HEADER PROTEIN BINDING/TRANSFERASE 13-APR-12 3VRO TITLE CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C IN TITLE 2 COMPLEX WITH PHOSPHO-SRC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL TRANSDUCTION PROTEIN CBL-C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TYROSINE KINASE BINDING DOMAIN; COMPND 5 SYNONYM: RING FINGER PROTEIN 57, SH3-BINDING PROTEIN CBL-3, SH3- COMPND 6 BINDING PROTEIN CBL-C; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PHOSPHO-SRC PEPTIDE, RESIDUES 412-424; COMPND 12 SYNONYM: PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC; COMPND 13 EC: 2.7.10.2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBLC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PTB DOMAIN, TKB (TYROSINE KINASE BINDING) DOMAIN, FOUR-HELIX BUNDLE KEYWDS 2 (4H), CALCIUM-BINDING EF HAND, DIVERGENT SH2 DOMAIN, REGULATOR OF KEYWDS 3 EGFR MEDIATED SIGNAL TRANSDUCTION, UBIQUITOUSLY EXPRESSED, PROTEIN KEYWDS 4 BINDING-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKESHITA,T.TEZUKA,Y.ISOZAKI,E.YAMASHITA,M.SUZUKI,Y.YAMANASHI, AUTHOR 2 T.YAMAMOTO,A.NAKAGAWA REVDAT 2 22-NOV-17 3VRO 1 REMARK REVDAT 1 06-MAR-13 3VRO 0 JRNL AUTH K.TAKESHITA,T.TEZUKA,Y.ISOZAKI,E.YAMASHITA,M.SUZUKI,M.KIM, JRNL AUTH 2 Y.YAMANASHI,T.YAMAMOTO,A.NAKAGAWA JRNL TITL STRUCTURAL FLEXIBILITY REGULATES PHOSPHOPEPTIDE-BINDING JRNL TITL 2 ACTIVITY OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C. JRNL REF J.BIOCHEM. V. 152 487 2012 JRNL REFN ISSN 0021-924X JRNL PMID 22888118 JRNL DOI 10.1093/JB/MVS085 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2347 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.895 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;34.230 ;22.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;15.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1791 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 1.352 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2320 ; 2.500 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 3.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 866 ; 6.217 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3VRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000095416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 21.6090 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : 0.53800 REMARK 200 FOR SHELL : 3.283 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.1M AMMONIUM FORMATE, REMARK 280 0.1M NDSB-201, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.38050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.38050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.64100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.24650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.64100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.24650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.38050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.64100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.24650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.38050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.64100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.24650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 TRP A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 GLN A 11 REMARK 465 TRP A 12 REMARK 465 ASP A 34 REMARK 465 PRO A 35 REMARK 465 ARG A 36 REMARK 465 LEU A 37 REMARK 465 SER A 38 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 GLY A 67 REMARK 465 PRO A 99 REMARK 465 PRO A 100 REMARK 465 ARG A 101 REMARK 465 GLY A 102 REMARK 465 ARG A 103 REMARK 465 ARG A 104 REMARK 465 SER A 105 REMARK 465 ALA A 106 REMARK 465 ASN A 107 REMARK 465 ASP A 108 REMARK 465 GLU A 109 REMARK 465 LEU A 110 REMARK 465 PHE A 111 REMARK 465 ARG A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 GLU A 321 REMARK 465 LEU A 322 REMARK 465 GLY A 323 REMARK 465 ARG B 412 REMARK 465 LEU B 413 REMARK 465 ILE B 414 REMARK 465 GLU B 415 REMARK 465 ASP B 416 REMARK 465 ARG B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 291 76.07 -66.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 199 OD1 REMARK 620 2 GLU A 210 OE2 91.0 REMARK 620 3 HIS A 205 O 95.9 117.0 REMARK 620 4 THR A 201 OG1 96.4 83.1 156.2 REMARK 620 5 SER A 203 OG 95.0 162.6 78.6 80.0 REMARK 620 6 GLU A 210 OE1 117.6 49.1 73.2 118.1 138.4 REMARK 620 7 HOH A 502 O 175.7 89.6 80.1 87.9 85.6 60.