HEADER TRANSCRIPTION/DNA 27-JAN-12 3VOK TITLE X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM WITH THE TITLE 2 TARGET DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3'; COMPND 7 CHAIN: U; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 STRAIN: IL1403; SOURCE 5 GENE: L53789, LL0661, YGFC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS HEME, SENSOR PROTEIN, TETR SUPERFAMILY, DNA-BINDING COMPLEX, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.SAWAI,H.SUGIMOTO,Y.SHIRO,S.AONO REVDAT 4 08-NOV-23 3VOK 1 SEQADV REVDAT 3 22-NOV-17 3VOK 1 REMARK REVDAT 2 12-SEP-12 3VOK 1 JRNL REVDAT 1 25-JUL-12 3VOK 0 JRNL AUTH H.SAWAI,M.YAMANAKA,H.SUGIMOTO,Y.SHIRO,S.AONO JRNL TITL STRUCTURAL BASIS FOR THE TRANSCRIPTIONAL REGULATION OF HEME JRNL TITL 2 HOMEOSTASIS IN LACTOCOCCUS LACTIS. JRNL REF J.BIOL.CHEM. V. 287 30755 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22798069 JRNL DOI 10.1074/JBC.M112.370916 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 20763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8719 - 3.9929 0.98 2686 131 0.1915 0.2008 REMARK 3 2 3.9929 - 3.1716 0.99 2556 132 0.1897 0.2208 REMARK 3 3 3.1716 - 2.7714 0.99 2481 159 0.2216 0.2895 REMARK 3 4 2.7714 - 2.5183 0.98 2464 123 0.2335 0.2837 REMARK 3 5 2.5183 - 2.3380 0.98 2440 131 0.2218 0.2811 REMARK 3 6 2.3380 - 2.2002 0.96 2398 138 0.2007 0.2584 REMARK 3 7 2.2002 - 2.0901 0.95 2333 134 0.1951 0.2282 REMARK 3 8 2.0901 - 1.9992 0.94 2335 122 0.1889 0.2214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47370 REMARK 3 B22 (A**2) : 2.47370 REMARK 3 B33 (A**2) : -4.94740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1925 REMARK 3 ANGLE : 1.106 2671 REMARK 3 CHIRALITY : 0.071 286 REMARK 3 PLANARITY : 0.005 280 REMARK 3 DIHEDRAL : 20.349 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:27) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3766 47.9828 4.1551 REMARK 3 T TENSOR REMARK 3 T11: 0.4642 T22: 0.3592 REMARK 3 T33: 0.3223 T12: -0.1201 REMARK 3 T13: -0.1024 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.3224 L22: 0.7563 REMARK 3 L33: 0.2315 L12: 0.3115 REMARK 3 L13: -0.0449 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: -0.1612 S13: 0.0018 REMARK 3 S21: 0.1116 S22: 0.0090 S23: 0.0668 REMARK 3 S31: 0.0462 S32: 0.0992 S33: -0.0424 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 28:34) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6805 49.5298 -11.0317 REMARK 3 T TENSOR REMARK 3 T11: 0.5527 T22: 0.3319 REMARK 3 T33: 0.3692 T12: -0.1488 REMARK 3 T13: -0.1564 T23: 0.0909 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.1181 REMARK 3 L33: 0.0032 L12: 0.0096 REMARK 3 L13: 0.0009 L23: 0.0117 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.0321 S13: 0.0228 REMARK 3 S21: -0.0536 S22: 0.0178 S23: 0.0316 REMARK 3 S31: -0.0371 S32: -0.0131 S33: 0.0185 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 35:70) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5561 48.0849 -3.0229 REMARK 3 T TENSOR REMARK 3 T11: 0.4302 T22: 0.2703 REMARK 3 T33: 0.3491 T12: -0.1477 REMARK 3 T13: -0.1234 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.1450 L22: 0.0658 REMARK 3 L33: 0.0816 L12: 0.0460 REMARK 3 L13: 0.0318 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0323 S13: 0.0381 REMARK 3 S21: -0.0629 S22: 0.0362 S23: -0.0429 REMARK 3 S31: 0.0044 S32: 0.0869 S33: 0.0113 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 71:99) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8376 22.7628 -1.8844 REMARK 3 T TENSOR REMARK 3 T11: 0.2846 T22: 0.1955 REMARK 3 T33: 0.2246 T12: 0.0095 REMARK 3 T13: -0.0017 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.5827 L22: 0.1904 REMARK 3 L33: 0.3966 L12: 0.2273 REMARK 3 L13: -0.0022 L23: -0.1939 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.1725 S13: -0.1393 REMARK 3 S21: 0.2587 S22: -0.0400 S23: 0.0005 REMARK 3 S31: -0.0909 S32: -0.0357 S33: -0.0208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 100:113) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1492 40.3027 -4.