HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 25-APR-12 3VSI TITLE CRYSTAL STRUCTURE OF NATIVE 1,6-APD (2-ANIMOPHENOL-1,6-DIOXYGENASE) TITLE 2 COMPLEX WITH 4-NITROCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-AMINO-5-CHLOROPHENOL 1,6-DIOXYGENASE ALPHA SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 EC: 1.13.11.8; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 2-AMINO-5-CHLOROPHENOL 1,6-DIOXYGENASE BETA SUBUNIT; COMPND 7 CHAIN: B, D; COMPND 8 EC: 1.13.11.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI; SOURCE 3 ORGANISM_TAXID: 543891; SOURCE 4 STRAIN: CNB-1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI; SOURCE 7 ORGANISM_TAXID: 543891; SOURCE 8 STRAIN: CNB-1 KEYWDS EXTRADIOL DIOXYGENASE, CNBC, 2-HIS-1-CARBOXYLATE FACIAL TRIAD MOTIF, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.F.LI,Y.J.HOU,Y.HU,D.C.WANG,W.LIU REVDAT 2 08-NOV-23 3VSI 1 REMARK LINK REVDAT 1 16-JAN-13 3VSI 0 JRNL AUTH D.F.LI,J.Y.ZHANG,Y.J.HOU,L.LIU,Y.HU,S.J.LIU,D.C.WANG,W.LIU JRNL TITL STRUCTURES OF AMINOPHENOL DIOXYGENASE IN COMPLEX WITH JRNL TITL 2 INTERMEDIATE, PRODUCT AND INHIBITOR JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 32 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23275161 JRNL DOI 10.1107/S0907444912042072 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 40240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9153 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12444 ; 1.089 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1139 ; 5.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 408 ;37.586 ;23.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1471 ;17.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;13.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1346 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7056 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000095445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 69.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : 0.33600 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3VSG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M SODIUM CHLORIDE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 136.36500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 136.36500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS B 305 REMARK 465 GLN B 306 REMARK 465 ARG B 307 REMARK 465 SER B 308 REMARK 465 ALA B 309 REMARK 465 ALA B 310 REMARK 465 VAL B 311 REMARK 465 ALA B 312 REMARK 465 MET C 1 REMARK 465 GLY D 300 REMARK 465 ALA D 301 REMARK 465 ALA D 302 REMARK 465 ASP D 303 REMARK 465 GLN D 304 REMARK 465 LYS D 305 REMARK 465 GLN D 306 REMARK 465 ARG D 307 REMARK 465 SER D 308 