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VRN RELATED DB: PDB REMARK 900 RELATED ID: 3VRP RELATED DB: PDB REMARK 900 RELATED ID: 3VRQ RELATED DB: PDB REMARK 900 RELATED ID: 3VRR RELATED DB: PDB DBREF 3VRO A 1 323 UNP Q9ULV8 CBLC_HUMAN 1 323 DBREF 3VRO B 412 424 UNP P12931 SRC_HUMAN 412 424 SEQADV 3VRO GLY A -7 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO PRO A -6 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO LEU A -5 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO GLY A -4 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO SER A -3 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO PRO A -2 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO GLU A -1 UNP Q9ULV8 EXPRESSION TAG SEQADV 3VRO PHE A 0 UNP Q9ULV8 EXPRESSION TAG SEQRES 1 A 331 GLY PRO LEU GLY SER PRO GLU PHE MET ALA LEU ALA VAL SEQRES 2 A 331 ALA PRO TRP GLY ARG GLN TRP GLU GLU ALA ARG ALA LEU SEQRES 3 A 331 GLY ARG ALA VAL ARG MET LEU GLN ARG LEU GLU GLU GLN SEQRES 4 A 331 CYS VAL ASP PRO ARG LEU SER VAL SER PRO PRO SER LEU SEQRES 5 A 331 ARG ASP LEU LEU PRO ARG THR ALA GLN LEU LEU ARG GLU SEQRES 6 A 331 VAL ALA HIS SER ARG ARG ALA ALA GLY GLY GLY GLY PRO SEQRES 7 A 331 GLY GLY PRO GLY GLY SER GLY ASP PHE LEU LEU ILE TYR SEQRES 8 A 331 LEU ALA ASN LEU GLU ALA LYS SER ARG GLN VAL ALA ALA SEQRES 9 A 331 LEU LEU PRO PRO ARG GLY ARG ARG SER ALA ASN ASP GLU SEQRES 10 A 331 LEU PHE ARG ALA GLY SER ARG LEU ARG ARG GLN LEU ALA SEQRES 11 A 331 LYS LEU ALA ILE ILE PHE SER HIS MET HIS ALA GLU LEU SEQRES 12 A 331 HIS ALA LEU PHE PRO GLY GLY LYS TYR CYS GLY HIS MET SEQRES 13 A 331 TYR GLN LEU THR LYS ALA PRO ALA HIS THR PHE TRP ARG SEQRES 14 A 331 GLU SER CYS GLY ALA ARG CYS VAL LEU PRO TRP ALA GLU SEQRES 15 A 331 PHE GLU SER LEU LEU GLY THR CYS HIS PRO VAL GLU PRO SEQRES 16 A 331 GLY CYS THR ALA LEU ALA LEU ARG THR THR ILE ASP LEU SEQRES 17 A 331 THR CYS SER GLY HIS VAL SER ILE PHE GLU PHE ASP VAL SEQRES 18 A 331 PHE THR ARG LEU PHE GLN PRO TRP PRO THR LEU LEU LYS SEQRES 19 A 331 ASN TRP GLN LEU LEU ALA VAL ASN HIS PRO GLY TYR MET SEQRES 20 A 331 ALA PHE LEU THR TYR ASP GLU VAL GLN GLU ARG LEU GLN SEQRES 21 A 331 ALA CYS ARG ASP LYS PRO GLY SER TYR ILE PHE ARG PRO SEQRES 22 A 331 SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY TYR VAL SEQRES 23 A 331 SER SER ASP GLY SER ILE LEU GLN THR ILE PRO ALA ASN SEQRES 24 A 331 LYS PRO LEU SER GLN VAL LEU LEU GLU GLY GLN LYS ASP SEQRES 25 A 331 GLY PHE TYR LEU TYR PRO ASP GLY LYS THR HIS ASN PRO SEQRES 26 A 331 ASP LEU THR GLU LEU GLY SEQRES 1 B 13 ARG LEU ILE GLU ASP ASN GLU PTR THR ALA ARG GLN GLY MODRES 3VRO PTR B 419 TYR O-PHOSPHOTYROSINE HET PTR B 419 16 HET CA A 401 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM CA CALCIUM ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P FORMUL 3 CA CA 2+ FORMUL 4 HOH *204(H2 O) HELIX 1 1 GLU A 13 CYS A 32 1 20 HELIX 2 2 SER A 43 ARG A 63 1 21 HELIX 3 3 GLY A 75 LEU A 98 1 24 HELIX 4 4 ARG A 116 PHE A 139 1 24 HELIX 5 5 PRO A 140 LYS A 143 5 4 HELIX 6 6 LYS A 153 GLY A 165 1 13 HELIX 7 7 TRP A 172 THR A 181 1 10 HELIX 8 8 GLY A 188 ASP A 199 1 12 HELIX 9 9 ILE A 208 PHE A 218 1 11 HELIX 10 10 PRO A 220 PRO A 222 5 3 HELIX 11 11 THR A 223 VAL A 233 1 11 HELIX 12 12 THR A 243 GLN A 252 1 10 HELIX 13 13 ALA A 253 ARG A 255 5 3 HELIX 14 14 PRO A 293 ASP A 304 1 12 SHEET 1 A 2 VAL A 169 PRO A 171 0 SHEET 2 A 2 HIS A 205 SER A 207 -1 O VAL A 206 N LEU A 170 SHEET 1 B 4 ILE A 284 THR A 287 0 SHEET 2 B 4 TRP A 273 VAL A 278 -1 N ILE A 275 O THR A 287 SHEET 3 B 4 SER A 260 PRO A 265 -1 N ARG A 264 O ALA A 274 SHEET 4 B 4 TYR A 309 PRO A 310 1 O TYR A 309 N TYR A 261 LINK C GLU B 418 N PTR B 419 1555 1555 1.33 LINK C PTR B 419 N THR B 420 1555 1555 1.31 LINK OD1 ASP A 199 CA CA A 401 1555 1555 2.34 LINK OE2 GLU A 210 CA CA A 401 1555 1555 2.36 LINK O HIS A 205 CA CA A 401 1555 1555 2.46 LINK OG1 THR A 201 CA CA A 401 1555 1555 2.48 LINK OG SER A 203 CA CA A 401 1555 1555 2.51 LINK OE1 GLU A 210 CA CA A 401 1555 1555 2.84 LINK CA CA A 401 O HOH A 502 1555 1555 2.53 CISPEP 1 PRO A 41 PRO A 42 0 -4.46 CISPEP 2 GLN A 219 PRO A 220 0 5.62 SITE 1 AC1 6 ASP A 199 THR A 201 SER A 203 HIS A 205 SITE 2 AC1 6 GLU A 210 HOH A 502 CRYST1 93.282 108.493 54.761 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018261 0.00000