HEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-JAN-12 3VNT TITLE CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF HUMAN VEGFR2 WITH A [1, TITLE 2 3]THIAZOLO[5,4-B]PYRIDINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 806-1171; COMPND 5 SYNONYM: VEGFR-2, FETAL LIVER KINASE 1, FLK-1, KINASE INSERT DOMAIN COMPND 6 RECEPTOR, KDR, PROTEIN-TYROSINE KINASE RECEPTOR FLK-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDR, FLK1, VEGFR2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS VEGFR2, KINASE DOMAIN, TYROSIN-PROTEIN KINASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.OKI REVDAT 3 20-MAR-24 3VNT 1 REMARK SEQADV REVDAT 2 07-AUG-13 3VNT 1 JRNL REVDAT 1 11-APR-12 3VNT 0 JRNL AUTH M.OKANIWA,M.HIROSE,T.IMADA,T.OHASHI,Y.HAYASHI,T.MIYAZAKI, JRNL AUTH 2 T.ARITA,M.YABUKI,K.KAKOI,J.KATO,T.TAKAGI,T.KAWAMOTO,S.YAO, JRNL AUTH 3 A.SUMITA,S.TSUTSUMI,T.TOTTORI,H.OKI,B.C.SANG,J.YANO, JRNL AUTH 4 K.AERTGEERTS,S.YOSHIDA,T.ISHIKAWA JRNL TITL DESIGN AND SYNTHESIS OF NOVEL DFG-OUT RAF/VASCULAR JRNL TITL 2 ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (VEGFR2) INHIBITORS. 1. JRNL TITL 3 EXPLORATION OF [5,6]-FUSED BICYCLIC SCAFFOLDS JRNL REF J.MED.CHEM. V. 55 3452 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22376051 JRNL DOI 10.1021/JM300126X REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 44402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3154 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2571 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3478 ; 1.172 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 5.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.679 ;22.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;12.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1994 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1161 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1762 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 218 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.108 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1565 ; 2.628 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2460 ; 3.871 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 6.597 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 9.314 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 813 A 920 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7462 -30.2654 -8.7863 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.0021 REMARK 3 T33: 0.0128 T12: 0.0021 REMARK 3 T13: -0.0065 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.1700 L22: 0.6997 REMARK 3 L33: 0.3136 L12: -0.0243 REMARK 3 L13: 0.1838 L23: -0.0976 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0407 S13: 0.0282 REMARK 3 S21: 0.1022 S22: 0.0088 S23: -0.0512 REMARK 3 S31: 0.0272 S32: -0.0051 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 921 A 1168 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4422 -28.9335 -29.1500 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: 0.0239 REMARK 3 T33: 0.0178 T12: 0.0042 REMARK 3 T13: 0.0041 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.2553 L22: 0.0834 REMARK 3 L33: 0.0604 L12: 0.1459 REMARK 3 L13: 0.1241 L23: 0.0709 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0447 S13: 0.0170 REMARK 3 S21: -0.0598 S22: -0.0319 S23: -0.0036 REMARK 3 S31: 0.0446 S32: 0.0320 S33: 0.0297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2001 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7574 -28.6107 -14.3362 REMARK 3 T TENSOR REMARK 3 T11: -0.0625 T22: 0.0564 REMARK 3 T33: 0.0396 T12: 0.0054 REMARK 3 T13: 0.0016 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.6011 L22: 3.0214 REMARK 3 L33: 1.8834 L12: -2.4556 REMARK 3 L13: -2.2120 L23: 