HEADER OXIDOREDUCTASE 08-DEC-11 3VM4 TITLE CYTOCHROME P450SP ALPHA (CYP152B1) IN COMPLEX WITH (R)-IBUPROPHEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID ALPHA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 9-415; COMPND 5 SYNONYM: CYTOCHROME P450SP ALPHA, CYP152B1; COMPND 6 EC: 1.11.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-AX2 KEYWDS CYTOCHROME P450, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,O.SHOJI,S.NAGANO,H.SUGIMOTO,Y.SHIRO,Y.WATANABE REVDAT 3 08-NOV-23 3VM4 1 REMARK REVDAT 2 14-AUG-13 3VM4 1 JRNL REVDAT 1 09-MAY-12 3VM4 0 JRNL AUTH T.FUJISHIRO,O.SHOJI,N.KAWAKAMI,T.WATANABE,H.SUGIMOTO, JRNL AUTH 2 Y.SHIRO,Y.WATANABE JRNL TITL CHIRAL-SUBSTRATE-ASSISTED STEREOSELECTIVE EPOXIDATION JRNL TITL 2 CATALYZED BY H2O2-DEPENDENT CYTOCHROME P450SP ALPHA JRNL REF CHEM ASIAN J V. 7 2286 2012 JRNL REFN ISSN 1861-4728 JRNL PMID 22700535 JRNL DOI 10.1002/ASIA.201200250 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3441 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4699 ; 1.193 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;30.914 ;22.164 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;12.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2725 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 0.838 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3285 ; 1.450 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 2.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 3.419 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3441 ; 1.164 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5710 -39.1090 -14.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.2230 REMARK 3 T33: 0.1334 T12: -0.0392 REMARK 3 T13: -0.0022 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.8575 L22: 0.1458 REMARK 3 L33: 1.3587 L12: -0.0432 REMARK 3 L13: -0.5925 L23: -0.1552 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.2034 S13: 0.1000 REMARK 3 S21: -0.0339 S22: 0.0227 S23: 0.0044 REMARK 3 S31: 0.0050 S32: 0.0082 S33: -0.0663 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5820 -40.5990 -19.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.2638 REMARK 3 T33: 0.1801 T12: -0.0277 REMARK 3 T13: -0.0049 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.9937 L22: -0.0202 REMARK 3 L33: -3.1802 L12: 2.2297 REMARK 3 L13: 0.1785 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0664 S13: 0.0716 REMARK 3 S21: -0.0556 S22: -0.0147 S23: 0.0334 REMARK 3 S31: -0.0799 S32: -0.0680 S33: -0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3VM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, 17.5% MPD, 25MM MES, 10% REMARK 280 GLYCEROL, 5MM (R)-IBUPROPHEN, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.62100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.24200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.24200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.62100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 -124.36 54.61 REMARK 500 THR A 76 -89.68 -133.15 REMARK 500 MET A 102 40.02 -99.28 REMARK 500 PRO A 177 -18.48 -49.99 REMARK 500 ASP A 221 -168.13 -79.26 REMARK 500 PHE A 287 -76.04 -145.56 REMARK 500 ALA A 327 -60.43 73.66 REMARK 500 ALA A 381 -50.64 -121.16 REMARK 500 PHE A 406 89.11 67.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 HEM A 501 NA 98.2 REMARK 620 3 HEM A 501 NB 91.0 88.7 REMARK 620 4 HEM A 501 NC 86.0 175.8 90.9 REMARK 620 5 HEM A 501 ND 93.4 91.0 175.6 89.1 REMARK 620 6 HOH A 554 O 173.3 78.3 94.7 97.6 80.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IZP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AWM RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PALMITIC ACID. DBREF 3VM4 A 9 415 UNP O24782 O24782_PSEPA 9 415 SEQRES 1 A 407 GLY PRO ASP GLU THR LEU SER LEU LEU ALA ASP PRO TYR SEQRES 2 A 407 ARG PHE ILE SER ARG GLN CYS GLN ARG LEU GLY ALA ASN SEQRES 3 A 407 ALA PHE GLU SER ARG PHE LEU LEU LYS LYS THR ASN CYS SEQRES 4 A 407 LEU LYS GLY ALA LYS ALA ALA GLU ILE PHE TYR ASP THR SEQRES 5 A 407 THR ARG PHE GLU ARG GLU GLY ALA MET PRO VAL ALA ILE SEQRES 6 A 407 GLN LYS THR LEU LEU GLY GLN GLY GLY VAL GLN GLY LEU SEQRES 7 A 407 ASP GLY GLU THR HIS ARG HIS ARG LYS GLN MET PHE MET SEQRES 8 A 407 GLY LEU MET THR PRO GLU ARG VAL ARG ALA LEU ALA GLN SEQRES 9 A 407 LEU PHE GLU ALA GLU TRP ARG ARG ALA VAL PRO GLY TRP SEQRES 10 A 407 THR ARG LYS GLY GLU ILE VAL PHE TYR ASP GLU LEU HIS SEQRES 11 A 407 GLU PRO LEU THR ARG ALA VAL CYS ALA TRP ALA GLY VAL SEQRES 12 A 407 PRO LEU PRO ASP ASP GLU ALA GLY ASN ARG ALA GLY GLU SEQRES 13 A 407 LEU ARG ALA LEU PHE ASP ALA ALA GLY SER ALA SER PRO SEQRES 14 A 407 ARG HIS LEU TRP SER ARG LEU ALA ARG ARG ARG VAL ASP SEQRES 15 A 407 ALA TRP ALA LYS ARG ILE ILE GLU GLY ILE ARG ALA GLY SEQRES 16 A 407 SER ILE GLY SER GLY SER GLY THR ALA ALA TYR ALA ILE SEQRES 17 A 407 ALA TRP HIS ARG ASP ARG HIS ASP ASP LEU LEU SER PRO SEQRES 18 A 407 HIS VAL ALA ALA VAL GLU LEU VAL ASN VAL LEU ARG PRO SEQRES 19 A 407 THR VAL ALA ILE ALA VAL TYR ILE THR PHE VAL ALA HIS SEQRES 20 A 407 ALA LEU GLN THR CYS SER GLY ILE ARG ALA ALA LEU VAL SEQRES 21 A 407 GLN GLN PRO ASP TYR ALA GLU LEU PHE VAL GLN GLU VAL SEQRES 22 A 407 ARG ARG PHE TYR PRO PHE PHE PRO ALA VAL VAL ALA ARG SEQRES 23 A 407 ALA SER GLN ASP PHE GLU TRP GLU GLY MET ALA PHE PRO SEQRES 24 A 407 GLU GLY ARG GLN VAL VAL LEU ASP LEU TYR GLY SER ASN SEQRES 25 A 407 HIS ASP ALA ALA THR TRP ALA ASP PRO GLN GLU PHE ARG SEQRES 26 A 407 PRO GLU ARG PHE ARG ALA TRP ASP GLU ASP SER PHE ASN SEQRES 27 A 407 PHE ILE PRO GLN GLY GLY GLY ASP HIS TYR LEU GLY HIS SEQRES 28 A 407 ARG CYS PRO GLY GLU TRP ILE VAL LEU ALA ILE MET LYS SEQRES 29 A 407 VAL ALA ALA HIS LEU LEU VAL ASN ALA MET ARG TYR ASP SEQRES 30 A 407 VAL PRO ASP GLN ASP LEU SER ILE ASP PHE ALA ARG LEU SEQRES 31 A 407 PRO ALA LEU PRO LYS SER GLY PHE VAL MET ARG ASN VAL SEQRES 32 A 407 HIS ILE GLY GLY HET HEM A 501 43 HET IZP A 1 15 HET MRD A 416 8 HET MRD A 417 8 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IZP (2R)-2-[4-(2-METHYLPROPYL)PHENYL]PROPANOIC ACID HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN HEM HEME HETSYN IZP (R)-IBUPROFEN FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 IZP C13 H18 O2 FORMUL 4 MRD 2(C6 H14 O2) FORMUL 6 HOH *274(H2 O) HELIX 1 1 GLU A 12 ASP A 19 1 8 HELIX 2 2 ARG A 22 GLY A 32 1 11 HELIX 3 3 GLY A 50 TYR A 58 1 9 HELIX 4 4 PRO A 70 LYS A 75 1 6 HELIX 5 5 GLY A 82 LEU A 86 5 5 HELIX 6 6 ASP A 87 GLY A 100 1 14 HELIX 7 7 THR A 103 GLY A 129 1 27 HELIX 8 8 PHE A 133 GLY A 150 1 18 HELIX 9 9 PRO A 154 ASP A 156 5 3 HELIX 10 10 GLU A 157 ALA A 171 1 15 HELIX 11 11 PRO A 177 ALA A 202 1 26 HELIX 12 12 THR A 211 HIS A 219 1 9 HELIX 13 13 SER A 228 ALA A 245 1 18 HELIX 14 14 ALA A 245 CYS A 260 1 16 HELIX 15 15 GLY A 262 GLN A 270 1 9 HELIX 16 16 ASP A 272 TYR A 285 1 14 HELIX 17 17 LEU A 316 HIS A 321 1 6 HELIX 18 18 ASP A 322 ALA A 327 1 6 HELIX 19 19 ARG A 333 TRP A 340 5 8 HELIX 20 20 GLY A 363 ALA A 381 1 19 SHEET 1 A 5 ALA A 35 PHE A 40 0 SHEET 2 A 5 LYS A 43 LYS A 49 -1 O CYS A 47 N PHE A 36 SHEET 3 A 5 GLN A 311 ASP A 315 1 O VAL A 313 N LEU A 48 SHEET 4 A 5 ALA A 290 ALA A 295 -1 N ALA A 293 O VAL A 312 SHEET 5 A 5 PHE A 63 GLU A 64 -1 N GLU A 64 O ARG A 294 SHEET 1 B 3 GLU A 130 VAL A 132 0 SHEET 2 B 3 VAL A 407 HIS A 412 -1 O MET A 408 N ILE A 131 SHEET 3 B 3 ARG A 383 ASP A 385 -1 N ASP A 385 O ARG A 409 SHEET 1 C 2 PHE A 299 TRP A 301 0 SHEET 2 C 2 MET A 304 PHE A 306 -1 O PHE A 306 N PHE A 299 LINK SG CYS A 361 FE HEM A 501 1555 1555 2.38 LINK FE HEM A 501 O HOH A 554 1555 1555 2.71 CISPEP 1 LEU A 398 PRO A 399 0 -3.91 SITE 1 AC1 25 IZP A 1 TYR A 58 ARG A 65 GLN A 84 SITE 2 AC1 25 HIS A 91 LYS A 95 PHE A 98 MET A 102 SITE 3 AC1 25 ASN A 238 PRO A 242 THR A 243 ILE A 246 SITE 4 AC1 25 PHE A 287 PHE A 288 VAL A 291 LEU A 316 SITE 5 AC1 25 GLN A 350 HIS A 359 CYS A 361 PRO A 362 SITE 6 AC1 25 GLY A 363 VAL A 367 HOH A 437 HOH A 554 SITE 7 AC1 25 HOH A 612 SITE 1 AC2 8 PHE A 169 ARG A 241 PRO A 242 ALA A 245 SITE 2 AC2 8 PHE A 287 PHE A 288 HEM A 501 HOH A 554 SITE 1 AC3 3 MET A 99 MET A 102 TYR A 356 SITE 1 AC4 6 HIS A 255 THR A 259 CYS A 260 PHE A 284 SITE 2 AC4 6 TYR A 285 HOH A 552 CRYST1 94.390 94.390 112.863 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010594 0.006117 0.000000 0.00000 SCALE2 0.000000 0.012233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008860 0.00000