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.4147 T22: 0.2440 REMARK 3 T33: 0.3289 T12: -0.0937 REMARK 3 T13: -0.0657 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.1145 L22: 0.1131 REMARK 3 L33: 0.0901 L12: 0.0821 REMARK 3 L13: 0.0388 L23: 0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.0215 S13: 0.0367 REMARK 3 S21: 0.1172 S22: -0.0566 S23: 0.0115 REMARK 3 S31: -0.0527 S32: -0.0155 S33: 0.0368 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 114:138) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6581 34.2016 -14.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.5333 REMARK 3 T33: 0.3139 T12: -0.0766 REMARK 3 T13: -0.0876 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0473 L22: 0.0818 REMARK 3 L33: 0.2134 L12: -0.0101 REMARK 3 L13: 0.0874 L23: 0.0341 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: 0.0942 S13: -0.0392 REMARK 3 S21: -0.0676 S22: 0.0615 S23: -0.0104 REMARK 3 S31: -0.1934 S32: 0.0725 S33: 0.0109 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 139:157) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5494 29.3675 -13.4047 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.1817 REMARK 3 T33: 0.2136 T12: 0.0105 REMARK 3 T13: -0.0254 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.4992 L22: 0.0499 REMARK 3 L33: 0.5440 L12: 0.1599 REMARK 3 L13: 0.0741 L23: 0.0377 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0391 S13: -0.0294 REMARK 3 S21: -0.0429 S22: -0.0112 S23: -0.0748 REMARK 3 S31: -0.1183 S32: 0.1451 S33: 0.0256 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 158:178) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4954 28.4442 -9.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.2236 REMARK 3 T33: 0.2633 T12: 0.0607 REMARK 3 T13: -0.0038 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.3351 L22: 0.1143 REMARK 3 L33: 0.1511 L12: -0.1662 REMARK 3 L13: -0.0311 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.0319 S13: -0.0168 REMARK 3 S21: 0.0386 S22: 0.0313 S23: 0.1028 REMARK 3 S31: -0.0907 S32: -0.1414 S33: 0.0255 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 179:189) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2336 13.9852 -22.5451 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1901 REMARK 3 T33: 0.2607 T12: 0.0163 REMARK 3 T13: -0.0505 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0616 L22: 0.0139 REMARK 3 L33: 0.0841 L12: -0.0040 REMARK 3 L13: 0.0033 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.0390 S13: 0.1038 REMARK 3 S21: 0.0163 S22: -0.0035 S23: -0.0494 REMARK 3 S31: -0.0081 S32: -0.0178 S33: 0.0224 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN U REMARK 3 ORIGIN FOR THE GROUP (A): 36.7486 64.6365 -18.1634 REMARK 3 T TENSOR REMARK 3 T11: 0.6523 T22: 0.4340 REMARK 3 T33: 0.1782 T12: -0.1720 REMARK 3 T13: -0.6310 T23: 0.2025 REMARK 3 L TENSOR REMARK 3 L11: 0.0490 L22: 0.1410 REMARK 3 L33: 0.2277 L12: -0.0791 REMARK 3 L13: 0.0102 L23: -0.