HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-APR-12 3VS1 TITLE CRYSTAL STRUCTURE OF HCK COMPLEXED WITH A PYRROLO-PYRIMIDINE INHIBITOR TITLE 2 1-[4-(4-AMINO-7-CYCLOPENTYL-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)PHENYL]- TITLE 3 3-PHENYLUREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 81-526; COMPND 5 SYNONYM: HEMATOPOIETIC CELL KINASE, HEMOPOIETIC CELL KINASE, P59- COMPND 6 HCK/P60-HCK, P59HCK, P61HCK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TYROSINE KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.KURATANI,Y.TOMABECHI,M.TOYAMA,N.HANDA,S.YOKOYAMA REVDAT 3 06-DEC-23 3VS1 1 REMARK REVDAT 2 08-NOV-23 3VS1 1 REMARK SEQADV LINK REVDAT 1 01-MAY-13 3VS1 0 JRNL AUTH Y.SAITO,H.YUKI,M.KURATANI,Y.HASHIZUME,S.TAKAGI,T.HONMA, JRNL AUTH 2 A.TANAKA,M.SHIROUZU,J.MIKUNI,N.HANDA,I.OGAHARA,A.SONE, JRNL AUTH 3 Y.NAJIMA,Y.TOMABECHI,M.WAKIYAMA,N.UCHIDA, JRNL AUTH 4 M.TOMIZAWA-MURASAWA,A.KANEKO,S.TANAKA,N.SUZUKI,H.KAJITA, JRNL AUTH 5 Y.AOKI,O.OHARA,L.D.SHULTZ,T.FUKAMI,T.GOTO,S.TANIGUCHI, JRNL AUTH 6 S.YOKOYAMA,F.ISHIKAWA JRNL TITL A PYRROLO-PYRIMIDINE DERIVATIVE TARGETS HUMAN PRIMARY AML JRNL TITL 2 STEM CELLS IN VIVO JRNL REF SCI TRANSL MED V. 5 1RA52 2013 JRNL REFN ISSN 1946-6234 JRNL PMID 23596204 JRNL DOI 10.1126/SCITRANSLMED.3004387 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 45865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7060 - 6.2042 0.98 2775 147 0.2075 0.2164 REMARK 3 2 6.2042 - 4.9265 1.00 2762 145 0.2290 0.2707 REMARK 3 3 4.9265 - 4.3043 1.00 2770 146 0.1889 0.2365 REMARK 3 4 4.3043 - 3.9110 1.00 2747 144 0.2035 0.2648 REMARK 3 5 3.9110 - 3.6308 1.00 2742 144 0.2289 0.2680 REMARK 3 6 3.6308 - 3.4168 1.00 2708 142 0.2347 0.2475 REMARK 3 7 3.4168 - 3.2458 1.00 2726 144 0.2608 0.3256 REMARK 3 8 3.2458 - 3.1045 1.00 2725 144 0.2729 0.3328 REMARK 3 9 3.1045 - 2.9850 1.00 2741 144 0.2658 0.3116 REMARK 3 10 2.9850 - 2.8820 1.00 2682 141 0.2752 0.2901 REMARK 3 11 2.8820 - 2.7919 1.00 2743 144 0.3020 0.3621 REMARK 3 12 2.7919 - 2.7121 1.00 2684 141 0.3112 0.3573 REMARK 3 13 2.7121 - 2.6408 1.00 2756 145 0.3239 0.3764 REMARK 3 14 2.6408 - 2.5763 1.00 2677 142 0.3457 0.4334 REMARK 3 15 2.5763 - 2.5178 1.00 2706 142 0.3693 0.4119 REMARK 3 16 2.5178 - 2.4642 0.97 2627 139 0.3692 0.4258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 47.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 24.94280 REMARK 3 B22 (A**2) : -6.49020 REMARK 3 B33 (A**2) : -18.45260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.67760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7157 REMARK 3 ANGLE : 0.881 9673 REMARK 3 CHIRALITY : 0.060 1024 REMARK 3 PLANARITY : 0.003 1230 REMARK 3 DIHEDRAL : 15.251 2698 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000095429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46087 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.1M CALCIUM ACETATE, 20% REMARK 280 GLYCEROL, 21% PEG6000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 MET A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 ILE A 84 REMARK 465 THR A 207 REMARK 465 LEU A 208 REMARK 465 ASP A 209 REMARK 465 ASN A 210 REMARK 465 GLY A 211 REMARK 465 GLY A 212 REMARK 465 PHE A 213 REMARK 465 TYR A 214 REMARK 465 ILE A 215 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLU A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 MET B 80 REMARK 465 GLY B 81 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 ILE B 84 