REMARK 465 ALA D 309 REMARK 465 ALA D 310 REMARK 465 VAL D 311 REMARK 465 ALA D 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 38 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 -96.12 -73.47 REMARK 500 ASP A 85 88.95 -151.71 REMARK 500 PHE A 135 71.08 -111.33 REMARK 500 LEU A 177 -119.54 -100.78 REMARK 500 ARG A 229 51.31 39.12 REMARK 500 ASP A 231 103.29 -33.64 REMARK 500 GLN B 31 44.85 -109.63 REMARK 500 TRP B 34 46.20 39.41 REMARK 500 SER B 95 110.34 -160.23 REMARK 500 ARG B 139 76.68 -160.67 REMARK 500 ASN B 153 -34.96 -31.28 REMARK 500 SER B 154 -56.17 -25.35 REMARK 500 LEU B 158 -86.70 -88.61 REMARK 500 LEU B 193 -129.16 -94.81 REMARK 500 HIS B 197 164.82 48.19 REMARK 500 GLU B 200 116.57 -161.32 REMARK 500 ASP B 207 99.86 -57.54 REMARK 500 GLU B 268 47.56 -75.73 REMARK 500 LYS B 293 10.03 -61.74 REMARK 500 LEU C 177 -114.78 -94.41 REMARK 500 ASP C 231 102.68 -38.68 REMARK 500 SER C 249 -82.10 -68.55 REMARK 500 PHE D 86 54.68 -118.82 REMARK 500 ARG D 139 74.68 -164.23 REMARK 500 LEU D 158 -83.90 -85.19 REMARK 500 LEU D 193 -130.26 -100.41 REMARK 500 ASP D 207 96.91 -59.24 REMARK 500 LYS D 233 55.22 -92.06 REMARK 500 GLN D 265 41.64 81.58 REMARK 500 GLU D 268 43.90 -80.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 13 NE2 REMARK 620 2 HIS B 62 NE2 91.0 REMARK 620 3 GLU B 251 OE2 95.4 107.8 REMARK 620 4 4NC B 402 O8 89.0 93.2 158.4 REMARK 620 5 4NC B 402 O7 94.1 172.3 77.4 81.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 13 NE2 REMARK 620 2 HIS D 62 NE2 89.6 REMARK 620 3 GLU D 251 OE2 123.2 96.8 REMARK 620 4 GLU D 251 OE1 76.2 123.1 53.3 REMARK 620 5 4NC D 402 O8 92.2 82.7 144.7 150.9 REMARK 620 6 4NC D 402 O7 100.4 161.9 90.4 74.3 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NC D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VSG RELATED DB: PDB REMARK 900 RELATED ID: 3VSH RELATED DB: PDB REMARK 900 RELATED ID: 3VSJ RELATED DB: PDB DBREF 3VSI A 1 271 UNP Q38M40 Q38M40_COMTE 1 271 DBREF 3VSI B 1 312 UNP Q38M41 Q38M41_COMTE 1 312 DBREF 3VSI C 1 271 UNP Q38M40 Q38M40_COMTE 1 271 DBREF 3VSI D 1 312 UNP Q38M41 Q38M41_COMTE 1 312 SEQRES 1 A 271 MET THR VAL VAL SER ALA PHE LEU VAL PRO GLY THR PRO SEQRES 2 A 271 LEU PRO GLN LEU LYS PRO GLU VAL PRO SER TRP GLY GLN SEQRES 3 A 271 LEU ALA ALA ALA THR GLU ARG ALA GLY LYS ALA LEU ALA SEQRES 4 A 271 ALA SER ARG PRO ASP VAL VAL LEU VAL TYR SER THR GLN SEQRES 5 A 271 TRP LEU ALA VAL LEU ASP GLN GLN TRP LEU THR ARG PRO SEQRES 6 A 271 ARG SER GLU GLY VAL HIS VAL ASP GLU ASN TRP TYR GLU SEQRES 7 A 271 PHE GLY ASP LEU ALA TYR ASP ILE ARG ALA ASP THR ALA SEQRES 8 A 271 LEU ALA GLU ALA CYS VAL THR SER SER PRO LEU HIS GLY SEQRES 9 A 271 VAL HIS ALA ARG