data_3VP9 # _entry.id 3VP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VP9 pdb_00003vp9 10.2210/pdb3vp9/pdb RCSB RCSB095329 ? ? WWPDB D_1000095329 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VP9 _pdbx_database_status.recvd_initial_deposition_date 2012-02-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VP8 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsumura, H.' 1 'Kusaka, N.' 2 'Nakamura, T.' 3 'Tanaka, N.' 4 'Sagegami, K.' 5 'Uegaki, K.' 6 'Inoue, T.' 7 'Mukai, Y.' 8 # _citation.id primary _citation.title 'Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 26528 _citation.page_last 26538 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22707714 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.369652 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsumura, H.' 1 ? primary 'Kusaka, N.' 2 ? primary 'Nakamura, T.' 3 ? primary 'Tanaka, N.' 4 ? primary 'Sagegami, K.' 5 ? primary 'Uegaki, K.' 6 ? primary 'Inoue, T.' 7 ? primary 'Mukai, Y.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'General transcriptional corepressor TUP1' 11086.417 2 ? L62R 'N-terminal domain' ? 2 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 4 ? ? ? ? 3 water nat water 18.015 174 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Flocculation suppressor protein, Glucose repression regulatory protein TUP1, Repressor AER2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1,4-DIETHYLENE DIOXIDE' DIO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 SER n 1 5 VAL n 1 6 SER n 1 7 ASN n 1 8 THR n 1 9 GLN n 1 10 ASN n 1 11 LYS n 1 12 LEU n 1 13 ASN n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 ASP n 1 18 ALA n 1 19 ILE n 1 20 ARG n 1 21 GLN n 1 22 GLU n 1 23 PHE n 1 24 LEU n 1 25 GLN n 1 26 VAL n 1 27 SER n 1 28 GLN n 1 29 GLU n 1 30 ALA n 1 31 ASN n 1 32 THR n 1 33 TYR n 1 34 ARG n 1 35 LEU n 1 36 GLN n 1 37 ASN n 1 38 GLN n 1 39 LYS n 1 40 ASP n 1 41 TYR n 1 42 ASP n 1 43 PHE n 1 44 LYS n 1 45 MET n 1 46 ASN n 1 47 GLN n 1 48 GLN n 1 49 LEU n 1 50 ALA n 1 51 GLU n 1 52 MET n 1 53 GLN n 1 54 GLN n 1 55 ILE n 1 56 ARG n 1 57 ASN n 1 58 THR n 1 59 VAL n 1 60 TYR n 1 61 GLU n 1 62 ARG n 1 63 GLU n 1 64 LEU n 1 65 THR n 1 66 HIS n 1 67 ARG n 1 68 LYS n 1 69 MET n 1 70 LYS n 1 71 ASP n 1 72 ALA n 1 73 TYR n 1 74 GLU n 1 75 GLU n 1 76 GLU n 1 77 ILE n 1 78 LYS n 1 79 HIS n 1 80 LEU n 1 81 LYS n 1 82 LEU n 1 83 GLY n 1 84 LEU n 1 85 GLU n 1 86 GLN n 1 87 ARG n 1 88 ASP n 1 89 HIS n 1 90 GLN n 1 91 ILE n 1 92 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TUP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain S288c _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 SER 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 THR 8 8 ? ? ? A . n A 1 9 GLN 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 LYS 11 11 ? ? ? A . n A 1 12 LEU 12 12 ? ? ? A . n A 1 13 ASN 13 13 ? ? ? A . n A 1 14 GLU 14 14 ? ? ? A . n A 1 15 LEU 15 15 ? ? ? A . n A 1 16 LEU 16 16 ? ? ? A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 ARG 87 87 ? ? ? A . n A 1 88 ASP 88 88 ? ? ? A . n A 1 89 HIS 89 89 ? ? ? A . n A 1 90 GLN 90 90 ? ? ? A . n A 1 91 ILE 91 91 ? ? ? A . n A 1 92 ALA 92 92 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 THR 2 2 ? ? ? B . n B 1 3 ALA 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 VAL 5 5 ? ? ? B . n B 1 6 SER 6 6 ? ? ? B . n B 1 7 ASN 7 7 ? ? ? B . n B 1 8 THR 8 8 ? ? ? B . n B 1 9 GLN 9 9 ? ? ? B . n B 1 10 ASN 10 10 ? ? ? B . n B 1 11 LYS 11 11 ? ? ? B . n B 1 12 LEU 12 12 ? ? ? B . n B 1 13 ASN 13 13 ? ? ? B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 TYR 33 33 33 TYR TYR B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 GLN 38 38 38 GLN GLN B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 TYR 41 41 41 TYR TYR B . n B 1 42 ASP 42 42 42 ASP ASP B . n B 1 43 PHE 43 43 43 PHE PHE B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 MET 45 45 45 MET MET B . n B 1 46 ASN 46 46 46 ASN ASN B . n B 1 47 GLN 47 47 47 GLN GLN B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 MET 52 52 52 MET MET B . n B 1 53 GLN 53 53 53 GLN GLN B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 ARG 62 62 62 ARG ARG B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 THR 65 65 65 THR THR B . n B 1 66 HIS 66 66 66 HIS HIS B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 MET 69 69 69 MET MET B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 ALA 72 72 72 ALA ALA B . n B 1 73 TYR 73 73 73 TYR TYR B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ILE 77 77 77 ILE ILE B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 HIS 79 79 79 HIS HIS B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 LEU 82 82 82 LEU LEU B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 GLN 86 86 86 GLN GLN B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASP 88 88 88 ASP ASP B . n B 1 89 HIS 89 89 89 HIS HIS B . n B 1 90 GLN 90 90 90 GLN GLN B . n B 1 91 ILE 91 91 ? ? ? B . n B 1 92 ALA 92 92 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DIO 1 101 1 DIO DIO A . D 2 DIO 1 101 2 DIO DIO B . E 2 DIO 1 102 3 DIO DIO B . F 2 DIO 1 103 4 DIO DIO B . G 3 HOH 1 201 2 HOH HOH A . G 3 HOH 2 202 4 HOH HOH A . G 3 HOH 3 203 5 HOH HOH A . G 3 HOH 4 204 6 HOH HOH A . G 3 HOH 5 205 7 HOH HOH A . G 3 HOH 6 206 13 HOH HOH A . G 3 HOH 7 207 17 HOH HOH A . G 3 HOH 8 208 18 HOH HOH A . G 3 HOH 9 209 19 HOH HOH A . G 3 HOH 10 210 25 HOH HOH A . G 3 HOH 11 211 26 HOH HOH A . G 3 HOH 12 212 27 HOH HOH A . G 3 HOH 13 213 29 HOH HOH A . G 3 HOH 14 214 31 HOH HOH A . G 3 HOH 15 215 32 HOH HOH A . G 3 HOH 16 216 34 HOH HOH A . G 3 HOH 17 217 35 HOH HOH A . G 3 HOH 18 218 36 HOH HOH A . G 3 HOH 19 219 39 HOH HOH A . G 3 HOH 20 220 42 HOH HOH A . G 3 HOH 21 221 44 HOH HOH A . G 3 HOH 22 222 48 HOH HOH A . G 3 HOH 23 223 50 HOH HOH A . G 3 HOH 24 224 53 HOH HOH A . G 3 HOH 25 225 54 HOH HOH A . G 3 HOH 26 226 60 HOH HOH A . G 3 HOH 27 227 61 HOH HOH A . G 3 HOH 28 228 62 HOH HOH A . G 3 HOH 29 229 64 HOH HOH A . G 3 HOH 30 230 66 HOH HOH A . G 3 HOH 31 231 69 HOH HOH A . G 3 HOH 32 232 72 HOH HOH A . G 3 HOH 33 233 76 HOH HOH A . G 3 HOH 34 234 77 HOH HOH A . G 3 HOH 35 235 78 HOH HOH A . G 3 HOH 36 236 82 HOH HOH A . G 3 HOH 37 237 84 HOH HOH A . G 3 HOH 38 