HEADER MEMBRANE PROTEIN 31-JAN-12 3VOQ TITLE CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN SIN1, A TITLE 2 TORC2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL PH DOMAIN, UNP RESIDUES 372-493; COMPND 5 SYNONYM: TORC2 SUBUNIT MAPKAP1, MITOGEN-ACTIVATED PROTEIN KINASE 2- COMPND 6 ASSOCIATED PROTEIN 1, STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN COMPND 7 1, SAPK-INTERACTING PROTEIN 1, MSIN1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A-TEV KEYWDS PH DOMAIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.PAN,Y.MATSUURA REVDAT 3 08-NOV-23 3VOQ 1 SEQADV REVDAT 2 14-AUG-13 3VOQ 1 JRNL REVDAT 1 11-APR-12 3VOQ 0 JRNL AUTH D.PAN,Y.MATSUURA JRNL TITL STRUCTURES OF THE PLECKSTRIN HOMOLOGY DOMAIN OF JRNL TITL 2 SACCHAROMYCES CEREVISIAE AVO1 AND ITS HUMAN ORTHOLOGUE SIN1, JRNL TITL 3 AN ESSENTIAL SUBUNIT OF TOR COMPLEX 2 JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 386 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22505404 JRNL DOI 10.1107/S1744309112007178 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1805 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1840 ; 0.027 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2488 ; 2.461 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 6.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;40.354 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;17.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.928 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1347 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3VOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000095310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ULB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 1.26M AMMONIUM SULFATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.79950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.64650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.69925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.64650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.89975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.64650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.69925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.64650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.89975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.79950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 415 REMARK 465 ASN A 416 REMARK 465 GLN A 417 REMARK 465 LYS A 418 REMARK 465 ALA A 419 REMARK 465 SER A 420 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ALA A 493 REMARK 465 THR B 415 REMARK 465 ASN B 416 REMARK 465 GLN B 417 REMARK 465 LYS B 418 REMARK 465 ALA B 419 REMARK 465 SER B 420 REMARK 465 THR B 421 REMARK 465 LYS B 422 REMARK 465 PHE B 423 REMARK 465 TRP B 424 REMARK 465 THR B 492 REMARK 465 ALA B 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 LYS B 428 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 382 CG HIS A 382 CD2 0.074 REMARK 500 ASP A 433 CB ASP A 433 CG 0.135 REMARK 500 GLU A 487 CD GLU A 487 OE2 0.071 REMARK 500 SER B 379 CB SER B 379 OG -0.132 REMARK 500 HIS B 381 CG HIS B 381 CD2 0.079 REMARK 500 HIS B 461 CG HIS B 461 CD2 0.077 REMARK 500 HIS B 465 CG HIS B 465 CD2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 395 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 433 CB - CG - OD1 ANGL. DEV. = 11.3 DEGREES REMARK 500 LEU A 458 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 395 -51.44 -128.19 REMARK 500 HIS A 461 5.70 81.86 REMARK 500 SER A 470 -168.97 -163.09 REMARK 500 SER B 470 -168.53 -166.