GLY VAL ASN TYR ASP GLY PHE PRO ILE SEQRES 10 A 271 ASP THR GLY THR ILE THR ALA CYS THR LEU MET GLY ILE SEQRES 11 A 271 GLY THR ASP ALA PHE PRO LEU VAL VAL GLY SER ASN ASN SEQRES 12 A 271 LEU TYR HIS SER GLY GLU ILE THR GLU LYS LEU ALA ALA SEQRES 13 A 271 LEU ALA VAL ASP CYS ALA LYS ASP GLN ASN LYS ARG VAL SEQRES 14 A 271 ALA VAL VAL GLY VAL GLY GLY LEU SER GLY SER LEU PHE SEQRES 15 A 271 ARG GLU GLU ILE ASP PRO ARG GLU ASP ARG ILE ALA ASN SEQRES 16 A 271 GLU GLU ASP ASP LYS TRP ASN ARG ARG VAL LEU LYS LEU SEQRES 17 A 271 ILE GLU ALA GLY ASP VAL SER ALA LEU ARG GLU ALA MET SEQRES 18 A 271 PRO VAL TYR ALA LYS GLU ALA ARG VAL ASP MET GLY PHE SEQRES 19 A 271 LYS HIS LEU HIS TRP ILE LEU GLY ALA LEU LYS GLY LYS SEQRES 20 A 271 PHE SER GLY ALA ASN VAL LEU GLY TYR GLY PRO SER TYR SEQRES 21 A 271 GLY SER GLY ALA ALA VAL ILE GLU PHE ARG LEU SEQRES 1 B 312 MET GLN GLY GLU ILE ILE ALA GLY PHE LEU ALA PRO HIS SEQRES 2 B 312 PRO PRO HIS LEU VAL TYR GLY GLU ASN PRO PRO GLN ASN SEQRES 3 B 312 GLU PRO ARG SER GLN GLY GLY TRP GLU VAL LEU ARG TRP SEQRES 4 B 312 ALA TYR GLU ARG ALA ARG GLU ARG LEU ASP ALA MET LYS SEQRES 5 B 312 PRO ASP VAL LEU LEU VAL HIS SER PRO HIS TRP ILE THR SEQRES 6 B 312 SER VAL GLY HIS HIS PHE LEU GLY VAL PRO GLU LEU SER SEQRES 7 B 312 GLY LYS SER VAL ASP PRO ILE PHE PRO ASN VAL PHE ARG SEQRES 8 B 312 TYR ASP PHE SER LEU ASN VAL ASP VAL GLU LEU ALA GLU SEQRES 9 B 312 ALA CYS ALA GLU GLU GLY ARG LYS ALA GLY LEU VAL THR SEQRES 10 B 312 LYS MET MET ARG ASN PRO LYS PHE ARG VAL ASP TYR GLY SEQRES 11 B 312 THR ILE THR THR LEU HIS LEU ILE ARG PRO GLN TRP ASP SEQRES 12 B 312 ILE PRO VAL VAL GLY ILE SER ALA ASN ASN SER PRO TYR SEQRES 13 B 312 TYR LEU ASN THR LYS GLU GLY MET SER GLU MET ASP VAL SEQRES 14 B 312 LEU GLY LYS ALA THR ARG GLU ALA ILE ARG LYS THR GLY SEQRES 15 B 312 ARG LYS ALA VAL LEU LEU ALA SER ASN THR LEU SER HIS SEQRES 16 B 312 TRP HIS PHE HIS GLU GLU PRO THR ILE PRO GLU ASP MET SEQRES 17 B 312 SER LYS GLU TYR PRO ALA THR MET ALA GLY TYR GLN TRP SEQRES 18 B 312 ASP ILE ARG MET ILE GLU LEU MET ARG GLN GLY LYS THR SEQRES 19 B 312 SER GLU VAL PHE LYS LEU LEU PRO GLN PHE ILE ASP GLU SEQRES 20 B 312 ALA PHE ALA GLU VAL LYS SER GLY ALA PHE THR TRP MET SEQRES 21 B 312 HIS ALA ALA MET GLN TYR PRO GLU LEU ALA ALA GLU LEU SEQRES 22 B 312 PHE GLY TYR GLY THR VAL ILE GLY THR GLY ASN ALA VAL SEQRES 23 B 312 MET GLU TRP ASP LEU ARG LYS ALA GLY LEU SER MET LEU SEQRES 24 B 312 GLY ALA ALA ASP GLN LYS GLN ARG SER ALA ALA VAL ALA SEQRES 1 C 271 MET THR VAL VAL SER ALA PHE LEU VAL PRO GLY THR PRO SEQRES 2 C 271 LEU PRO GLN LEU LYS PRO GLU VAL PRO SER TRP GLY GLN SEQRES 3 C 271 LEU ALA ALA ALA THR GLU ARG ALA GLY LYS ALA LEU ALA SEQRES 