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.1689 S12: -0.0061 S13: 0.0238 REMARK 3 S21: -0.0113 S22: 0.2342 S23: -0.0262 REMARK 3 S31: -0.0295 S32: 0.0808 S33: 0.3937 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000095304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 41.5840 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : 0.51300 REMARK 200 FOR SHELL : 6.622 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 1QPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM CITRATE, 0.1M PIPES, PH REMARK 280 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.46333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.23167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.34750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.11583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.57917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.46333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 36.23167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 18.11583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.34750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.57917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.23167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 125 REMARK 465 GLN A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 THR A 130 REMARK 465 VAL A 131 REMARK 465 PRO A 132 REMARK 465 ALA A 133 REMARK 465 SER A 134 REMARK 465 GLU A 135 REMARK 465 ASN A 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG U 3 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG U 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA U 6 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG U 9 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG U 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN U HAS MICROHETEROGENEITY AT POSITION 8(DT/DA) DBREF 3VOK A 1 189 UNP Q9CHR1 Q9CHR1_LACLA 1 189 DBREF 3VOK U 1 15 PDB 3VOK 3VOK 1 15 SEQADV 3VOK DA U 8 PDB 3VOK DT 8 MICROHETEROGENEITY SEQRES 1 A 189 MET PRO LYS SER THR TYR PHE SER LEU SER ASP GLU LYS SEQRES 2 A 189 ARG ASN ARG VAL TYR ASP ALA CYS LEU ASN GLU PHE GLN SEQRES 3 A 189 THR HIS SER PHE HIS GLU ALA LYS ILE MET HIS ILE VAL SEQRES 4 A 189 LYS ALA LEU ASP ILE PRO ARG GLY SER PHE TYR GLN TYR SEQRES 5 A 189 PHE GLU ASP LEU LYS ASP ALA TYR PHE TYR VAL LEU SER SEQRES 6 A 189 GLN GLU THR LEU GLU ILE HIS ASP LEU PHE PHE ASN LEU SEQRES 7 A 189 LEU LYS ASP ASN SER ILE GLU GLU SER LEU ASP LYS TYR SEQRES 8 A 189 LYS TYR LEU LEU LEU GLU ASN LEU ILE ASP SER PRO GLN SEQRES 9 A 189 TYR LYS LEU TYR LYS TYR ARG PHE LEU ASP TRP THR TYR SEQRES 10 A 189 GLU LEU GLU ARG ASP TRP LYS PRO GLN SER SER ALA THR SEQRES 11 A 189 VAL PRO ALA SER GLU ASN ASP ASN PRO ILE SER GLN VAL SEQRES 12 A 189 LEU LYS SER VAL VAL HIS ASN LEU VAL TYR ARG LEU PHE SEQRES 13 A 189 SER GLU ASN TRP THR GLU LYS THR PHE ILE GLU ASN TYR SEQRES 14 A 189 ASP LYS GLU ILE LYS LEU VAL THR GLU GLY LEU LEU ASN SEQRES 15 A 189 TYR ILE THR ASP ARG LYS ASN SEQRES 1 U 15 DA DT DG DA DC DA DC DT DG DT DG DT DC SEQRES 2 U 15 DA DT FORMUL 3 HOH *81(H2 O) HELIX 1 1 LYS A 3 SER A 8 1 6 HELIX 2 2 ASP A 11 HIS A 28 1 18 HELIX 3 3 LYS A 34 LEU A 42 1 9 HELIX 4 4 PRO A 45 TYR A 52 1 8 HELIX 5 5 ASP A 55 THR A 68 1 14 HELIX 6 6 ILE A 71 LEU A 79 1 9 HELIX 7 7 SER A 83 ILE A 100 1 18 HELIX 8 8 GLN A 104 ASP A 114 1 11 HELIX 9 9 THR A 116 TRP A 123 1 8 HELIX 10 10 ASN A 138 GLU A 158 1 21 HELIX 11 11 THR A 161 GLU A 178 1 18 HELIX 12 12 LEU A 181 ILE A 184 1 4 CRYST1 97.870 97.870 108.695 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010218 0.005899 0.000000 0.00000 SCALE2 0.000000 0.011798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009200 0.00000