238 89 HOH HOH A . G 3 HOH 39 239 91 HOH HOH A . G 3 HOH 40 240 92 HOH HOH A . G 3 HOH 41 241 93 HOH HOH A . G 3 HOH 42 242 95 HOH HOH A . G 3 HOH 43 243 96 HOH HOH A . G 3 HOH 44 244 97 HOH HOH A . G 3 HOH 45 245 101 HOH HOH A . G 3 HOH 46 246 102 HOH HOH A . G 3 HOH 47 247 104 HOH HOH A . G 3 HOH 48 248 114 HOH HOH A . G 3 HOH 49 249 115 HOH HOH A . G 3 HOH 50 250 118 HOH HOH A . G 3 HOH 51 251 120 HOH HOH A . G 3 HOH 52 252 121 HOH HOH A . G 3 HOH 53 253 122 HOH HOH A . G 3 HOH 54 254 123 HOH HOH A . G 3 HOH 55 255 129 HOH HOH A . G 3 HOH 56 256 130 HOH HOH A . G 3 HOH 57 257 131 HOH HOH A . G 3 HOH 58 258 132 HOH HOH A . G 3 HOH 59 259 133 HOH HOH A . G 3 HOH 60 260 136 HOH HOH A . G 3 HOH 61 261 139 HOH HOH A . G 3 HOH 62 262 143 HOH HOH A . G 3 HOH 63 263 144 HOH HOH A . G 3 HOH 64 264 146 HOH HOH A . G 3 HOH 65 265 149 HOH HOH A . G 3 HOH 66 266 150 HOH HOH A . G 3 HOH 67 267 151 HOH HOH A . G 3 HOH 68 268 154 HOH HOH A . G 3 HOH 69 269 155 HOH HOH A . G 3 HOH 70 270 156 HOH HOH A . G 3 HOH 71 271 157 HOH HOH A . G 3 HOH 72 272 158 HOH HOH A . G 3 HOH 73 273 159 HOH HOH A . G 3 HOH 74 274 160 HOH HOH A . G 3 HOH 75 275 161 HOH HOH A . G 3 HOH 76 276 164 HOH HOH A . G 3 HOH 77 277 169 HOH HOH A . H 3 HOH 1 201 1 HOH HOH B . H 3 HOH 2 202 3 HOH HOH B . H 3 HOH 3 203 8 HOH HOH B . H 3 HOH 4 204 9 HOH HOH B . H 3 HOH 5 205 10 HOH HOH B . H 3 HOH 6 206 11 HOH HOH B . H 3 HOH 7 207 12 HOH HOH B . H 3 HOH 8 208 14 HOH HOH B . H 3 HOH 9 209 15 HOH HOH B . H 3 HOH 10 210 16 HOH HOH B . H 3 HOH 11 211 20 HOH HOH B . H 3 HOH 12 212 21 HOH HOH B . H 3 HOH 13 213 22 HOH HOH B . H 3 HOH 14 214 23 HOH HOH B . H 3 HOH 15 215 24 HOH HOH B . H 3 HOH 16 216 28 HOH HOH B . H 3 HOH 17 217 30 HOH HOH B . H 3 HOH 18 218 33 HOH HOH B . H 3 HOH 19 219 37 HOH HOH B . H 3 HOH 20 220 38 HOH HOH B . H 3 HOH 21 221 40 HOH HOH B . H 3 HOH 22 222 41 HOH HOH B . H 3 HOH 23 223 43 HOH HOH B . H 3 HOH 24 224 45 HOH HOH B . H 3 HOH 25 225 46 HOH HOH B . H 3 HOH 26 226 47 HOH HOH B . H 3 HOH 27 227 49 HOH HOH B . H 3 HOH 28 228 51 HOH HOH B . H 3 HOH 29 229 52 HOH HOH B . H 3 HOH 30 230 55 HOH HOH B . H 3 HOH 31 231 56 HOH HOH B . H 3 HOH 32 232 57 HOH HOH B . H 3 HOH 33 233 58 HOH HOH B . H 3 HOH 34 234 59 HOH HOH B . H 3 HOH 35 235 63 HOH HOH B . H 3 HOH 36 236 65 HOH HOH B . H 3 HOH 37 237 67 HOH HOH B . H 3 HOH 38 238 68 HOH HOH B . H 3 HOH 39 239 70 HOH HOH B . H 3 HOH 40 240 71 HOH HOH B . H 3 HOH 41 241 73 HOH HOH B . H 3 HOH 42 242 74 HOH HOH B . H 3 HOH 43 243 75 HOH HOH B . H 3 HOH 44 244 79 HOH HOH B . H 3 HOH 45 245 80 HOH HOH B . H 3 HOH 46 246 81 HOH HOH B . H 3 HOH 47 247 83 HOH HOH B . H 3 HOH 48 248 85 HOH HOH B . H 3 HOH 49 249 86 HOH HOH B . H 3 HOH 50 250 87 HOH HOH B . H 3 HOH 51 251 88 HOH HOH B . H 3 HOH 52 252 90 HOH HOH B . H 3 HOH 53 253 94 HOH HOH B . H 3 HOH 54 254 98 HOH HOH B . H 3 HOH 55 255 99 HOH HOH B . H 3 HOH 56 256 100 HOH HOH B . H 3 HOH 57 257 103 HOH HOH B . H 3 HOH 58 258 105 HOH HOH B . H 3 HOH 59 259 106 HOH HOH B . H 3 HOH 60 260 107 HOH HOH B . H 3 HOH 61 261 108 HOH HOH B . H 3 HOH 62 262 109 HOH HOH B . H 3 HOH 63 263 110 HOH HOH B . H 3 HOH 