4 C 271 ALA SER ARG PRO ASP VAL VAL LEU VAL TYR SER THR GLN SEQRES 5 C 271 TRP LEU ALA VAL LEU ASP GLN GLN TRP LEU THR ARG PRO SEQRES 6 C 271 ARG SER GLU GLY VAL HIS VAL ASP GLU ASN TRP TYR GLU SEQRES 7 C 271 PHE GLY ASP LEU ALA TYR ASP ILE ARG ALA ASP THR ALA SEQRES 8 C 271 LEU ALA GLU ALA CYS VAL THR SER SER PRO LEU HIS GLY SEQRES 9 C 271 VAL HIS ALA ARG GLY VAL ASN TYR ASP GLY PHE PRO ILE SEQRES 10 C 271 ASP THR GLY THR ILE THR ALA CYS THR LEU MET GLY ILE SEQRES 11 C 271 GLY THR ASP ALA PHE PRO LEU VAL VAL GLY SER ASN ASN SEQRES 12 C 271 LEU TYR HIS SER GLY GLU ILE THR GLU LYS LEU ALA ALA SEQRES 13 C 271 LEU ALA VAL ASP CYS ALA LYS ASP GLN ASN LYS ARG VAL SEQRES 14 C 271 ALA VAL VAL GLY VAL GLY GLY LEU SER GLY SER LEU PHE SEQRES 15 C 271 ARG GLU GLU ILE ASP PRO ARG GLU ASP ARG ILE ALA ASN SEQRES 16 C 271 GLU GLU ASP ASP LYS TRP ASN ARG ARG VAL LEU LYS LEU SEQRES 17 C 271 ILE GLU ALA GLY ASP VAL SER ALA LEU ARG GLU ALA MET SEQRES 18 C 271 PRO VAL TYR ALA LYS GLU ALA ARG VAL ASP MET GLY PHE SEQRES 19 C 271 LYS HIS LEU HIS TRP ILE LEU GLY ALA LEU LYS GLY LYS SEQRES 20 C 271 PHE SER GLY ALA ASN VAL LEU GLY TYR GLY PRO SER TYR SEQRES 21 C 271 GLY SER GLY ALA ALA VAL ILE GLU PHE ARG LEU SEQRES 1 D 312 MET GLN GLY GLU ILE ILE ALA GLY PHE LEU ALA PRO HIS SEQRES 2 D 312 PRO PRO HIS LEU VAL TYR GLY GLU ASN PRO PRO GLN ASN SEQRES 3 D 312 GLU PRO ARG SER GLN GLY GLY TRP GLU VAL LEU ARG TRP SEQRES 4 D 312 ALA TYR GLU ARG ALA ARG GLU ARG LEU ASP ALA MET LYS SEQRES 5 D 312 PRO ASP VAL LEU LEU VAL HIS SER PRO HIS TRP ILE THR SEQRES 6 D 312 SER VAL GLY HIS HIS PHE LEU GLY VAL PRO GLU LEU SER SEQRES 7 D 312 GLY LYS SER VAL ASP PRO ILE PHE PRO ASN VAL PHE ARG SEQRES 8 D 312 TYR ASP PHE SER LEU ASN VAL ASP VAL GLU LEU ALA GLU SEQRES 9 D 312 ALA CYS ALA GLU GLU GLY ARG LYS ALA GLY LEU VAL THR SEQRES 10 D 312 LYS MET MET ARG ASN PRO LYS PHE ARG VAL ASP TYR GLY SEQRES 11 D 312 THR ILE THR THR LEU HIS LEU ILE ARG PRO GLN TRP ASP SEQRES 12 D 312 ILE PRO VAL VAL GLY ILE SER ALA ASN ASN SER PRO TYR SEQRES 13 D 312 TYR LEU ASN THR LYS GLU GLY MET SER GLU MET ASP VAL SEQRES 14 D 312 LEU GLY LYS ALA THR ARG GLU ALA ILE ARG LYS THR GLY SEQRES 15 D 312 ARG LYS ALA VAL LEU LEU ALA SER ASN THR LEU SER HIS SEQRES 16 D 312 TRP HIS PHE HIS GLU GLU PRO THR ILE PRO GLU ASP MET SEQRES 17 D 312 SER LYS GLU TYR PRO ALA THR MET ALA GLY TYR GLN TRP SEQRES 18 D 312 ASP ILE ARG MET ILE GLU LEU MET ARG GLN GLY LYS THR SEQRES 19 D 312 SER GLU VAL PHE LYS LEU LEU PRO GLN PHE ILE ASP GLU SEQRES 20 D 312 ALA PHE ALA GLU VAL LYS SER GLY ALA PHE THR TRP MET SEQRES 21 D 312 HIS ALA ALA MET GLN TYR PRO GLU LEU ALA ALA GLU LEU SEQRES 22 D 312 PHE GLY TYR GLY THR VAL ILE GLY THR