HEADER ELECTRON TRANSPORT 09-APR-12 3VRC TITLE CRYSTAL STRUCTURE OF CYTOCHROME C' FROM THERMOCHROMATIUM TEPIDUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C'; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHROMATIUM TEPIDUM; SOURCE 3 ORGANISM_TAXID: 1050 KEYWDS C-TYPE CYTPCHROME, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,Y.KIMURA,H.SUZUKI,K.MIKI,Z.-Y.WANG REVDAT 3 08-NOV-23 3VRC 1 REMARK LINK REVDAT 2 22-NOV-17 3VRC 1 REMARK REVDAT 1 12-SEP-12 3VRC 0 JRNL AUTH Y.HIRANO,Y.KIMURA,H.SUZUKI,K.MIKI,Z.-Y.WANG JRNL TITL STRUCTURE ANALYSIS AND COMPARATIVE CHARACTERIZATION OF THE JRNL TITL 2 CYTOCHROME C' AND FLAVOCYTOCHROME C FROM THERMOPHILIC PURPLE JRNL TITL 3 PHOTOSYNTHETIC BACTERIUM THERMOCHROMATIUM TEPIDUM JRNL REF BIOCHEMISTRY V. 51 6556 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22827326 JRNL DOI 10.1021/BI3005522 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 121269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 341 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2951 ; 2.482 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 4.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;39.809 ;25.532 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;13.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1708 ; 0.027 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2152 ; 6.752 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 158 ;21.720 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2450 ;11.907 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3VRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000095404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127655 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1BBH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M CADMIUM CHLORIDE, REMARK 280 0.1M SODIUM ACETATE, PH 4.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.59450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 124 CAC HEC B 201 1.88 REMARK 500 SG CYS A 124 CAC HEC A 200 1.89 REMARK 500 SG CYS B 121 CAB HEC B 201 1.92 REMARK 500 SG CYS A 121 CAB HEC A 200 1.92 REMARK 500 O HOH B 458 O HOH B 460 2.06 REMARK 500 O HOH A 411 O HOH A 439 2.16 REMARK 500 O HOH B 458 O HOH B 459 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 44.59 -140.25 REMARK 500 ASN B 80 50.02 -140.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 7 OE1 REMARK 620 2 GLU A 7 OE2 56.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 76 OE1 REMARK 620 2 GLU A 76 OE2 58.4 REMARK 620 3 HOH A 382 O 97.6 154.6 REMARK 620 4 HOH A 457 O 105.0 99.5 94.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 HOH A 337 O 90.7 REMARK 620 3 HOH A 402 O 98.8 161.9 REMARK 620 4 HOH A 502 O 78.3 83.5 83.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 125 NE2 REMARK 620 2 HEC A 200 NA 96.0 REMARK 620 3 HEC A 200 NB 90.7 89.8 REMARK 620 4 HEC A 200 NC 90.8 173.2 90.6 REMARK 620 5 HEC A 200 ND 96.9 89.3 172.3 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 HOH A 319 O 85.3 REMARK 620 3 HOH A 320 O 85.2 92.1 REMARK 620 4 HOH A 325 O 93.8 175.4 83.4 REMARK 620 5 HOH A 371 O 171.5 92.3 103.1 89.2 REMARK 620 6 HOH A 501 O 79.2 90.4 164.0 93.9 92.6 REMARK 620 7 HOH A 501 O 94.3 55.4 147.4 129.1 77.6 39.