HEADER HYDROLASE 23-MAY-12 3VTA TITLE CRYSTAL STRUCTURE OF CUCUMISIN, A SUBTILISIN-LIKE ENDOPROTEASE FROM TITLE 2 CUCUMIS MELO L COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUCUMISIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUCUMIS MELO; SOURCE 3 ORGANISM_COMMON: ORIENTAL MELON; SOURCE 4 ORGANISM_TAXID: 3656 KEYWDS SUBTILISIN-LIKE FOLD, SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAYAMA,M.KATO-MURAYAMA,T.HOSAKA,A.SOTOKAWAUCHI,M.SHIROUZU, AUTHOR 2 K.ARIMA,S.YOKOYAMA REVDAT 3 29-JUL-20 3VTA 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 24-JUL-13 3VTA 1 JRNL REVDAT 1 08-AUG-12 3VTA 0 JRNL AUTH K.MURAYAMA,M.KATO-MURAYAMA,T.HOSAKA,A.SOTOKAWAUCHI, JRNL AUTH 2 S.YOKOYAMA,K.ARIMA,M.SHIROUZU JRNL TITL CRYSTAL STRUCTURE OF CUCUMISIN, A SUBTILISIN-LIKE JRNL TITL 2 ENDOPROTEASE FROM CUCUMIS MELO L JRNL REF J.MOL.BIOL. V. 423 386 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22841692 JRNL DOI 10.1016/J.JMB.2012.07.013 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3821641.130 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2331 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7183 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 335 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.89000 REMARK 3 B22 (A**2) : 5.89000 REMARK 3 B33 (A**2) : -11.77000 REMARK 3 B12 (A**2) : 11.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.430 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.850 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 32.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-10; 18-MAY-09; 25-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 110; NULL; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; PHOTON FACTORY; PHOTON REMARK 200 FACTORY REMARK 200 BEAMLINE : BL32XU; AR-NW12A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.06978, 1.07195, 1.05375; REMARK 200 1.0 REMARK 200 MONOCHROMATOR : SI 111; SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE; ADSC QUANTUM REMARK 200 210; ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15800 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE, 0.8M SODIUM ACETATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.74150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.15203 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.67833 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 74.74150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.15203 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.67833 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 74.74150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.15203 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.67833 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.30405 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 145.35667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 86.30405 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 145.35667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 86.30405 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 145.35667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 599 REMARK 465 PHE A 600 REMARK 465 LEU A 601 REMARK 465 CYS A 602 REMARK 465 GLY A 603 REMARK 465 GLN A 604 REMARK 465 GLY A 605 REMARK 465 TYR A 606 REMARK 465 ASN A 607 REMARK 465 THR A 608 REMARK 465 GLN A 609 REMARK 465 ALA A 610 REMARK 465 VAL A 611 REMARK 465 ARG A 612 REMARK 465 ARG A 613 REMARK 465 ILE A 614 REMARK 465 THR A 615 REMARK 465 GLY A 616 REMARK 465 ASP A 617 REMARK 465 TYR A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 CYS A 621 REMARK 465 THR A 622 REMARK 465 SER A 623 REMARK 465 GLY A 624 REMARK 465 ASN A 625 REMARK 465 THR A 626 REMARK 465 GLY A 627 REMARK 465 VAL A 731 REMARK 465 CYS B 602 REMARK 465 GLY B 603 REMARK 465 GLN B 604 REMARK 465 GLY B 605 REMARK 465 TYR B 606 REMARK 465 ASN B 607 REMARK 465 THR B 608 REMARK 465 GLN B 609 REMARK 465 ALA B 610 REMARK 465 VAL B 611 REMARK 465 ARG B 612 REMARK 465 ARG B 613 REMARK 465 ILE B 614 REMARK 465 THR B 615 REMARK 465 GLY B 616 REMARK 465 ASP B 617 REMARK 465 TYR B 618 REMARK 465 SER B 619 REMARK 465 ALA B 620 REMARK 465 CYS B 621 REMARK 465 THR B 622 REMARK 465 