HEADER HYDROLASE 21-DEC-11 3VN4 TITLE CRYSTAL STRUCTURE OF THE EXOSITE-CONTAINING FRAGMENT OF HUMAN ADAMTS13 TITLE 2 (P475S MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN COMPND 3 MOTIFS 13; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: DTCS DOMAINS, UNP RESIDUES 287-685; COMPND 6 SYNONYM: ADAM-TS 13, ADAM-TS13, ADAMTS-13, VON WILLEBRAND FACTOR- COMPND 7 CLEAVING PROTEASE, VWF-CP, VWF-CLEAVING PROTEASE; COMPND 8 EC: 3.4.24.87; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAMTS13; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNT1-; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCM-NIDSP KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NAKAYAMA,M.AKIYAMA,S.TAKEDA,K.KOKAME,J.TAKAGI,T.MIYATA REVDAT 3 08-NOV-23 3VN4 1 HETSYN REVDAT 2 29-JUL-20 3VN4 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 26-DEC-12 3VN4 0 JRNL AUTH D.NAKAYAMA,M.AKIYAMA,S.TAKEDA,K.KOKAME,J.TAKAGI,T.MIYATA JRNL TITL STRUCTURAL ANALYSIS AND BIOCHEMICAL STUDIES OF ADAMTS13 JRNL TITL 2 P475S MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.AKIYAMA,S.TAKEDA,K.KOKAME,J.TAKAGI,T.MIYATA REMARK 1 TITL CRYSTAL STRUCTURES OF THE NONCATALYTIC DOMAINS OF ADAMTS13 REMARK 1 TITL 2 REVEAL MULTIPLE DISCONTINUOUS EXOSITES FOR VON WILLEBRAND REMARK 1 TITL 3 FACTOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 106 19274 2009 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 19880749 REMARK 1 DOI 10.1073/PNAS.0909755106 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.AKIYAMA,K.KOKAME,T.MIYATA REMARK 1 TITL ADAMTS13 P475S POLYMORPHISM CAUSES A LOWERED ENZYMATIC REMARK 1 TITL 2 ACTIVITY AND UREA LABILITY IN VITRO REMARK 1 REF J.THROMB.HAEMOST. V. 6 1830 2008 REMARK 1 REFN ISSN 1538-7933 REMARK 1 PMID 18665921 REMARK 1 DOI 10.1111/J.1538-7836.2008.03109.X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 738 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99000 REMARK 3 B22 (A**2) : 2.48000 REMARK 3 B33 (A**2) : -2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3051 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2131 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4138 ; 0.950 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5108 ; 0.736 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 5.237 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;29.703 ;22.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;13.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3385 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 0.348 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 762 ; 0.033 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2984 ; 0.666 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 0.950 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1154 ; 1.691 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 528 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7837 33.5148 -13.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.3901 REMARK 3 T33: 0.2144 T12: -0.0361 REMARK 3 T13: -0.1061 T23: 0.2291 REMARK 3 L TENSOR REMARK 3 L11: 1.7098 L22: -0.0636 REMARK 3 L33: 3.7311 L12: -0.5762 REMARK 3 L13: 2.3501 L23: -0.1686 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: -0.1361 S13: 0.1544 REMARK 3 S21: 0.0008 S22: -0.0024 S23: -0.0652 REMARK 3 S31: 0.2389 S32: -0.3072 S33: -0.1101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 529 A 682 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8116 17.8240 10.7088 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2402 REMARK 3 T33: 0.1184 T12: 0.1003 REMARK 3 T13: -0.1031 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.8939 L22: 1.0224 REMARK 3 L33: 4.6100 L12: -1.1038 REMARK 3 L13: 1.4486 L23: -1.6853 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: -0.3041 S13: -0.0954 REMARK 