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 37 OD2 REMARK 620 2 ASP B 37 OD1 53.7 REMARK 620 3 HOH B 435 O 80.7 100.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD1 REMARK 620 2 HOH B 437 O 104.8 REMARK 620 3 HOH B 474 O 86.8 94.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 125 NE2 REMARK 620 2 HEC B 201 NA 93.4 REMARK 620 3 HEC B 201 NB 89.2 89.3 REMARK 620 4 HEC B 201 NC 91.7 174.9 90.7 REMARK 620 5 HEC B 201 ND 97.6 89.7 173.2 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 311 O REMARK 620 2 HOH B 424 O 73.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 378 O REMARK 620 2 HOH B 379 O 133.2 REMARK 620 3 HOH B 537 O 28.2 151.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VRD RELATED DB: PDB DBREF 3VRC A 1 131 UNP C7G528 C7G528_THETI 24 154 DBREF 3VRC B 1 131 UNP C7G528 C7G528_THETI 24 154 SEQRES 1 A 131 ALA ASP LEU SER PRO GLU GLU GLN ILE GLU THR ARG GLN SEQRES 2 A 131 ALA GLY TYR ALA PHE MET ALA TRP ASN MET GLY LYS ILE SEQRES 3 A 131 LYS ALA ASN LEU GLU GLY GLU TYR ASN ALA ASP GLN VAL SEQRES 4 A 131 ARG ALA ALA ALA ASN VAL VAL ALA ALA ILE ALA ASN SER SEQRES 5 A 131 GLY MET GLY ALA LEU TYR GLY PRO GLY THR ASP LYS ASN SEQRES 6 A 131 VAL GLY ALA VAL LYS THR ARG ALA LYS PRO GLU LEU PHE SEQRES 7 A 131 GLN ASN LEU GLU ASP VAL GLY LYS LEU ALA ARG ASP LEU SEQRES 8 A 131 GLY THR ALA ALA ASN ALA LEU ALA ALA ALA ALA ALA THR SEQRES 9 A 131 GLY GLU ALA ASN ALA VAL LYS SER ALA PHE ALA ASP VAL SEQRES 10 A 131 GLY ALA ALA CYS LYS ALA CYS HIS GLN LYS TYR ARG ALA SEQRES 11 A 131 ASP SEQRES 1 B 131 ALA ASP LEU SER PRO GLU GLU GLN ILE GLU THR ARG GLN SEQRES 2 B 131 ALA GLY TYR ALA PHE MET ALA TRP ASN MET GLY LYS ILE SEQRES 3 B 131 LYS ALA ASN LEU GLU GLY GLU TYR ASN ALA ASP GLN VAL SEQRES 4 B 131 ARG ALA ALA ALA ASN VAL VAL ALA ALA ILE ALA ASN SER SEQRES 5 B 131 GLY MET GLY ALA LEU TYR GLY PRO GLY THR ASP LYS ASN SEQRES 6 B 131 VAL GLY ALA VAL LYS THR ARG ALA LYS PRO GLU LEU PHE SEQRES 7 B 131 GLN ASN LEU GLU ASP VAL GLY LYS LEU ALA ARG ASP LEU SEQRES 8 B 131 GLY THR ALA ALA ASN ALA LEU ALA ALA ALA ALA ALA THR SEQRES 9 B 131 GLY GLU ALA ASN ALA VAL LYS SER ALA PHE ALA ASP VAL SEQRES 10 B 131 GLY ALA ALA CYS LYS ALA CYS HIS GLN LYS TYR ARG ALA SEQRES 11 B 131 ASP HET HEC A 200 48 HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CL A 206 1 HET PEG A 207 7 HET PG4 A 208 13 HET HEC B 201 43 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HETNAM HEC HEME C HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 CD 9(CD 2+) FORMUL 9 CL CL 1- FORMUL 10 PEG C4 H10 O3 FORMUL 11 PG4 C8 H18 O5 FORMUL 17 HOH *479(H2 O) HELIX 1 1 SER A 4 GLY A 32 1 29 HELIX 2 2 ASN A 35 ASN A 51 1 17 HELIX 3 3 SER A 52 TYR A 58 5 7 HELIX 4 4 LYS A 74 GLN A 79 5 6 HELIX 5 5 ASN A 80 THR A 104 1 25 HELIX 6 6 GLU A 106 ARG A 129 1 24 HELIX 7 7 SER B 4 GLY B 32 1 29 HELIX 8 8 ASN B 35 ASN B 51 1 17 HELIX 9 9 SER B 52 TYR B 58 5 