64 264 111 HOH HOH B . H 3 HOH 65 265 112 HOH HOH B . H 3 HOH 66 266 113 HOH HOH B . H 3 HOH 67 267 116 HOH HOH B . H 3 HOH 68 268 117 HOH HOH B . H 3 HOH 69 269 119 HOH HOH B . H 3 HOH 70 270 124 HOH HOH B . H 3 HOH 71 271 125 HOH HOH B . H 3 HOH 72 272 126 HOH HOH B . H 3 HOH 73 273 127 HOH HOH B . H 3 HOH 74 274 128 HOH HOH B . H 3 HOH 75 275 134 HOH HOH B . H 3 HOH 76 276 135 HOH HOH B . H 3 HOH 77 277 137 HOH HOH B . H 3 HOH 78 278 138 HOH HOH B . H 3 HOH 79 279 140 HOH HOH B . H 3 HOH 80 280 141 HOH HOH B . H 3 HOH 81 281 142 HOH HOH B . H 3 HOH 82 282 145 HOH HOH B . H 3 HOH 83 283 147 HOH HOH B . H 3 HOH 84 284 148 HOH HOH B . H 3 HOH 85 285 152 HOH HOH B . H 3 HOH 86 286 153 HOH HOH B . H 3 HOH 87 287 162 HOH HOH B . H 3 HOH 88 288 163 HOH HOH B . H 3 HOH 89 289 165 HOH HOH B . H 3 HOH 90 290 166 HOH HOH B . H 3 HOH 91 291 167 HOH HOH B . H 3 HOH 92 292 168 HOH HOH B . H 3 HOH 93 293 170 HOH HOH B . H 3 HOH 94 294 171 HOH HOH B . H 3 HOH 95 295 172 HOH HOH B . H 3 HOH 96 296 173 HOH HOH B . H 3 HOH 97 297 174 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3VP9 _cell.length_a 56.102 _cell.length_b 41.461 _cell.length_c 103.889 _cell.angle_alpha 90.00 _cell.angle_beta 95.35 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VP9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VP9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '14%(v/v) 1,4-dioxane, 0.1M MES monohydrate, 1.6M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3VP9 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 409 _reflns.d_resolution_high 1.799 _reflns.number_obs 20399 _reflns.number_all 20399 _reflns.percent_possible_obs 91.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 91.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VP9 _refine.ls_number_reflns_obs 19436 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.292 _refine.ls_d_res_high 1.799 _refine.ls_percent_reflns_obs 87.02 _refine.ls_R_factor_obs 0.2220 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2203 _refine.ls_R_factor_R_free 0.2575 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.84 _refine.ls_number_reflns_R_free 941 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.B_iso_mean 45.7701 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.aniso_B[1][1] -6.9989 _refine.aniso_B[2][2] -5.4813 _refine.aniso_B[3][3] 12.4802 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 9.9669 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 79.794 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.14 _refine.overall_FOM_work_R_set 0.8165 _refine.B_iso_max 98.040 _refine.B_iso_min 14.380 _refine.pdbx_overall_phase_error 25.2500 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1269 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1467 _refine_hist.d_res_high 1.799 _refine_hist.d_res_low 33.292 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1308 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1738 1.071 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 177 0.074 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 230 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 518 20.874 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.7993 1.8941 7 79.0000 2383 . 