GLY ASN ALA VAL SEQRES 23 D 312 MET GLU TRP ASP LEU ARG LYS ALA GLY LEU SER MET LEU SEQRES 24 D 312 GLY ALA ALA ASP GLN LYS GLN ARG SER ALA ALA VAL ALA HET FE B 401 1 HET 4NC B 402 11 HET FE D 401 1 HET 4NC D 402 11 HETNAM FE FE (III) ION HETNAM 4NC 4-NITROCATECHOL FORMUL 5 FE 2(FE 3+) FORMUL 6 4NC 2(C6 H5 N O4) FORMUL 9 HOH *271(H2 O) HELIX 1 1 PRO A 13 LYS A 18 1 6 HELIX 2 2 VAL A 21 SER A 41 1 21 HELIX 3 3 TRP A 76 GLY A 80 5 5 HELIX 4 4 ASP A 89 SER A 100 1 12 HELIX 5 5 PRO A 101 GLY A 104 5 4 HELIX 6 6 ASP A 118 GLY A 129 1 12 HELIX 7 7 SER A 147 ASP A 164 1 18 HELIX 8 8 ASP A 187 ASP A 191 5 5 HELIX 9 9 ASN A 195 GLY A 212 1 18 HELIX 10 10 ASP A 213 ALA A 228 1 16 HELIX 11 11 VAL A 230 GLY A 233 5 4 HELIX 12 12 PHE A 234 LEU A 244 1 11 HELIX 13 13 PRO B 15 GLY B 20 1 6 HELIX 14 14 TRP B 34 ALA B 50 1 17 HELIX 15 15 ASP B 99 ALA B 113 1 15 HELIX 16 16 ASP B 128 ARG B 139 1 12 HELIX 17 17 ASN B 153 LEU B 158 1 6 HELIX 18 18 ASN B 159 GLY B 182 1 24 HELIX 19 19 ASP B 207 GLU B 211 5 5 HELIX 20 20 THR B 215 GLN B 231 1 17 HELIX 21 21 LYS B 233 PHE B 249 1 17 HELIX 22 22 ALA B 250 SER B 254 5 5 HELIX 23 23 GLY B 255 MET B 264 1 10 HELIX 24 24 PRO C 13 LYS C 18 1 6 HELIX 25 25 VAL C 21 SER C 41 1 21 HELIX 26 26 ASP C 89 SER C 100 1 12 HELIX 27 27 PRO C 101 HIS C 103 5 3 HELIX 28 28 ASP C 118 GLY C 129 1 12 HELIX 29 29 SER C 147 ASP C 164 1 18 HELIX 30 30 ASP C 187 ASP C 191 5 5 HELIX 31 31 GLU C 196 GLY C 212 1 17 HELIX 32 32 ASP C 213 ALA C 228 1 16 HELIX 33 33 VAL C 230 GLY C 233 5 4 HELIX 34 34 PHE C 234 LEU C 244 1 11 HELIX 35 35 PRO D 15 ASN D 22 1 8 HELIX 36 36 TRP D 34 ALA D 50 1 17 HELIX 37 37 ASP D 99 ALA D 113 1 15 HELIX 38 38 ASP D 128 ARG D 139 1 12 HELIX 39 39 ASN D 153 LEU D 158 1 6 HELIX 40 40 ASN D 159 GLY D 182 1 24 HELIX 41 41 ASP D 207 GLU D 211 5 5 HELIX 42 42 THR D 215 ARG D 230 1 16 HELIX 43 43 LYS D 233 PHE D 249 1 17 HELIX 44 44 ALA D 250 SER D 254 5 5 HELIX 45 45 GLY D 255 GLN D 265 1 11 SHEET 1 A 6 LEU A 137 ASN A 143 0 SHEET 2 A 6 VAL A 45 ALA A 55 1 N TRP A 53 O ASN A 142 SHEET 3 A 6 VAL A 169 VAL A 174 1 O VAL A 174 N TYR A 49 SHEET 4 A 6 VAL A 3 VAL A 9 1 N VAL A 4 O VAL A 169 SHEET 5 A 6 SER A 262 ARG A 270 -1 O ILE A 267 N LEU A 8 SHEET 6 A 6 GLY A 250 SER A 259 -1 N ASN A 252 O GLU A 268 SHEET 1 B 2 GLN A 59 LEU A 62 0 SHEET 2 B 2 ALA A 107 VAL A 110 1 O ARG A 108 N GLN A 59 SHEET 1 C 2 ARG A 66 HIS A 71 0 SHEET 2 C 2 LEU A 82 ARG A 87 -1 O LEU A 82 N HIS A 71 SHEET 1 D 6 VAL B 146 ASN B 152 0 SHEET 2 D 6 VAL B 55 THR B 65 1 N VAL B 58 O ILE B 149 SHEET 3 D 6 LYS B 184 ALA B 189 1 O LEU B 188 N LEU B 57 SHEET 4 D 6 GLN B 2 LEU B 10 1 N GLU B 4 O ALA B 185 SHEET 5 D 6 THR B 282 ASP B 290 -1 O MET