7 HELIX 10 10 LYS B 74 GLN B 79 1 6 HELIX 11 11 ASN B 80 THR B 104 1 25 HELIX 12 12 GLU B 106 ARG B 129 1 24 LINK OE1 GLU A 7 CD CD A 205 1555 1555 2.33 LINK OE2 GLU A 7 CD CD A 205 1555 1555 2.34 LINK OE1 GLU A 76 CD CD A 204 1555 1555 2.21 LINK OE2 GLU A 76 CD CD A 204 1555 1555 2.24 LINK OE2 GLU A 82 CD CD A 201 1555 1555 2.16 LINK OD1 ASP A 116 CD CD A 203 1555 1555 2.26 LINK NE2 HIS A 125 FE HEC A 200 1555 1555 2.13 LINK OD1 ASP A 131 CD CD A 202 1555 1555 2.26 LINK CD CD A 202 O HOH A 319 1555 1555 2.39 LINK CD CD A 202 O HOH A 320 1555 1555 2.30 LINK CD CD A 202 O HOH A 325 1555 1555 2.21 LINK CD CD A 202 O HOH A 371 1555 1555 2.49 LINK CD CD A 202 O AHOH A 501 1555 1555 2.31 LINK CD CD A 202 O BHOH A 501 1555 1555 2.40 LINK CD CD A 203 O HOH A 337 1555 1555 2.31 LINK CD CD A 203 O HOH A 402 1555 1555 2.66 LINK CD CD A 203 O HOH A 502 1555 1555 2.12 LINK CD CD A 204 O HOH A 382 1555 1555 2.44 LINK CD CD A 204 O HOH A 457 1555 1555 2.53 LINK OD2 ASP B 37 CD CD B 203 1555 1555 2.38 LINK OD1 ASP B 37 CD CD B 203 1555 1555 2.56 LINK OD1 ASP B 63 CD CD B 205 1555 1555 2.56 LINK NE2 HIS B 125 FE HEC B 201 1555 1555 2.13 LINK CD CD B 202 O BHOH B 311 1555 1555 2.53 LINK CD CD B 202 O BHOH B 424 1555 1555 2.68 LINK CD CD B 203 O HOH B 435 1555 1555 2.39 LINK CD CD B 204 O AHOH B 378 1555 1555 2.06 LINK CD CD B 204 O HOH B 379 1555 1555 2.35 LINK CD CD B 204 O HOH B 537 1555 1555 2.38 LINK CD CD B 205 O HOH B 437 1555 1555 2.44 LINK CD CD B 205 O HOH B 474 1555 1555 2.36 SITE 1 AC1 25 ARG A 12 GLN A 13 TYR A 16 MET A 19 SITE 2 AC1 25 TYR A 58 THR A 71 ARG A 72 LEU A 77 SITE 3 AC1 25 VAL A 84 ALA A 88 CYS A 121 CYS A 124 SITE 4 AC1 25 HIS A 125 ARG A 129 HOH A 302 HOH A 390 SITE 5 AC1 25 HOH A 471 GLU B 106 ASN B 108 CD B 202 SITE 6 AC1 25 HOH B 302 HOH B 380 HOH B 424 HOH B 518 SITE 7 AC1 25 HOH B 529 SITE 1 AC2 3 GLU A 82 CL A 206 GLU B 76 SITE 1 AC3 6 ASP A 131 HOH A 319 HOH A 320 HOH A 325 SITE 2 AC3 6 HOH A 371 HOH A 501 SITE 1 AC4 4 ASP A 116 HOH A 337 HOH A 402 HOH A 502 SITE 1 AC5 3 GLU A 76 HOH A 382 HOH A 457 SITE 1 AC6 3 GLU A 7 HOH A 486 HOH A 499 SITE 1 AC7 4 CD A 201 HOH A 460 PRO B 75 GLU B 76 SITE 1 AC8 7 GLU A 82 ASP A 83 ARG A 89 HOH A 379 SITE 2 AC8 7 HOH A 436 GLN B 79 HOH B 349 SITE 1 AC9 10 TYR A 58 GLY A 59 PRO A 60 GLY A 61 SITE 2 AC9 10 ASP A 63 LYS A 64 PHE A 78 LEU A 81 SITE 3 AC9 10 HOH A 514 HOH A 515 SITE 1 BC1 16 ARG B 12 GLN B 13 TYR B 16 ALA B 17 SITE 2 BC1 16 TYR B 58 THR B 71 ARG B 72 LEU B 77 SITE 3 BC1 16 VAL B 84 ALA B 88 LEU B 91 CYS B 121 SITE 4 BC1 16 CYS B 124 HIS B 125 ARG B 129 HOH B 304 SITE 1 BC2 6 HEC A 200 ASN B 108 HOH B 302 HOH B 311 SITE 2 BC2 6 HOH B 424 HOH B 518 SITE 1 BC3 4 ASP B 37 HOH B 435 HOH B 523 HOH B 542 SITE 1 BC4 6 ASP B 131 HOH B 344 HOH B 378 HOH B 379 SITE 2 BC4 6 HOH B 473 HOH B 537 SITE 1 BC5 3 ASP B 63 HOH B 437 HOH B 474 CRYST1 41.310 57.189 54.225 90.00 94.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024207 0.000000 0.002037 0.00000 SCALE2 0.000000 0.017486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018507 0.00000