0.2377 0.2730 . 123 . 2506 . 'X-RAY DIFFRACTION' . 1.8941 2.0128 7 85.0000 2569 . 0.2255 0.2461 . 108 . 2677 . 'X-RAY DIFFRACTION' . 2.0128 2.1682 7 90.0000 2743 . 0.1997 0.2105 . 127 . 2870 . 'X-RAY DIFFRACTION' . 2.1682 2.3863 7 90.0000 2691 . 0.1874 0.2372 . 150 . 2841 . 'X-RAY DIFFRACTION' . 2.3863 2.7315 7 90.0000 2738 . 0.2079 0.2698 . 145 . 2883 . 'X-RAY DIFFRACTION' . 2.7315 3.4408 7 90.0000 2724 . 0.2133 0.2425 . 157 . 2881 . 'X-RAY DIFFRACTION' . 3.4408 33.2977 7 85.0000 2647 . 0.2423 0.2837 . 131 . 2778 . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 3VP9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VP9 _struct.title 'Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VP9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Four helix bundle, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TUP1_YEAST _struct_ref.pdbx_db_accession P16649 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYELELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VP9 A 1 ? 92 ? P16649 1 ? 92 ? 1 92 2 1 3VP9 B 1 ? 92 ? P16649 1 ? 92 ? 1 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VP9 ARG A 62 ? UNP P16649 LEU 62 'engineered mutation' 62 1 2 3VP9 ARG B 62 ? UNP P16649 LEU 62 'engineered mutation' 62 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9400 ? 1 MORE -45 ? 1 'SSA (A^2)' 21340 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 56.1020000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 26 ? GLU A 85 ? VAL A 26 GLU A 85 1 ? 60 HELX_P HELX_P2 2 ILE B 19 ? LEU B 24 ? ILE B 19 LEU B 24 1 ? 6 HELX_P HELX_P3 3 VAL B 26 ? ASP B 88 ? VAL B 26 ASP B 88 1 ? 63 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DIO 101 ? 5 'BINDING SITE FOR RESIDUE DIO A 101' AC2 Software B DIO 101 ? 5 'BINDING SITE FOR RESIDUE DIO B 101' AC3 Software B DIO 102 ? 7 'BINDING SITE FOR RESIDUE DIO B 102' AC4 Software B DIO 103 ? 7 'BINDING SITE FOR RESIDUE DIO B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 56 ? ARG A 56 . ? 1_555 ? 2 AC1 5 VAL A 59 ? VAL A 59 . ? 1_555 ? 3 AC1 5 TYR A 60 ? TYR A 60 . ? 1_555 ? 4 AC1 5 ARG B 62 ? ARG B 62 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 274 . ? 1_555 ? 6 AC2 5 ARG A 62 ? ARG A 62 . ? 1_555 ? 7 AC2 5 VAL B 59 ? VAL B 59 . ? 1_555 ? 8 AC2 5 TYR B 60 ? TYR B 60 . ? 1_555 ? 9 AC2 5 GLU B 63 ? GLU B 63 . ? 1_555 ? 10 AC2 5 ARG B 67 ? ARG B 67 . ? 1_555 ? 11 AC3 7 HIS A 66 ? HIS A 66 . ? 1_555 ? 12 AC3 7 TYR A 73 ? TYR A 73 . ? 1_555 ? 13 AC3 7 HIS B 66 ? HIS B 66 . ? 1_555 ? 14 AC3 7 MET B 69 ? MET B 69 . ? 1_555 ? 15 AC3 7 LYS B 70 ? LYS B 70 . ? 1_555 ? 16 AC3 7 TYR B 73 ? TYR B 73 . ? 1_555 ? 17 AC3 7 HOH H . ? HOH B 244 . ? 1_555 ? 18 AC4 7 LEU A 64 ? LEU A 64 . ? 4_545 ? 19 AC4 7 LYS A 68 ? LYS A 68 . ? 4_545 ? 20 AC4 7 ASP A 71 ? ASP A 71 . ? 4_545 ? 21 AC4 7 HOH G . ? HOH A 224 . ? 4_545 ? 22 AC4 7 ASN B 57 ? ASN B 57 . ? 1_555 ? 23 AC4 7 TYR B 60 ? TYR B 60 . ? 1_555 ? 24 AC4 7 GLU B 61 ? GLU B 61 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 249 ? ? O A HOH 256 ? ? 