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLU B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 410 CG1 CG2 REMARK 470 ILE A 411 CG1 CG2 CD1 REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 410 CG1 CG2 REMARK 470 ILE B 411 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 701 O HOH A 750 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 -163.16 -103.35 REMARK 500 LYS A 182 81.97 -58.88 REMARK 500 ASP A 236 36.26 -96.81 REMARK 500 SER A 243 -78.72 -108.96 REMARK 500 LYS A 271 119.13 -160.74 REMARK 500 MET A 302 81.58 -63.54 REMARK 500 VAL A 304 -73.95 -49.71 REMARK 500 LEU A 317 40.79 -99.69 REMARK 500 SER A 352 -169.34 -71.66 REMARK 500 SER A 356 2.78 -66.56 REMARK 500 ARG A 385 -14.14 76.16 REMARK 500 PHE A 405 -49.41 95.26 REMARK 500 VAL A 410 -5.77 -148.65 REMARK 500 GLU A 485 43.05 -78.02 REMARK 500 ASN A 486 -9.05 -160.86 REMARK 500 HIS B 98 -160.89 -115.01 REMARK 500 ASP B 236 65.49 -68.74 REMARK 500 SER B 243 -90.53 -101.32 REMARK 500 ALA B 259 52.36 -111.40 REMARK 500 LYS B 288 17.11 58.33 REMARK 500 MET B 302 -161.53 -70.46 REMARK 500 ARG B 385 -41.31 77.41 REMARK 500 PHE B 405 -74.78 82.63 REMARK 500 ILE B 426 -39.60 -144.01 REMARK 500 PRO B 431 -70.42 -43.53 REMARK 500 GLU B 432 -36.82 -34.08 REMARK 500 ILE B 434 -76.87 -72.51 REMARK 500 ASN B 435 -72.40 -49.43 REMARK 500 ASN B 468 -73.14 -50.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 404 PHE B 405 31.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 490 OE2 REMARK 620 2 HOH A 750 O 72.8 REMARK 620 3 GLU B 524 O 55.7 122.2 REMARK 620 4 PTR B 527 O 60.9 94.9 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 524 O REMARK 620 2 PTR A 527 O 79.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSA B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VRY RELATED DB: PDB REMARK 900 RELATED ID: 3VRZ RELATED DB: PDB REMARK 900 RELATED ID: 3VS0 RELATED DB: PDB REMARK 900 RELATED ID: 3VS2 RELATED DB: PDB REMARK 900 RELATED ID: 3VS3 RELATED DB: PDB REMARK 900 RELATED ID: 3VS4 RELATED DB: PDB REMARK 900 RELATED ID: 3VS5 RELATED DB: PDB REMARK 900 RELATED ID: 3VS6 RELATED DB: PDB REMARK 900 RELATED ID: 3VS7 RELATED DB: PDB DBREF 3VS1 A 86 531 UNP P08631 HCK_HUMAN 81 526 DBREF 3VS1 B 86 531 UNP P08631 HCK_HUMAN 81 526 SEQADV 3VS1 GLY A 78 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ALA A 79 UNP P08631 EXPRESSION TAG SEQADV 3VS1 MET A 80 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLY A 81 UNP P08631 EXPRESSION TAG SEQADV 3VS1 SER A 82 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLY A 83 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ILE A 84 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ARG A 85 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VS1 GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VS1 ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQADV 3VS1 GLY B 78 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ALA B 79 UNP P08631 EXPRESSION TAG SEQADV 3VS1 MET B 80 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLY B 81 UNP P08631 EXPRESSION TAG SEQADV 3VS1 SER B 82 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLY B 83 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ILE B 84 UNP P08631 EXPRESSION TAG SEQADV 3VS1 ARG B 85 UNP P08631 EXPRESSION TAG SEQADV 3VS1 GLU B 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VS1 GLU B 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VS1 ILE B 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQRES 1 A 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO SEQRES 1 B 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 B 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 B 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 B 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 B 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 B 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 B 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 B 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 B 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 B 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 B 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 B 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 B 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 B 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 B 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 B 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 B 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 B 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 B 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 B 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 B 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 B 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 B 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 B 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 B 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 B 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 B 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 B 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 B 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 B 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 B 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 B 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 B 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 B 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 B 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO MODRES 3VS1 PTR A 527 TYR O-PHOSPHOTYROSINE MODRES 3VS1 PTR B 527 TYR O-PHOSPHOTYROSINE HET PTR A 527 16 HET PTR B 527 16 HET CA A 601 1 HET CL A 603 1 HET VSA A 602 31 HET CA B 601 1 HET CL B 603 1 HET VSA B 602 31 HETNAM PTR O-PHOSPHOTYROSINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM VSA 1-[4-(4-AMINO-7-CYCLOPENTYL-7H-PYRROLO[2,3-D]PYRIMIDIN- HETNAM 2 VSA 5-YL)PHENYL]-3-PHENYLUREA HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 VSA 2(C24 H24 N6 O) FORMUL 9 HOH *81(H2 O) HELIX 1 1 SER A 143 GLU A 147 5 5 HELIX 2 2 SER A 155 ALA A 165 1 11 HELIX 3 3 THR A 223 LYS A 232 1 10 HELIX 4 4 PRO A 263 GLU A 265 5 3 HELIX 5 5 SER A 303 LYS A 315 1 13 HELIX 6 6 SER A 345 SER A 352 1 8 HELIX 7 7 GLU A 354 GLN A 358 5 5 HELIX 8 8 PRO A 359 ARG A 380 1 22 HELIX 9 9 ARG A 388 ALA A 390 5 3 HELIX 10 10 PHE A 405 VAL A 410 5 6 HELIX 11 11 PRO A 425 THR A 429 5 5 HELIX 12 12 ALA A 430 PHE A 436 1 7 HELIX 13 13 THR A 440 THR A 457 1 18 HELIX 14 14 SER A 467 GLY A 478 1 12 HELIX 15 15 PRO A 488 TRP A 499 1 12 HELIX 16 16 ARG A 502 ARG A 506 5 5 HELIX 17 17 THR A 508 ASP A 518 1 11 HELIX 18 18 ALA A 522 GLN A 526 5 5 HELIX 19 19 SER B 143 GLU B 147 5 5 HELIX 20 20 SER B 155 LEU B 164 1 10 HELIX 21 21 THR B 223 LYS B 233 1 11 HELIX 22 22 PRO B 263 GLU B 265 5 3 HELIX 23 23 GLU B 305 VAL B 313 1 9 HELIX 24 24 SER B 345 LYS B 351 1 7 HELIX 25 25 ASP B 353 LYS B 357 5 5 HELIX 26 26 PRO B 359 ARG B 