR B 490 1 17 SHEET 1 A 3 TRP A 23 VAL A 24 0 SHEET 2 A 3 LEU A 11 PHE A 19 -1 N PHE A 19 O TRP A 23 SHEET 3 A 3 VAL A 41 GLY A 45 1 O LYS A 42 N LEU A 11 SHEET 1 B 6 TRP A 23 VAL A 24 0 SHEET 2 B 6 LEU A 11 PHE A 19 -1 N PHE A 19 O TRP A 23 SHEET 3 B 6 ILE A 70 GLY A 73 1 O ILE A 70 N HIS A 16 SHEET 4 B 6 GLY A 316 ILE A 319 -1 O ALA A 318 N VAL A 71 SHEET 5 B 6 LEU A 127 VAL A 130 -1 N LEU A 127 O TRP A 317 SHEET 6 B 6 PHE A 389 TRP A 390 1 O PHE A 389 N VAL A 130 SHEET 1 C 4 ILE A 181 PHE A 183 0 SHEET 2 C 4 GLY A 264 TRP A 270 1 O GLY A 265 N ILE A 181 SHEET 3 C 4 ARG A 137 ARG A 142 -1 N PHE A 140 O THR A 267 SHEET 4 C 4 LEU A 290 MET A 293 -1 O MET A 293 N TYR A 139 SHEET 1 D 2 TYR A 212 GLU A 214 0 SHEET 2 D 2 LYS A 217 LYS A 219 -1 O LYS A 219 N TYR A 212 SHEET 1 E 2 TYR A 354 LYS A 357 0 SHEET 2 E 2 LYS A 360 TYR A 363 -1 O LYS A 360 N LYS A 357 SHEET 1 F 3 TRP B 23 VAL B 24 0 SHEET 2 F 3 LEU B 11 PHE B 19 -1 N PHE B 19 O TRP B 23 SHEET 3 F 3 VAL B 41 GLY B 45 1 O LYS B 42 N LEU B 11 SHEET 1 G 6 TRP B 23 VAL B 24 0 SHEET 2 G 6 LEU B 11 PHE B 19 -1 N PHE B 19 O TRP B 23 SHEET 3 G 6 ILE B 70 GLY B 73 1 O ILE B 70 N HIS B 16 SHEET 4 G 6 GLY B 316 ILE B 319 -1 O ALA B 318 N VAL B 71 SHEET 5 G 6 LEU B 127 VAL B 130 -1 N LEU B 127 O TRP B 317 SHEET 6 G 6 PHE B 389 TRP B 390 1 O PHE B 389 N VAL B 130 SHEET 1 H 4 ILE B 181 PHE B 183 0 SHEET 2 H 4 GLY B 264 TRP B 270 1 O GLY B 265 N ILE B 181 SHEET 3 H 4 ARG B 137 ARG B 142 -1 N ARG B 142 O GLY B 265 SHEET 4 H 4 LEU B 290 MET B 293 -1 O MET B 293 N TYR B 139 SHEET 1 I 2 TYR B 212 GLU B 214 0 SHEET 2 I 2 LYS B 217 LYS B 219 -1 O LYS B 219 N TYR B 212 SHEET 1 J 2 TYR B 354 LYS B 357 0 SHEET 2 J 2 LYS B 360 TYR B 363 -1 O VAL B 362 N ASP B 355 LINK O4 LGU C 1 C1 BEM C 2 1555 1555 1.43 LINK O4 LGU D 1 C1 BEM D 2 1555 1555 1.43 LINK OD2 ASP A 171 CA CA A 503 1555 1555 2.31 LINK OD1 ASN A 173 CA CA A 503 1555 1555 2.32 LINK OD1 ASN A 175 CA CA A 503 1555 1555 2.57 LINK O LYS A 177 CA CA A 503 1555 1555 2.32 LINK OD2 ASP A 179 CA CA A 503 1555 1555 2.32 LINK OE1 GLU A 180 CA CA A 503 1555 1555 2.33 LINK OE2 GLU A 180 CA CA A 503 1555 1555 2.78 LINK OD1 ASP B 171 CA CA B 503 1555 1555 2.31 LINK OD1 ASN B 173 CA CA B 503 1555 1555 2.32 LINK OD1 ASN B 175 CA CA B 503 1555 1555 2.54 LINK O LYS B 177 CA CA B 503 1555 1555 2.32 LINK OD2 ASP B 179 CA CA B 503 1555 1555 2.32 LINK OE1 GLU B 180 CA CA B 503 1555 1555 2.32 LINK OE2 GLU B 180 CA CA B 503 1555 1555 2.75 CISPEP 1 ILE A 311 PRO A 312 0 -2.64 CISPEP 2 ILE B 311 PRO B 312 0 -1.18 CRYST1 79.759 67.533 90.693 90.00 93.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012538 0.000000 0.000730 0.00000 SCALE2 0.000000 0.014808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011045 0.00000