1.82 2 1 O A HOH 220 ? ? O B HOH 226 ? ? 1.99 3 1 O A HOH 266 ? ? O A HOH 269 ? ? 2.02 4 1 O B HOH 261 ? ? O B HOH 268 ? ? 2.09 5 1 O A HOH 219 ? ? O A HOH 237 ? ? 2.11 6 1 O B HOH 283 ? ? O B HOH 286 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 262 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 262 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 18 ? ? 170.82 -3.28 2 1 GLN A 25 ? ? -79.31 40.69 3 1 VAL A 26 ? ? -160.02 -29.67 4 1 ARG A 34 ? ? -68.31 1.56 5 1 LEU A 35 ? ? -107.18 -60.89 6 1 LEU B 16 ? ? -68.25 52.01 7 1 ASP B 17 ? ? -166.25 2.21 8 1 GLU B 22 ? ? -96.14 -61.77 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 227 ? G HOH . 2 1 A HOH 231 ? G HOH . 3 1 A HOH 247 ? G HOH . 4 1 B HOH 259 ? H HOH . 5 1 B HOH 263 ? H HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A SER 6 ? A SER 6 7 1 Y 1 A ASN 7 ? A ASN 7 8 1 Y 1 A THR 8 ? A THR 8 9 1 Y 1 A GLN 9 ? A GLN 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A LYS 11 ? A LYS 11 12 1 Y 1 A LEU 12 ? A LEU 12 13 1 Y 1 A ASN 13 ? A ASN 13 14 1 Y 1 A GLU 14 ? A GLU 14 15 1 Y 1 A LEU 15 ? A LEU 15 16 1 Y 1 A LEU 16 ? A LEU 16 17 1 Y 1 A ARG 87 ? A ARG 87 18 1 Y 1 A ASP 88 ? A ASP 88 19 1 Y 1 A HIS 89 ? A HIS 89 20 1 Y 1 A GLN 90 ? A GLN 90 21 1 Y 1 A ILE 91 ? A ILE 91 22 1 Y 1 A ALA 92 ? A ALA 92 23 1 Y 1 B MET 1 ? B MET 1 24 1 Y 1 B THR 2 ? B THR 2 25 1 Y 1 B ALA 3 ? B ALA 3 26 1 Y 1 B SER 4 ? B SER 4 27 1 Y 1 B VAL 5 ? B VAL 5 28 1 Y 1 B SER 6 ? B SER 6 29 1 Y 1 B ASN 7 ? B ASN 7 30 1 Y 1 B THR 8 ? B THR 8 31 1 Y 1 B GLN 9 ? B GLN 9 32 1 Y 1 B ASN 10 ? B ASN 10 33 1 Y 1 B LYS 11 ? B LYS 11 34 1 Y 1 B LEU 12 ? B LEU 12 35 1 Y 1 B ASN 13 ? B ASN 13 36 1 Y 1 B ILE 91 ? B ILE 91 37 1 Y 1 B ALA 92 ? B ALA 92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DIO C1 C N N 74 DIO C2 C N N 75 DIO "C1'" C N N 76 DIO "C2'" C N N 77 DIO O1 O N N 78 DIO "O1'" O N N 79 DIO H11 H N N 80 DIO H12 H N N 81 DIO H21 H N N 82 DIO H22 H N N 83 DIO "H1'1" H N N 84 DIO "H1'2" H N N 85 DIO "H2'1" H N N 86 DIO "H2'2" H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TYR N N N N 304 TYR CA C N S 305 TYR C C N N 306 TYR O O N N 307 TYR CB C N N 308 TYR CG C Y N 309 TYR CD1 C Y N 310 TYR CD2 C Y N 311 TYR CE1 C Y N 312 TYR CE2 C Y N 313 TYR CZ C Y N 314 TYR OH O N N 315 TYR OXT O N N 316 TYR H H N N 317 TYR H2 H N N 318 TYR HA H N N 319 TYR HB2 H N N 320 TYR HB3 H N N 321 TYR HD1 H N N 322 TYR HD2 H N N 323 TYR HE1 H N N 324 TYR HE2 H N N 325 TYR HH H N N 326 TYR HXT H N N 327 VAL N N N N 328 VAL CA C N S 329 VAL C C N N 330 VAL O O N N 331 VAL CB C N N 332 VAL CG1 C N N 333 VAL CG2 C N N 334 VAL OXT O N N 335 VAL H H N N 336 VAL H2 H N N 337 VAL HA H N N 338 VAL HB H N N 339 VAL HG11 H N N 340 VAL HG12 H N N 341 VAL HG13 H N N 342 VAL HG21 H N N 343 VAL HG22 H N N 344 VAL HG23 H N N 345 VAL HXT H N N 346 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DIO C1 "C1'" sing N N 70 DIO C1 O1 sing N N 71 DIO C1 H11 sing N N 72 DIO C1 H12 sing N N 73 DIO C2 "C2'" sing N N 74 DIO C2 O1 sing N N 75 DIO C2 H21 sing N N 76 DIO C2 H22 sing N N 77 DIO "C1'" "O1'" sing N N 78 DIO "C1'" "H1'1" sing N