HEADER HYDROLASE 18-JAN-12 3VNY TITLE CRYSTAL STRUCTURE OF BETA-GLUCURONIDASE FROM ACIDOBACTERIUM CAPSULATUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDOBACTERIUM CAPSULATUM; SOURCE 3 ORGANISM_TAXID: 240015; SOURCE 4 STRAIN: ATCC 51196; SOURCE 5 GENE: ACP_2665; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS TIM BARREL, GREEK-KEY, GLYCOSIDE HYDROLASE FAMILY 79, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MOMMA,Z.FUJIMOTO,M.MICHIKAWA,H.ICHINOSE,M.YOSHIDA,Y.KOTAKE,P.BIELY, AUTHOR 2 Y.TSUMURAYA,S.KANEKO REVDAT 3 20-MAR-24 3VNY 1 REMARK SEQADV REVDAT 2 19-AUG-15 3VNY 1 JRNL REVDAT 1 22-FEB-12 3VNY 0 JRNL AUTH M.MICHIKAWA,H.ICHINOSE,M.MOMMA,P.BIELY,S.JONGKEES,M.YOSHIDA, JRNL AUTH 2 T.KOTAKE,Y.TSUMURAYA,S.G.WITHERS,Z.FUJIMOTO,S.KANEKO JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF GLYCOSIDE JRNL TITL 2 HYDROLASE FAMILY 79 BETA-GLUCURONIDASE FROM ACIDOBACTERIUM JRNL TITL 3 CAPSULATUM JRNL REF J.BIOL.CHEM. V. 287 14069 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22367201 JRNL DOI 10.1074/JBC.M112.346288 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 85363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3852 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5269 ; 1.066 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;32.544 ;23.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;12.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3056 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2412 ; 0.481 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3856 ; 0.905 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 1.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1393 ; 2.295 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000095282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-10; 29-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 95; 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A; AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.97946, 0.97967, REMARK 200 0.96000 REMARK 200 MONOCHROMATOR : SI111; SI111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270; ADSC QUANTUM REMARK 200 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90146 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.684 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE/POTASSIUM PHOSPHATE DIBASIC (0.5/9.5 [V/V]), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.56300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.94050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.47025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.56300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 163.41075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.41075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.56300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.47025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 50.56300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.94050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 50.56300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.94050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 50.56300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 163.41075 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.47025 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.56300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.47025 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 163.41075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 50.56300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 