3 S21: -0.2874 S22: -0.1194 S23: 0.0444 REMARK 3 S31: 0.1074 S32: 0.0897 S33: -0.0924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000095252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : FIXED EXIT SI (111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3GHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1500, 0.1M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.68900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.68900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 285 REMARK 465 ARG A 286 REMARK 465 ARG A 287 REMARK 465 PRO A 288 REMARK 465 GLN A 289 REMARK 465 PRO A 290 REMARK 465 GLY A 291 REMARK 465 SER A 292 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 HIS A 295 REMARK 465 PRO A 296 REMARK 465 PRO A 297 REMARK 465 ALA A 325 REMARK 465 ARG A 326 REMARK 465 GLU A 327 REMARK 465 ARG A 459 REMARK 465 SER A 460 REMARK 465 SER A 461 REMARK 465 PRO A 462 REMARK 465 GLY A 463 REMARK 465 GLY A 464 REMARK 465 ALA A 465 REMARK 465 ARG A 683 REMARK 465 GLN A 684 REMARK 465 ALA A 685 REMARK 465 SER A 686 REMARK 465 ARG A 687 REMARK 465 LEU A 688 REMARK 465 GLU A 689 REMARK 465 ASN A 690 REMARK 465 LEU A 691 REMARK 465 TYR A 692 REMARK 465 PHE A 693 REMARK 465 GLN A 694 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 329 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 FUC C 1 O5 BGC C 2 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 339 -67.56 72.92 REMARK 500 CYS A 360 54.34 -143.71 REMARK 500 ASN A 412 20.68 -140.93 REMARK 500 HIS A 476 -61.24 -137.98 REMARK 500 ARG A 484 25.79 -78.83 REMARK 500 HIS A 485 40.30 71.54 REMARK 500 THR A 563 -12.42 -146.13 REMARK 500 ALA A 564 -130.18 -77.79 REMARK 500 ALA A 606 -147.89 56.52 REMARK 500 THR A 633 -159.06 -81.29 REMARK 500 ASP A 635 -169.24 -75.75 REMARK 500 ARG A 636 49.04 -95.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GHM RELATED DB: PDB REMARK 900 RELATED ID: 3GHN RELATED DB: PDB DBREF 3VN4 A 287 685 UNP Q76LX8 ATS13_HUMAN 287 685 SEQADV 3VN4 GLY A 285 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 ARG A 286 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 SER A 475 UNP Q76LX8 PRO 475 ENGINEERED MUTATION SEQADV 3VN4 SER A 686 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 ARG A 687 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 LEU A 688 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 GLU A 689 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 ASN A 690 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 LEU A 691 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 TYR A 692 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 PHE A 693 UNP Q76LX8 EXPRESSION TAG SEQADV 3VN4 GLN A 694 UNP Q76LX8 EXPRESSION TAG SEQRES 1 A 410 GLY ARG ARG PRO GLN PRO GLY SER ALA GLY HIS PRO PRO SEQRES 2 A 410 ASP ALA GLN PRO GLY LEU TYR TYR SER ALA ASN GLU GLN SEQRES 3 A 410 CYS ARG VAL ALA PHE GLY PRO LYS ALA VAL ALA CYS THR SEQRES 4 A 410 PHE ALA ARG GLU HIS LEU ASP MET CYS GLN ALA LEU SER SEQRES 5 A 410 CYS HIS THR ASP PRO LEU ASP GLN SER SER CYS SER ARG SEQRES 6 A 410 LEU LEU VAL PRO LEU LEU ASP GLY THR GLU CYS GLY VAL SEQRES 7 A 410 GLU LYS TRP CYS SER LYS GLY ARG CYS ARG SER LEU VAL SEQRES 8 A 410 GLU LEU THR PRO ILE ALA ALA VAL HIS GLY ARG TRP SER SEQRES 9 A 410 SER TRP GLY PRO ARG SER PRO CYS SER ARG SER CYS GLY SEQRES 10 A 410 GLY GLY VAL VAL THR ARG ARG ARG GLN CYS ASN ASN PRO SEQRES 11 A 410 ARG PRO ALA PHE GLY GLY ARG ALA CYS VAL GLY ALA ASP SEQRES 12 A 410 LEU GLN ALA GLU MET CYS ASN THR GLN ALA CYS GLU LYS SEQRES 13 A 410 THR GLN LEU GLU PHE MET SER GLN GLN CYS ALA ARG THR SEQRES 14 A 410 ASP GLY GLN PRO LEU ARG SER SER PRO GLY GLY ALA SER SEQRES 15 A 410 PHE TYR HIS TRP GLY ALA ALA VAL SER HIS SER GLN GLY SEQRES 16 A 410 ASP ALA LEU CYS ARG HIS MET CYS ARG ALA ILE