2.1289 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.1750 S13: 0.0822 REMARK 3 S21: -0.0443 S22: 0.0228 S23: 0.0323 REMARK 3 S31: 0.1975 S32: -0.3324 S33: 0.0351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000095277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 880-1440MM TRI-SODIUM REMARK 280 CITRATE, PH 7.0-8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.80750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.30900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.80750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.30900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 804 REMARK 465 ALA A 805 REMARK 465 MET A 806 REMARK 465 ASP A 807 REMARK 465 PRO A 808 REMARK 465 ASP A 809 REMARK 465 GLU A 810 REMARK 465 LEU A 811 REMARK 465 GLU A 990 REMARK 465 ALA A 991 REMARK 465 PRO A 992 REMARK 465 GLU A 993 REMARK 465 ASP A 994 REMARK 465 LEU A 995 REMARK 465 GLN A 1169 REMARK 465 GLN A 1170 REMARK 465 ASP A 1171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1027 -7.69 75.79 REMARK 500 ASP A1028 44.43 -146.42 REMARK 500 SER A1037 -169.90 -105.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0JA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DBN RELATED DB: PDB DBREF 3VNT A 806 1171 UNP P35968 VGFR2_HUMAN 806 1171 SEQADV 3VNT GLY A 804 UNP P35968 EXPRESSION TAG SEQADV 3VNT ALA A 805 UNP P35968 EXPRESSION TAG SEQADV 3VNT A UNP P35968 THR 940 DELETION SEQADV 3VNT A UNP P35968 LYS 941 DELETION SEQADV 3VNT A UNP P35968 GLY 942 DELETION SEQADV 3VNT A UNP P35968 ALA 943 DELETION SEQADV 3VNT A UNP P35968 ARG 944 DELETION SEQADV 3VNT A UNP P35968 PHE 945 DELETION SEQADV 3VNT A UNP P35968 ARG 946 DELETION SEQADV 3VNT A UNP P35968 GLN 947 DELETION SEQADV 3VNT A UNP P35968 GLY 948 DELETION SEQADV 3VNT A UNP P35968 LYS 949 DELETION SEQADV 3VNT A UNP P35968 ASP 950 DELETION SEQADV 3VNT A UNP P35968 TYR 951 DELETION SEQADV 3VNT A UNP P35968 VAL 952 DELETION SEQADV 3VNT A UNP P35968 GLY 953 DELETION SEQADV 3VNT A UNP P35968 ALA 954 DELETION SEQADV 3VNT A UNP P35968 ILE 955 DELETION SEQADV 3VNT A UNP P35968 PRO 956 DELETION SEQADV 3VNT A UNP P35968 VAL 957 DELETION SEQADV 3VNT A UNP P35968 ASP 958 DELETION SEQADV 3VNT A UNP P35968 LEU 959 DELETION SEQADV 3VNT A UNP P35968 LYS 960 DELETION SEQADV 3VNT A UNP P35968 ARG 961 DELETION SEQADV 3VNT A UNP P35968 ARG 962 DELETION SEQADV 3VNT A UNP P35968 LEU 963 DELETION SEQADV 3VNT A UNP P35968 ASP 964 DELETION SEQADV 3VNT A UNP P35968 SER 965 DELETION SEQADV 3VNT A UNP P35968 ILE 966 DELETION SEQADV 3VNT A UNP P35968 THR 967 DELETION SEQADV 3VNT A UNP P35968 SER 968 DELETION SEQADV 3VNT A UNP P35968 SER 969 DELETION SEQADV 3VNT A UNP P35968 GLN 970 DELETION SEQADV 3VNT A UNP P35968 SER 971 DELETION SEQADV 3VNT A UNP P35968 SER 972 DELETION SEQADV 3VNT A UNP P35968 ALA 973 DELETION SEQADV 3VNT A UNP P35968 SER 974 DELETION SEQADV 3VNT A UNP P35968 SER 975 DELETION SEQADV 3VNT A UNP P35968 GLY 976 DELETION SEQADV 3VNT A UNP P35968 PHE 977 DELETION SEQADV 3VNT A UNP P35968 VAL 978 DELETION SEQADV 3VNT A UNP P35968 GLU 979 DELETION SEQADV 3VNT A UNP P35968 GLU 980 DELETION SEQADV 3VNT A UNP P35968 LYS 981 DELETION SEQADV 3VNT A UNP P35968 SER 982 DELETION SEQADV 3VNT A UNP P35968 LEU 983 DELETION SEQADV 3VNT A UNP P35968 SER 984 DELETION SEQADV 3VNT A UNP P35968 ASP 985 DELETION SEQADV 3VNT A UNP P35968 VAL 986 DELETION SEQADV 3VNT A UNP P35968 GLU 987 DELETION SEQADV 3VNT A UNP P35968 GLU 988 DELETION SEQADV 3VNT A UNP P35968 GLU 989 DELETION SEQRES 1 A 318 GLY ALA MET ASP PRO ASP GLU LEU PRO LEU ASP GLU HIS SEQRES 2 A 318 CYS GLU ARG LEU PRO TYR ASP ALA SER LYS TRP GLU PHE SEQRES 3 A 318 PRO ARG ASP ARG LEU LYS LEU GLY LYS PRO LEU GLY ARG SEQRES 4 A 318 GLY ALA PHE GLY