50.56300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.94050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 50.56300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -50.56300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.94050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 50.56300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -50.56300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.94050 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 101.12600 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 50.56300 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 50.56300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 108.94050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1095 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1096 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 ALA A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 219 -26.33 -157.97 REMARK 500 VAL A 299 -62.03 -130.96 REMARK 500 GLN A 459 85.90 -150.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VNZ RELATED DB: PDB REMARK 900 RELATED ID: 3VO0 RELATED DB: PDB DBREF 3VNY A 1 475 UNP C1F2K5 C1F2K5_ACIC5 1 475 SEQADV 3VNY LYS A 476 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY LEU A 477 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY ALA A 478 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY ALA A 479 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY ALA A 480 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY LEU A 481 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY GLN A 482 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 483 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 484 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 485 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 486 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 487 UNP C1F2K5 EXPRESSION TAG SEQADV 3VNY HIS A 488 UNP C1F2K5 EXPRESSION TAG SEQRES 1 A 488 MET ALA PHE ALA ARG GLY GLY LEU ALA GLN THR ALA SER SEQRES 2 A 488 GLN THR THR SER SER PRO VAL ARG VAL GLY LEU SER VAL SEQRES 3 A 488 ASP ALA SER ALA LEU GLY HIS THR ILE PRO PRO ASP TYR SEQRES 4 A 488 THR GLY LEU SER TYR GLU GLN ALA GLN MET ALA ASN PRO SEQRES 5 A 488 ASN TYR PHE SER GLY ALA ASN THR GLN LEU ALA GLY PHE SEQRES 6 A 488 LEU ARG THR LEU GLY ARG GLN GLY VAL LEU ARG ILE GLY SEQRES 7 A 488 GLY ASN THR SER GLU TYR THR PHE TRP ASN ARG HIS ALA SEQRES 8 A 488 LYS PRO THR ALA ALA ASP GLU HIS LEU ALA ALA GLY PRO SEQRES 9 A 488 ASP LYS GLY HIS HIS ALA ALA ALA ARG GLU VAL ILE THR SEQRES 10 A 488 PRO GLU ALA VAL ASN ASN LEU SER GLU PHE LEU ASP LYS SEQRES 11 A 488 THR GLY TRP LYS LEU ILE TYR GLY LEU ASN LEU GLY LYS SEQRES 12 A 488 GLY THR PRO GLU ASN ALA ALA ASP GLU ALA ALA TYR VAL SEQRES 13 A 488 MET GLU THR ILE GLY ALA ASP ARG LEU LEU ALA PHE GLN SEQRES 14 A 488 LEU GLY ASN GLU PRO ASP LEU PHE TYR ARG ASN GLY ILE SEQRES 15 A 488 ARG PRO ALA SER TYR ASP PHE ALA ALA TYR ALA GLY ASP SEQRES 16 A 488 TRP GLN ARG PHE PHE THR ALA ILE ARG LYS ARG VAL PRO SEQRES 17 A 488 ASN ALA PRO PHE ALA GLY PRO ASP THR ALA TYR ASN THR SEQRES 18 A 488 LYS TRP LEU VAL PRO PHE ALA ASP LYS PHE LYS HIS ASP SEQRES 19 A 488 VAL LYS PHE ILE SER SER HIS TYR TYR ALA GLU GLY PRO SEQRES 20 A 488 PRO THR ASP PRO SER MET THR ILE GLU ARG LEU MET LYS SEQRES 21 A 488 PRO ASN PRO ARG LEU LEU GLY GLU THR ALA GLY LEU LYS SEQRES 22 A 488 GLN VAL GLU ALA ASP THR GLY LEU PRO PHE ARG LEU THR SEQRES 23 A 488 GLU THR ASN SER CYS TYR GLN GLY GLY LYS GLN GLY VAL SEQRES 