GLY GLU SEQRES 17 A 410 SER PHE ILE MET LYS ARG GLY ASP SER PHE LEU ASP GLY SEQRES 18 A 410 THR ARG CYS MET PRO SER GLY PRO ARG GLU ASP GLY THR SEQRES 19 A 410 LEU SER LEU CYS VAL SER GLY SER CYS ARG THR PHE GLY SEQRES 20 A 410 CYS ASP GLY ARG MET ASP SER GLN GLN VAL TRP ASP ARG SEQRES 21 A 410 CYS GLN VAL CYS GLY GLY ASP ASN SER THR CYS SER PRO SEQRES 22 A 410 ARG LYS GLY SER PHE THR ALA GLY ARG ALA ARG GLU TYR SEQRES 23 A 410 VAL THR PHE LEU THR VAL THR PRO ASN LEU THR SER VAL SEQRES 24 A 410 TYR ILE ALA ASN HIS ARG PRO LEU PHE THR HIS LEU ALA SEQRES 25 A 410 VAL ARG ILE GLY GLY ARG TYR VAL VAL ALA GLY LYS MET SEQRES 26 A 410 SER ILE SER PRO ASN THR THR TYR PRO SER LEU LEU GLU SEQRES 27 A 410 ASP GLY ARG VAL GLU TYR ARG VAL ALA LEU THR GLU ASP SEQRES 28 A 410 ARG LEU PRO ARG LEU GLU GLU ILE ARG ILE TRP GLY PRO SEQRES 29 A 410 LEU GLN GLU ASP ALA ASP ILE GLN VAL TYR ARG ARG TYR SEQRES 30 A 410 GLY GLU GLU TYR GLY ASN LEU THR ARG PRO ASP ILE THR SEQRES 31 A 410 PHE THR TYR PHE GLN PRO LYS PRO ARG GLN ALA SER ARG SEQRES 32 A 410 LEU GLU ASN LEU TYR PHE GLN MODRES 3VN4 SER A 399 SER GLYCOSYLATION SITE MODRES 3VN4 ASN A 614 ASN GLYCOSYLATION SITE MODRES 3VN4 ASN A 552 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUC C 1 10 HET BGC C 2 11 HET NAG A 900 14 HET BMA A 905 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 3 BGC C6 H12 O6 FORMUL 5 BMA C6 H12 O6 FORMUL 6 HOH *45(H2 O) HELIX 1 1 GLN A 300 TYR A 304 5 5 HELIX 2 2 SER A 306 GLY A 316 1 11 HELIX 3 3 LEU A 374 THR A 378 1 5 HELIX 4 4 THR A 441 ARG A 452 1 12 HELIX 5 5 GLN A 478 ARG A 484 1 7 HELIX 6 6 GLY A 662 ARG A 670 5 9 SHEET 1 A 2 LEU A 335 CYS A 337 0 SHEET 2 A 2 SER A 348 LEU A 350 -1 O SER A 348 N CYS A 337 SHEET 1 B 2 LYS A 364 SER A 367 0 SHEET 2 B 2 ARG A 370 SER A 373 -1 O ARG A 370 N SER A 367 SHEET 1 C 2 GLY A 403 ARG A 408 0 SHEET 2 C 2 LEU A 428 CYS A 433 -1 O CYS A 433 N GLY A 403 SHEET 1 D 3 TRP A 470 GLY A 471 0 SHEET 2 D 3 MET A 486 ALA A 489 -1 O ARG A 488 N GLY A 471 SHEET 3 D 3 ILE A 495 LYS A 497 -1 O MET A 496 N CYS A 487 SHEET 1 E 2 LEU A 519 VAL A 523 0 SHEET 2 E 2 SER A 526 PHE A 530 -1 O ARG A 528 N LEU A 521 SHEET 1 F 6 CYS A 555 PHE A 562 0 SHEET 2 F 6 ILE A 673 PRO A 680 -1 O GLN A 679 N SER A 556 SHEET 3 F 6 THR A 581 ASN A 587 -1 N TYR A 584 O THR A 676 SHEET 4 F 6 PRO A 638 TRP A 646 -1 O ILE A 643 N ILE A 585 SHEET 5 F 6 ARG A 625 LEU A 632 -1 N ALA A 631 O LEU A 640 SHEET 6 F 6 THR A 615 TYR A 617 -1 N TYR A 617 O VAL A 626 SHEET 1 G 4 TYR A 570 VAL A 576 0 SHEET 2 G 4 ALA A 653 ARG A 659 -1 O ILE A 655 N LEU A 574 SHEET 3 G 4 THR A 593 ILE A 599 -1 N ARG A 598 O ASP A 654 SHEET 4 G 4 ARG A 602 VAL A 605 -1 O ARG A 602 N ILE A 599 SSBOND 1 CYS A 311 CYS A 337 1555 1555 2.03 SSBOND 2 CYS A 322 CYS A 347 1555 1555 2.03 SSBOND 3 CYS A 332 CYS A 366 1555 1555 2.03 SSBOND 4 CYS A 360 CYS A 371 1555 1555 2.04 SSBOND 5 CYS A 396 CYS A 433 1555 1555 2.03 SSBOND 6 CYS A 400 CYS A 438 1555 1555 2.04 SSBOND 7 CYS A 411 CYS A 423 1555 1555 2.03 SSBOND 8 CYS A 450 CYS A 487 1555 1555 2.05 SSBOND 9 CYS A 483 CYS A 522 1555 1555 2.03 SSBOND 10 CYS A 508 CYS A 527 1555 1555 2.04 SSBOND 11 CYS A 532 CYS A 548 1555 1555 1.97 SSBOND 12 CYS A 545 CYS A 555 1555 1555 2.02 LINK CD1 TRP A 387 C1 BMA A 905 1555 1555 1.48 LINK OG SER A 399 C1 FUC C 1 1555 1555 1.44 LINK ND2 ASN A 552 C1 NAG A 900 1555 1555 1.45 LINK ND2 ASN A 614 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O3 FUC C 1 C1 BGC C 2 1555 1555 1.35 CISPEP 1 THR A 378 PRO A 379 0 3.20 CISPEP 2 ASN A 413 PRO A 414 0 -1.51 CISPEP 3 TYR A 617 PRO A 618 0 -6.90 CRYST1 153.378 53.243 76.615 90.00 111.56 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006520 0.000000 0.002576 0.00000 SCALE2 0.000000 0.018782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014034 0.00000