N 79 DIO "C1'" "H1'2" sing N N 80 DIO "C2'" "O1'" sing N N 81 DIO "C2'" "H2'1" sing N N 82 DIO "C2'" "H2'2" sing N N 83 GLN N CA sing N N 84 GLN N H sing N N 85 GLN N H2 sing N N 86 GLN CA C sing N N 87 GLN CA CB sing N N 88 GLN CA HA sing N N 89 GLN C O doub N N 90 GLN C OXT sing N N 91 GLN CB CG sing N N 92 GLN CB HB2 sing N N 93 GLN CB HB3 sing N N 94 GLN CG CD sing N N 95 GLN CG HG2 sing N N 96 GLN CG HG3 sing N N 97 GLN CD OE1 doub N N 98 GLN CD NE2 sing N N 99 GLN NE2 HE21 sing N N 100 GLN NE2 HE22 sing N N 101 GLN OXT HXT sing N N 102 GLU N CA sing N N 103 GLU N H sing N N 104 GLU N H2 sing N N 105 GLU CA C sing N N 106 GLU CA CB sing N N 107 GLU CA HA sing N N 108 GLU C O doub N N 109 GLU C OXT sing N N 110 GLU CB CG sing N N 111 GLU CB HB2 sing N N 112 GLU CB HB3 sing N N 113 GLU CG CD sing N N 114 GLU CG HG2 sing N N 115 GLU CG HG3 sing N N 116 GLU CD OE1 doub N N 117 GLU CD OE2 sing N N 118 GLU OE2 HE2 sing N N 119 GLU OXT HXT sing N N 120 GLY N CA sing N N 121 GLY N H sing N N 122 GLY N H2 sing N N 123 GLY CA C sing N N 124 GLY CA HA2 sing N N 125 GLY CA HA3 sing N N 126 GLY C O doub N N 127 GLY C OXT sing N N 128 GLY OXT HXT sing N N 129 HIS N CA sing N N 130 HIS N H sing N N 131 HIS N H2 sing N N 132 HIS CA C sing N N 133 HIS CA CB sing N N 134 HIS CA HA sing N N 135 HIS C O doub N N 136 HIS C OXT sing N N 137 HIS CB CG sing N N 138 HIS CB HB2 sing N N 139 HIS CB HB3 sing N N 140 HIS CG ND1 sing Y N 141 HIS CG CD2 doub Y N 142 HIS ND1 CE1 doub Y N 143 HIS ND1 HD1 sing N N 144 HIS CD2 NE2 sing Y N 145 HIS CD2 HD2 sing N N 146 HIS CE1 NE2 sing Y N 147 HIS CE1 HE1 sing N N 148 HIS NE2 HE2 sing N N 149 HIS OXT HXT sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 ILE N CA sing N N 153 ILE N H sing N N 154 ILE N H2 sing N N 155 ILE CA C sing N N 156 ILE CA CB sing N N 157 ILE CA HA sing N N 158 ILE C O doub N N 159 ILE C OXT sing N N 160 ILE CB CG1 sing N N 161 ILE CB CG2 sing N N 162 ILE CB HB sing N N 163 ILE CG1 CD1 sing N N 164 ILE CG1 HG12 sing N N 165 ILE CG1 HG13 sing N N 166 ILE CG2 HG21 sing N N 167 ILE CG2 HG22 sing N N 168 ILE CG2 HG23 sing N N 169 ILE CD1 HD11 sing N N 170 ILE CD1 HD12 sing N N 171 ILE CD1 HD13 sing N N 172 ILE OXT HXT sing N N 173 LEU N CA sing N N 174 LEU N H sing N N 175 LEU N H2 sing N N 176 LEU CA C sing N N 177 LEU CA CB sing N N 178 LEU CA HA sing N N 179 LEU C O doub N N 180 LEU C OXT sing N N 181 LEU CB CG sing N N 182 LEU CB HB2 sing N N 183 LEU CB HB3 sing N N 184 LEU CG CD1 sing N N 185 LEU CG CD2 sing N N 186 LEU CG HG sing N N 187 LEU CD1 HD11 sing N N 188 LEU CD1 HD12 sing N N 189 LEU CD1 HD13 sing N N 190 LEU CD2 HD21 sing N N 191 LEU CD2 HD22 sing N N 192 LEU CD2 HD23 sing N N 193 LEU OXT HXT sing N N 194 LYS N CA sing N N 195 LYS N H sing N N 196 LYS N H2 sing N N 197 LYS CA C sing N N 198 LYS CA CB sing N N 199 LYS CA HA sing N N 200 LYS C O doub N N 201 LYS C OXT sing N N 202 LYS CB CG sing N N 203 LYS CB HB2 sing N N 204 LYS CB HB3 sing N N 205 LYS CG CD sing N N 206 LYS CG HG2 sing N N 207 LYS CG HG3 sing N N 208 LYS CD CE sing N N 209 LYS CD HD2 sing N N 210 LYS CD HD3 sing N N 211 LYS CE NZ sing N N 212 LYS CE HE2 sing N N 213 LYS CE HE3 sing N N 214 LYS NZ HZ1 sing N N 215 LYS NZ HZ2 sing N N 216 LYS NZ HZ3 sing N N 217 LYS OXT HXT sing N N 218 MET N CA sing N N 219 MET N H sing N N 220 MET N H2 sing N N 221 MET CA C sing N N 222 MET CA CB sing N N 223 MET CA HA sing N N 224 MET C O doub N N 225 MET C OXT sing N N 226 MET CB CG sing N N 227 MET CB HB2 sing N N 228 MET CB HB3 sing N N 229 MET CG SD sing N N 230 MET CG HG2 sing N N 231 MET CG HG3 sing N N 232 MET SD CE sing N N 233 MET CE HE1 sing N N 234 MET CE HE2 sing N N 235 MET CE HE3 sing N N 236 MET OXT HXT sing N N 237 PHE N CA sing N N 238 PHE N H sing N N 239 PHE N H2 sing N N 240 PHE CA C sing N N 241 PHE CA CB sing N N 242 PHE CA HA sing N N 243 PHE C O doub N N 244 PHE C OXT sing N N 245 PHE CB CG sing N N 246 PHE CB HB2 sing N N 247 PHE CB HB3 sing N N 248 PHE CG CD1 doub Y N 249 PHE CG CD2 sing Y N 250 PHE CD1 CE1 sing Y N 251 PHE CD1 HD1 sing N N 252 PHE CD2 CE2 doub Y N 253 PHE CD2 HD2 sing N N 254 PHE CE1 CZ doub Y N 255 PHE CE1 HE1 sing N N 256 PHE CE2 CZ sing Y N 257 PHE CE2 HE2 sing N N 258 PHE CZ HZ sing N N 259 PHE OXT HXT sing N N 260 SER N CA sing N N 261 SER N H sing N N 262 SER N H2 sing N N 263 SER CA C sing N N 264 SER CA CB sing N N 265 SER CA HA sing N N 266 SER C O doub N N 267 SER C OXT sing N N 268 SER CB OG sing N N 269 SER CB HB2 sing N N 270 SER CB HB3 sing N N 271 SER OG HG sing N N 272 SER OXT HXT sing N N 273 THR N CA sing N N 274 THR N H sing N N 275 THR N H2 sing N N 276 THR CA C sing N N 277 THR CA CB sing N N 278 THR CA HA sing N N 279 THR C O doub N N 280 THR C OXT sing N N 281 THR CB OG1 sing N N 282 THR CB CG2 sing N N 283 THR CB HB sing N N 284 THR OG1 HG1 sing N N 285 THR CG2 HG21 sing N N 286 THR CG2 HG22 sing N N 287 THR CG2 HG23 sing N N 288 THR OXT HXT sing N N 289 TYR N CA sing N N 290 TYR N H sing N N 291 TYR N H2 sing N N 292 TYR CA C sing N N 293 TYR CA CB sing N N 294 TYR CA HA sing N N 295 TYR C O doub N N 296 TYR C OXT sing N N 297 TYR CB CG sing N N 298 TYR CB HB2 sing N N 299 TYR CB HB3 sing N N 300 TYR CG CD1 doub Y N 301 TYR CG CD2 sing Y N 302 TYR CD1 CE1 sing Y N 303 TYR CD1 HD1 sing N N 304 TYR CD2 CE2 doub Y N 305 TYR CD2 HD2 sing N N 306 TYR CE1 CZ doub Y N 307 TYR CE1 HE1 sing N N 308 TYR CE2 CZ sing Y N 309 TYR CE2 HE2 sing N N 310 TYR CZ OH sing N N 311 TYR OH HH sing N N 312 TYR OXT HXT sing N N 313 VAL N CA sing N N 314 VAL N H sing N N 315 VAL N H2 sing N N 316 VAL CA C sing N N 317 VAL CA CB sing N N 318 VAL CA HA sing N N 319 VAL C O doub N N 320 VAL C OXT sing N N 321 VAL CB CG1 sing N N 322 VAL CB CG2 sing N N 323 VAL CB HB sing N N 324 VAL CG1 HG11 sing N N 325 VAL CG1 HG12 sing N N 326 VAL CG1 HG13 sing N N 327 VAL CG2 HG21 sing N N 328 VAL CG2 HG22 sing N N 329 VAL CG2 HG23 sing N N 330 VAL OXT HXT sing N N 331 # _atom_sites.entry_id 3VP9 _atom_sites.fract_transf_matrix[1][1] 0.017825 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001669 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024119 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009668 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_