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ULB RELATED DB: PDB REMARK 900 STRUCTURE OF A YEAST HOMOLOGUE IN AN ORTHORHOMBIC CRYSTAL FORM REMARK 900 RELATED ID: 3ULC RELATED DB: PDB REMARK 900 STRUCTURE OF A YEAST HOMOLOGUE IN A TRIGONAL CRYSTAL FORM DBREF 3VOQ A 372 493 UNP Q9BPZ7 SIN1_HUMAN 372 493 DBREF 3VOQ B 372 493 UNP Q9BPZ7 SIN1_HUMAN 372 493 SEQADV 3VOQ GLY A 369 UNP Q9BPZ7 EXPRESSION TAG SEQADV 3VOQ ALA A 370 UNP Q9BPZ7 EXPRESSION TAG SEQADV 3VOQ MET A 371 UNP Q9BPZ7 EXPRESSION TAG SEQADV 3VOQ GLY B 369 UNP Q9BPZ7 EXPRESSION TAG SEQADV 3VOQ ALA B 370 UNP Q9BPZ7 EXPRESSION TAG SEQADV 3VOQ MET B 371 UNP Q9BPZ7 EXPRESSION TAG SEQRES 1 A 125 GLY ALA MET ALA THR VAL GLN ASP MET LEU SER SER HIS SEQRES 2 A 125 HIS TYR LYS SER PHE LYS VAL SER MET ILE HIS ARG LEU SEQRES 3 A 125 ARG PHE THR THR ASP VAL GLN LEU GLY ILE SER GLY ASP SEQRES 4 A 125 LYS VAL GLU ILE ASP PRO VAL THR ASN GLN LYS ALA SER SEQRES 5 A 125 THR LYS PHE TRP ILE LYS GLN LYS PRO ILE SER ILE ASP SEQRES 6 A 125 SER ASP LEU LEU CYS ALA CYS ASP LEU ALA GLU GLU LYS SEQRES 7 A 125 SER PRO SER HIS ALA ILE PHE LYS LEU THR TYR LEU SER SEQRES 8 A 125 ASN HIS ASP TYR LYS HIS LEU TYR PHE GLU SER ASP ALA SEQRES 9 A 125 ALA THR VAL ASN GLU ILE VAL LEU LYS VAL ASN TYR ILE SEQRES 10 A 125 LEU GLU SER ARG ALA SER THR ALA SEQRES 1 B 125 GLY ALA MET ALA THR VAL GLN ASP MET LEU SER SER HIS SEQRES 2 B 125 HIS TYR LYS SER PHE LYS VAL SER MET ILE HIS ARG LEU SEQRES 3 B 125 ARG PHE THR THR ASP VAL GLN LEU GLY ILE SER GLY ASP SEQRES 4 B 125 LYS VAL GLU ILE ASP PRO VAL THR ASN GLN LYS ALA SER SEQRES 5 B 125 THR LYS PHE TRP ILE LYS GLN LYS PRO ILE SER ILE ASP SEQRES 6 B 125 SER ASP LEU LEU CYS ALA CYS ASP LEU ALA GLU GLU LYS SEQRES 7 B 125 SER PRO SER HIS ALA ILE PHE LYS LEU THR TYR LEU SER SEQRES 8 B 125 ASN HIS ASP TYR LYS HIS LEU TYR PHE GLU SER ASP ALA SEQRES 9 B 125 ALA THR VAL ASN GLU ILE VAL LEU LYS VAL ASN TYR ILE SEQRES 10 B 125 LEU GLU SER ARG ALA SER THR ALA FORMUL 3 HOH *125(H2 O) HELIX 1 1 GLY A 369 SER A 379 1 11 HELIX 2 2 ASP A 471 SER A 488 1 18 HELIX 3 3 ALA B 370 HIS B 382 1 13 HELIX 4 4 ASP B 471 SER B 488 1 18 SHEET 1 A 7 ILE A 430 ASP A 433 0 SHEET 2 A 7 LYS A 408 PRO A 413 -1 N VAL A 409 O ILE A 432 SHEET 3 A 7 PHE A 396 ILE A 404 -1 N GLN A 401 O ASP A 412 SHEET 4 A 7 LYS A 384 HIS A 392 -1 N HIS A 392 O PHE A 396 SHEET 5 A 7 ASP A 462 SER A 470 -1 O GLU A 469 N SER A 389 SHEET 6 A 7 ALA A 451 SER A 459 -1 N TYR A 457 O LYS A 464 SHEET 7 A 7 LEU A 437 GLU A 445 -1 N ALA A 443 O ILE A 452 SHEET 1 B 7 ILE B 430 ASP B 433 0 SHEET 2 B 7 LYS B 408 PRO B 413 -1 N VAL B 409 O ILE B 432 SHEET 3 B 7 PHE B 396 ILE B 404 -1 N GLN B 401 O ASP B 412 SHEET 4 B 7 LYS B 384 ARG B 393 -1 N ARG B 393 O PHE B 396 SHEET 5 B 7 ASP B 462 SER B 470 -1 O GLU B 469 N SER B 389 SHEET 6 B 7 HIS B 450 SER B 459 -1 N LEU B 455 O LEU B 466 SHEET 7 B 7 LEU B 437 SER B 447 -1 N ALA B 443 O ILE B 452 CRYST1 79.293 79.293 123.599 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008091 0.00000