GLN VAL ILE GLU ALA ASP ALA PHE GLY SEQRES 5 A 318 ILE ASP LYS THR ALA THR CYS ARG THR VAL ALA VAL LYS SEQRES 6 A 318 MET LEU LYS GLU GLY ALA THR HIS SER GLU HIS ARG ALA SEQRES 7 A 318 LEU MET SER GLU LEU LYS ILE LEU ILE HIS ILE GLY HIS SEQRES 8 A 318 HIS LEU ASN VAL VAL ASN LEU LEU GLY ALA CYS THR LYS SEQRES 9 A 318 PRO GLY GLY PRO LEU MET VAL ILE VAL GLU PHE CYS LYS SEQRES 10 A 318 PHE GLY ASN LEU SER THR TYR LEU ARG SER LYS ARG ASN SEQRES 11 A 318 GLU PHE VAL PRO TYR LYS GLU ALA PRO GLU ASP LEU TYR SEQRES 12 A 318 LYS ASP PHE LEU THR LEU GLU HIS LEU ILE CYS TYR SER SEQRES 13 A 318 PHE GLN VAL ALA LYS GLY MET GLU PHE LEU ALA SER ARG SEQRES 14 A 318 LYS CYS ILE HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU SEQRES 15 A 318 LEU SER GLU LYS ASN VAL VAL LYS ILE CYS ASP PHE GLY SEQRES 16 A 318 LEU ALA ARG ASP ILE TYR LYS ASP PRO ASP TYR VAL ARG SEQRES 17 A 318 LYS GLY ASP ALA ARG LEU PRO LEU LYS TRP MET ALA PRO SEQRES 18 A 318 GLU THR ILE PHE ASP ARG VAL TYR THR ILE GLN SER ASP SEQRES 19 A 318 VAL TRP SER PHE GLY VAL LEU LEU TRP GLU ILE PHE SER SEQRES 20 A 318 LEU GLY ALA SER PRO TYR PRO GLY VAL LYS ILE ASP GLU SEQRES 21 A 318 GLU PHE CYS ARG ARG LEU LYS GLU GLY THR ARG MET ARG SEQRES 22 A 318 ALA PRO ASP TYR THR THR PRO GLU MET TYR GLN THR MET SEQRES 23 A 318 LEU ASP CYS TRP HIS GLY GLU PRO SER GLN ARG PRO THR SEQRES 24 A 318 PHE SER GLU LEU VAL GLU HIS LEU GLY ASN LEU LEU GLN SEQRES 25 A 318 ALA ASN ALA GLN GLN ASP HET 0JA A2001 38 HET EDO A2002 4 HET EDO A2003 4 HET EDO A2004 4 HETNAM 0JA 2-CHLORO-3-(1-CYANOCYCLOPROPYL)-N-[5-({2- HETNAM 2 0JA [(CYCLOPROPYLCARBONYL)AMINO][1,3]THIAZOLO[5,4- HETNAM 3 0JA B]PYRIDIN-5-YL}OXY)-2-FLUOROPHENYL]BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 0JA C27 H19 CL F N5 O3 S FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *253(H2 O) HELIX 1 1 PRO A 812 LEU A 820 5 9 HELIX 2 2 ASP A 823 GLU A 828 1 6 HELIX 3 3 PRO A 830 ASP A 832 5 3 HELIX 4 4 THR A 875 GLY A 893 1 19 HELIX 5 5 LEU A 924 LYS A 931 1 8 HELIX 6 6 THR A 1001 ARG A 1022 1 22 HELIX 7 7 ALA A 1030 ARG A 1032 5 3 HELIX 8 8 GLU A 1038 ASN A 1040 5 3 HELIX 9 9 PHE A 1047 ARG A 1051 5 5 HELIX 10 10 PRO A 1068 MET A 1072 5 5 HELIX 11 11 ALA A 1073 ARG A 1080 1 8 HELIX 12 12 THR A 1083 SER A 1100 1 18 HELIX 13 13 ASP A 1112 GLY A 1122 1 11 HELIX 14 14 THR A 1132 TRP A 1143 1 12 HELIX 15 15 GLU A 1146 ARG A 1150 5 5 HELIX 16 16 THR A 1152 ALA A 1168 1 17 SHEET 1 A 5 LEU A 834 ARG A 842 0 SHEET 2 A 5 GLY A 846 PHE A 854 -1 O VAL A 848 N LEU A 840 SHEET 3 A 5 CYS A 862 LEU A 870 -1 O ARG A 863 N ALA A 853 SHEET 4 A 5 MET A 913 GLU A 917 -1 O VAL A 916 N ALA A 866 SHEET 5 A 5 LEU A 901 CYS A 905 -1 N LEU A 902 O ILE A 915 SHEET 1 B 3 GLY A 922 ASN A 923 0 SHEET 2 B 3 ILE A1034 LEU A1036 -1 O LEU A1036 N GLY A 922 SHEET 3 B 3 VAL A1042 ILE A1044 -1 O LYS A1043 N LEU A1035 SHEET 1 C 2 VAL A1060 LYS A1062 0 SHEET 2 C 2 ALA A1065 LEU A1067 -1 O ALA A1065 N LYS A1062 SITE 1 AC1 24 VAL A 848 ALA A 866 LYS A 868 GLU A 885 SITE 2 AC1 24 LEU A 889 ILE A 892 VAL A 898 VAL A 899 SITE 3 AC1 24 VAL A 914 VAL A 916 GLU A 917 PHE A 918 SITE 4 AC1 24 CYS A 919 LYS A 920 GLY A 922 LEU A1019 SITE 5 AC1 24 LEU A1035 ILE A1044 CYS A1045 ASP A1046 SITE 6 AC1 24 PHE A1047 EDO A2002 HOH A3072 HOH A3221 SITE 1 AC2 6 GLY A 922 ASN A 923 PHE A1047 0JA A2001 SITE 2 AC2 6 HOH A3120 HOH A3136 SITE 1 AC3 7 ALA A1020 GLN A1085 THR A1152 PHE A1153 SITE 2 AC3 7 SER A1154 HOH A3092 HOH A3121 SITE 1 AC4 5 TRP A1096 SER A1100 PRO A1128 ASP A1129 SITE 2 AC4 5 HOH A3009 CRYST1 135.615 56.618 51.819 90.00 94.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007374 0.000000 0.000630 0.00000 SCALE2 0.000000 0.017662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019368 0.00000