380 1 22 HELIX 27 27 ARG B 388 ALA B 390 5 3 HELIX 28 28 PHE B 405 ARG B 409 5 5 HELIX 29 29 ALA B 430 ASN B 435 1 6 HELIX 30 30 THR B 440 THR B 457 1 18 HELIX 31 31 SER B 467 LEU B 475 1 9 HELIX 32 32 PRO B 488 TRP B 499 1 12 HELIX 33 33 ARG B 502 ARG B 506 5 5 HELIX 34 34 THR B 508 ASP B 518 1 11 HELIX 35 35 ALA B 522 GLN B 526 5 5 SHEET 1 A 5 GLU A 130 PRO A 134 0 SHEET 2 A 5 TRP A 119 SER A 124 -1 N ALA A 122 O GLY A 131 SHEET 3 A 5 GLN A 109 GLU A 115 -1 N LEU A 113 O LYS A 121 SHEET 4 A 5 ILE A 87 ALA A 90 -1 N VAL A 88 O MET A 110 SHEET 5 A 5 VAL A 138 ARG A 140 -1 O ALA A 139 N VAL A 89 SHEET 1 B 4 PHE A 150 PHE A 151 0 SHEET 2 B 4 PHE A 173 ASP A 177 1 O ILE A 175 N PHE A 151 SHEET 3 B 4 TYR A 185 TYR A 192 -1 O SER A 186 N ARG A 176 SHEET 4 B 4 ASP A 198 LYS A 204 -1 O TYR A 203 N LEU A 187 SHEET 1 C 5 LEU A 267 ALA A 275 0 SHEET 2 C 5 GLY A 279 TYR A 286 -1 O MET A 283 N LYS A 271 SHEET 3 C 5 THR A 290 MET A 297 -1 O THR A 290 N TYR A 286 SHEET 4 C 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295 SHEET 5 C 5 LEU A 325 VAL A 329 -1 N HIS A 326 O ILE A 337 SHEET 1 D 2 ILE A 392 VAL A 394 0 SHEET 2 D 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 E 3 GLN B 109 VAL B 111 0 SHEET 2 E 3 ILE B 87 ALA B 90 -1 N VAL B 88 O MET B 110 SHEET 3 E 3 VAL B 138 ARG B 140 -1 O ALA B 139 N VAL B 89 SHEET 1 F 3 GLU B 114 GLU B 115 0 SHEET 2 F 3 TRP B 119 ARG B 123 -1 O LYS B 121 N GLU B 114 SHEET 3 F 3 GLU B 130 PRO B 134 -1 O GLY B 131 N ALA B 122 SHEET 1 G 5 PHE B 150 PHE B 151 0 SHEET 2 G 5 PHE B 173 ASP B 177 1 O ILE B 175 N PHE B 151 SHEET 3 G 5 TYR B 185 ASP B 193 -1 O SER B 188 N MET B 174 SHEET 4 G 5 GLY B 197 THR B 207 -1 O THR B 199 N ASP B 191 SHEET 5 G 5 PHE B 213 TYR B 214 -1 O TYR B 214 N ARG B 206 SHEET 1 H 5 LEU B 267 ALA B 275 0 SHEET 2 H 5 GLU B 280 TYR B 286 -1 O VAL B 281 N LEU B 273 SHEET 3 H 5 THR B 290 MET B 297 -1 O VAL B 294 N TRP B 282 SHEET 4 H 5 ILE B 334 GLU B 339 -1 O THR B 338 N ALA B 293 SHEET 5 H 5 LEU B 325 VAL B 329 -1 N HIS B 326 O ILE B 337 SHEET 1 I 2 ILE B 392 VAL B 394 0 SHEET 2 I 2 CYS B 400 ILE B 402 -1 O LYS B 401 N LEU B 393 LINK C GLN A 526 N PTR A 527 1555 1555 1.33 LINK C PTR A 527 N GLU A 528 1555 1555 1.33 LINK C GLN B 526 N PTR B 527 1555 1555 1.33 LINK C PTR B 527 N GLU B 528 1555 1555 1.32 LINK OE2 GLU A 490 CA CA B 601 1555 1555 3.18 LINK O GLU A 524 CA CA A 601 1555 1555 3.11 LINK O PTR A 527 CA CA A 601 1555 1555 3.02 LINK O HOH A 750 CA CA B 601 1555 1555 3.09 LINK O GLU B 524 CA CA B 601 1555 1555 2.92 LINK O PTR B 527 CA CA B 601 1555 1555 2.94 CISPEP 1 GLU A 332 PRO A 333 0 -0.79 CISPEP 2 ASP A 404 PHE A 405 0 25.64 CISPEP 3 ASN B 210 GLY B 211 0 1.55 CISPEP 4 GLU B 332 PRO B 333 0 0.93 SITE 1 AC1 4 GLU A 524 PTR A 527 GLU A 529 GLU B 490 SITE 1 AC2 3 ARG A 85 ARG A 123 ARG A 128 SITE 1 AC3 10 LEU A 273 VAL A 281 ALA A 293 LEU A 325 SITE 2 AC3 10 ILE A 336 THR A 338 GLU A 339 MET A 341 SITE 3 AC3 10 LEU A 393 ASP A 404 SITE 1 AC4 5 GLU A 490 HOH A 750 GLU B 524 PTR B 527 SITE 2 AC4 5 GLU B 529 SITE 1 AC5 3 ARG B 85 ARG B 123 ARG B 128 SITE 1 AC6 13 VAL B 281 ALA B 293 LYS B 295 LEU B 325 SITE 2 AC6 13 ILE B 336 THR B 338 GLU B 339 PHE B 340 SITE 3 AC6 13 MET B 341 SER B 345 LEU B 393 ASP B 404 SITE 4 AC6 13 HOH B 701 CRYST1 49.030 73.270 179.850 90.00 96.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020396 0.000000 0.002219 0.00000 SCALE2 0.000000 0.013648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005593 0.00000