B 287 N LEU B 10 SHEET 6 D 6 GLU B 272 VAL B 279 -1 N PHE B 274 O VAL B 286 SHEET 1 E 5 VAL B 146 ASN B 152 0 SHEET 2 E 5 VAL B 55 THR B 65 1 N VAL B 58 O ILE B 149 SHEET 3 E 5 LYS B 184 ALA B 189 1 O LEU B 188 N LEU B 57 SHEET 4 E 5 GLN B 2 LEU B 10 1 N GLU B 4 O ALA B 185 SHEET 5 E 5 MET B 298 ALA B 301 -1 O LEU B 299 N GLY B 3 SHEET 1 F 2 HIS B 69 LEU B 72 0 SHEET 2 F 2 THR B 117 MET B 120 1 O MET B 120 N PHE B 71 SHEET 1 G 2 GLU B 76 VAL B 82 0 SHEET 2 G 2 ARG B 91 ASN B 97 -1 O LEU B 96 N LEU B 77 SHEET 1 H 6 LEU C 137 ASN C 143 0 SHEET 2 H 6 VAL C 45 ALA C 55 1 N TRP C 53 O ASN C 142 SHEET 3 H 6 VAL C 169 VAL C 174 1 O VAL C 174 N TYR C 49 SHEET 4 H 6 VAL C 3 VAL C 9 1 N VAL C 4 O VAL C 169 SHEET 5 H 6 SER C 262 ARG C 270 -1 O ILE C 267 N LEU C 8 SHEET 6 H 6 GLY C 250 SER C 259 -1 N ASN C 252 O GLU C 268 SHEET 1 I 2 GLN C 59 LEU C 62 0 SHEET 2 I 2 ALA C 107 VAL C 110 1 O VAL C 110 N TRP C 61 SHEET 1 J 2 ARG C 66 HIS C 71 0 SHEET 2 J 2 LEU C 82 ARG C 87 -1 O ILE C 86 N SER C 67 SHEET 1 K 6 VAL D 146 ASN D 152 0 SHEET 2 K 6 VAL D 55 THR D 65 1 N VAL D 58 O ILE D 149 SHEET 3 K 6 LYS D 184 ALA D 189 1 O VAL D 186 N LEU D 57 SHEET 4 K 6 GLU D 4 LEU D 10 1 N GLU D 4 O ALA D 185 SHEET 5 K 6 THR D 282 ASP D 290 -1 O TRP D 289 N GLY D 8 SHEET 6 K 6 GLU D 272 VAL D 279 -1 N PHE D 274 O VAL D 286 SHEET 1 L 2 HIS D 69 LEU D 72 0 SHEET 2 L 2 THR D 117 MET D 120 1 O MET D 120 N PHE D 71 SHEET 1 M 2 GLU D 76 VAL D 82 0 SHEET 2 M 2 ARG D 91 ASN D 97 -1 O TYR D 92 N SER D 81 LINK NE2 HIS B 13 FE FE B 401 1555 1555 2.11 LINK NE2 HIS B 62 FE FE B 401 1555 1555 2.05 LINK OE2 GLU B 251 FE FE B 401 1555 1555 1.84 LINK FE FE B 401 O8 4NC B 402 1555 1555 1.88 LINK FE FE B 401 O7 4NC B 402 1555 1555 2.40 LINK NE2 HIS D 13 FE FE D 401 1555 1555 2.14 LINK NE2 HIS D 62 FE FE D 401 1555 1555 2.27 LINK OE2 GLU D 251 FE FE D 401 1555 1555 2.02 LINK OE1 GLU D 251 FE FE D 401 1555 1555 2.68 LINK FE FE D 401 O8 4NC D 402 1555 1555 2.07 LINK FE FE D 401 O7 4NC D 402 1555 1555 2.28 SITE 1 AC1 4 HIS B 13 HIS B 62 GLU B 251 4NC B 402 SITE 1 AC2 14 HIS B 13 PRO B 14 PRO B 15 HIS B 16 SITE 2 AC2 14 HIS B 62 PHE B 86 TYR B 129 THR B 192 SITE 3 AC2 14 HIS B 195 GLU B 251 VAL B 279 ILE B 280 SITE 4 AC2 14 THR B 282 FE B 401 SITE 1 AC3 4 HIS D 13 HIS D 62 GLU D 251 4NC D 402 SITE 1 AC4 13 HIS D 13 PRO D 15 HIS D 16 HIS D 62 SITE 2 AC4 13 PHE D 86 TYR D 129 THR D 192 HIS D 195 SITE 3 AC4 13 GLU D 251 VAL D 279 ILE D 280 THR D 282 SITE 4 AC4 13 FE D 401 CRYST1 272.730 48.260 108.120 90.00 109.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003667 0.000000 0.001306 0.00000 SCALE2 0.000000 0.020721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009818 0.00000