24 A 488 SER ASP THR PHE ALA ALA ALA LEU TRP ALA GLY ASP LEU SEQRES 25 A 488 MET TYR GLN GLN ALA ALA ALA GLY SER THR GLY ILE ASN SEQRES 26 A 488 PHE HIS GLY GLY GLY TYR GLY TRP TYR THR PRO VAL ALA SEQRES 27 A 488 GLY THR PRO GLU ASP GLY PHE ILE ALA ARG PRO GLU TYR SEQRES 28 A 488 TYR GLY MET LEU LEU PHE ALA GLN ALA GLY ALA GLY GLN SEQRES 29 A 488 LEU LEU GLY ALA LYS LEU THR ASP ASN SER ALA ALA PRO SEQRES 30 A 488 LEU LEU THR ALA TYR ALA LEU ARG GLY THR ASP GLY ARG SEQRES 31 A 488 THR ARG ILE ALA LEU PHE ASN LYS ASN LEU ASP ALA ASP SEQRES 32 A 488 VAL GLU VAL ALA ILE SER GLY VAL ALA SER PRO SER GLY SEQRES 33 A 488 THR VAL LEU ARG LEU GLU ALA PRO ARG ALA ASP ASP THR SEQRES 34 A 488 THR ASP VAL THR PHE GLY GLY ALA PRO VAL GLY ALA SER SEQRES 35 A 488 GLY SER TRP SER PRO LEU VAL GLN GLU TYR VAL PRO GLY SEQRES 36 A 488 HIS SER GLY GLN PHE VAL LEU HIS MET ARG LYS ALA SER SEQRES 37 A 488 GLY ALA LEU LEU GLU PHE ALA LYS LEU ALA ALA ALA LEU SEQRES 38 A 488 GLN HIS HIS HIS HIS HIS HIS HET PO4 A 501 5 HET GOL A 502 6 HET GOL A 503 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *503(H2 O) HELIX 1 1 ALA A 47 ASN A 51 5 5 HELIX 2 2 ASN A 59 GLY A 70 1 12 HELIX 3 3 GLY A 79 GLU A 83 5 5 HELIX 4 4 LYS A 92 ALA A 96 5 5 HELIX 5 5 THR A 117 GLY A 132 1 16 HELIX 6 6 THR A 145 GLY A 161 1 17 HELIX 7 7 GLU A 173 ASP A 175 5 3 HELIX 8 8 LEU A 176 GLY A 181 1 6 HELIX 9 9 ASP A 188 VAL A 207 1 20 HELIX 10 10 ASN A 220 LYS A 222 5 3 HELIX 11 11 TRP A 223 PHE A 231 1 9 HELIX 12 12 LYS A 232 VAL A 235 5 4 HELIX 13 13 THR A 254 MET A 259 1 6 HELIX 14 14 ASN A 262 GLY A 280 1 19 HELIX 15 15 PHE A 303 GLY A 320 1 18 HELIX 16 16 ARG A 348 GLY A 361 1 14 HELIX 17 17 GLY A 440 SER A 444 5 5 SHEET 1 A 3 THR A 433 PHE A 434 0 SHEET 2 A 3 SER A 415 GLU A 422 -1 N GLU A 422 O THR A 433 SHEET 3 A 3 GLU A 451 PRO A 454 -1 O VAL A 453 N GLY A 416 SHEET 1 B 9 THR A 433 PHE A 434 0 SHEET 2 B 9 SER A 415 GLU A 422 -1 N GLU A 422 O THR A 433 SHEET 3 B 9 SER A 468 PHE A 474 -1 O GLY A 469 N LEU A 421 SHEET 4 B 9 THR A 391 ASN A 397 -1 N ILE A 393 O LEU A 472 SHEET 5 B 9 LEU A 379 GLY A 386 -1 N TYR A 382 O ALA A 394 SHEET 6 B 9 GLY A 363 THR A 371 -1 N GLN A 364 O ARG A 385 SHEET 7 B 9 VAL A 20 ILE A 35 -1 N ILE A 35 O GLY A 363 SHEET 8 B 9 VAL A 404 SER A 409 1 O ALA A 407 N LEU A 24 SHEET 9 B 9 PHE A 460 MET A 464 -1 O LEU A 462 N VAL A 406 SHEET 1 C 9 GLY A 41 GLU A 45 0 SHEET 2 C 9 VAL A 74 GLY A 78 1 O ARG A 76 N LEU A 42 SHEET 3 C 9 LYS A 134 LEU A 139 1 O LYS A 134 N LEU A 75 SHEET 4 C 9 LEU A 165 LEU A 170 1 O GLN A 169 N LEU A 139 SHEET 5 C 9 PHE A 212 THR A 217 1 O ALA A 213 N PHE A 168 SHEET 6 C 9 PHE A 237 GLU A 245 1 O HIS A 241 N THR A 217 SHEET 7 C 9 PHE A 283 CYS A 291 1 O ARG A 284 N ILE A 238 SHEET 8 C 9 ILE A 324 HIS A 327 1 O HIS A 327 N THR A 288 SHEET 9 C 9 GLY A 41 GLU A 45 1 N SER A 43 O PHE A 326 SHEET 1 D 2 THR A 85 TRP A 87 0 SHEET 2 D 2 GLU A 114 ILE A 116 1 O GLU A 114 N PHE A 86 SHEET 1 E 2 VAL A 337 THR A 340 0 SHEET 2 E 2 GLY A 344 ALA A 347 -1 O ILE A 346 N ALA A 338 CISPEP 1 GLY A 214 PRO A 215 0 4.16 CISPEP 2 GLY A 246 PRO A 247 0 0.01 SITE 1 AC1 7 GLY A 103 GLY A 330 TYR A 331 GLY A 332 SITE 2 AC1 7 GOL A 503 HOH A 784 HOH A 960 SITE 1 AC2 10 GLU A 45 GLY A 79 ASN A 80 ASP A 105 SITE 2 AC2 10 ASN A 172 GLU A 173 GLU A 287 HIS A 327 SITE 3 AC2 10 TYR A 334 HOH A 961 SITE 1 AC3 7 TYR A 331 TRP A 333 ARG A 348 ARG A 425 SITE 2 AC3 7 PO4 A 501 HOH A 640 HOH A 858 CRYST1 101.126 101.126 217.881 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004590 0.00000