SER B 623 REMARK 465 GLY B 624 REMARK 465 ASN B 625 REMARK 465 THR B 626 REMARK 465 GLY B 627 REMARK 465 VAL B 731 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 198 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO B 145 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 120 77.04 -118.17 REMARK 500 SER A 128 -37.96 -37.73 REMARK 500 ASP A 140 -149.08 -170.11 REMARK 500 GLU A 153 130.09 -28.54 REMARK 500 PRO A 158 151.72 -46.31 REMARK 500 ASN A 175 -155.57 -126.02 REMARK 500 ALA A 181 117.51 -170.97 REMARK 500 HIS A 185 33.86 -141.58 REMARK 500 ARG A 188 -168.30 -112.40 REMARK 500 SER A 273 59.83 -101.92 REMARK 500 PHE A 312 -0.92 -53.90 REMARK 500 PHE A 313 50.10 -152.39 REMARK 500 SER A 350 159.60 166.14 REMARK 500 THR A 370 113.00 -34.90 REMARK 500 LYS A 374 0.27 -66.76 REMARK 500 CYS A 380 37.24 37.70 REMARK 500 SER A 384 30.31 -97.82 REMARK 500 SER A 420 148.67 -171.74 REMARK 500 ARG A 423 36.11 -146.48 REMARK 500 PRO A 432 108.25 -48.87 REMARK 500 SER A 434 126.07 -171.44 REMARK 500 SER A 450 -81.72 -85.54 REMARK 500 ARG A 452 -28.72 74.40 REMARK 500 SER A 453 62.48 -119.74 REMARK 500 PRO A 454 -168.84 -53.21 REMARK 500 PRO A 480 173.08 -58.98 REMARK 500 THR A 484 99.10 -162.72 REMARK 500 PRO A 543 -18.03 -46.51 REMARK 500 ALA A 569 -134.08 49.01 REMARK 500 PHE A 571 22.93 -72.85 REMARK 500 ALA A 572 -34.82 -139.63 REMARK 500 ALA A 592 -174.98 -172.13 REMARK 500 ASN A 633 50.09 -52.67 REMARK 500 SER A 644 70.05 30.63 REMARK 500 GLN A 645 82.51 -155.51 REMARK 500 THR A 646 134.43 -24.92 REMARK 500 ASN A 648 91.54 -162.20 REMARK 500 SER A 670 81.63 -155.12 REMARK 500 PRO A 672 -158.40 -72.29 REMARK 500 SER A 702 105.76 178.08 REMARK 500 SER B 114 -71.75 -37.01 REMARK 500 ASN B 133 48.97 -107.21 REMARK 500 ASP B 140 -141.62 -152.44 REMARK 500 PRO B 145 -19.62 -38.11 REMARK 500 GLU B 153 103.44 -29.30 REMARK 500 LYS B 163 -14.48 -143.58 REMARK 500 THR B 168 37.75 -97.68 REMARK 500 ASN B 171 98.35 53.47 REMARK 500 ASN B 175 -136.98 -83.96 REMARK 500 HIS B 185 48.83 -145.41 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3VTA A 111 731 UNP Q39547 CUCM1_CUCME 111 731 DBREF 3VTA B 111 731 UNP Q39547 CUCM1_CUCME 111 731 SEQRES 1 A 621 THR THR ARG SER TRP ASP PHE LEU GLY PHE PRO LEU THR SEQRES 2 A 621 VAL PRO ARG ARG SER GLN VAL GLU SER ASN ILE VAL VAL SEQRES 3 A 621 GLY VAL LEU ASP THR GLY ILE TRP PRO GLU SER PRO SER SEQRES 4 A 621 PHE ASP ASP GLU GLY PHE SER PRO PRO PRO PRO LYS TRP SEQRES 5 A 621 LYS GLY THR CYS GLU THR SER ASN ASN PHE ARG CYS ASN SEQRES 6 A 621 ARG LYS ILE ILE GLY ALA ARG SER TYR HIS ILE GLY ARG SEQRES 7 A 621 PRO ILE SER PRO GLY ASP VAL ASN GLY PRO ARG ASP THR SEQRES 8 A 621 ASN GLY HIS GLY THR HIS THR ALA SER THR ALA ALA GLY SEQRES 9 A 621 GLY LEU VAL SER GLN ALA ASN LEU TYR GLY LEU GLY LEU SEQRES 10 A 621 GLY THR ALA ARG GLY GLY VAL PRO LEU ALA ARG ILE ALA SEQRES 11 A 621 ALA TYR LYS VAL CYS TRP ASN ASP GLY CYS SER ASP THR SEQRES 12 A 621 ASP ILE LEU ALA ALA TYR ASP ASP ALA ILE ALA ASP GLY SEQRES 13 A 621 VAL ASP ILE ILE SER LEU SER VAL GLY GLY ALA ASN PRO SEQRES 14 A 621 ARG HIS TYR PHE VAL ASP ALA ILE ALA ILE GLY SER PHE SEQRES 15 A 621 HIS ALA VAL GLU ARG GLY ILE LEU THR SER ASN SER ALA SEQRES 16 A 621 GLY ASN GLY GLY PRO ASN PHE PHE THR THR ALA SER LEU SEQRES 17 A 621 SER PRO TRP LEU LEU SER VAL ALA ALA SER THR MET ASP SEQRES 18 A 621 ARG LYS PHE VAL THR GLN VAL GLN ILE GLY ASN GLY GLN SEQRES 19 A 621 SER PHE GLN GLY VAL SER ILE ASN THR PHE ASP ASN GLN SEQRES 20 A 621 TYR TYR PRO LEU VAL SER GLY ARG ASP ILE PRO ASN THR SEQRES 21 A 621 GLY PHE ASP LYS SER THR SER ARG PHE CYS THR ASP LYS SEQRES 22 A 621 SER VAL ASN PRO ASN LEU LEU LYS GLY LYS ILE VAL VAL SEQRES 23 A 621 CYS GLU ALA SER PHE GLY PRO HIS GLU PHE PHE LYS SER SEQRES 24 A 621 LEU ASP GLY ALA ALA GLY VAL LEU MET THR SER ASN THR SEQRES 25 A 621 ARG ASP TYR ALA ASP SER TYR PRO LEU PRO SER SER VAL SEQRES 26 A 621 LEU ASP PRO ASN ASP LEU LEU ALA THR LEU ARG TYR ILE SEQRES 27 A 621 TYR SER ILE ARG SER PRO GLY ALA THR ILE PHE LYS SER SEQRES 28 A 621 THR THR ILE LEU ASN ALA SER ALA PRO VAL VAL VAL SER SEQRES 29 A 621 PHE SER SER ARG GLY PRO ASN ARG ALA THR LYS ASP VAL SEQRES 30 A 621 ILE LYS PRO ASP ILE SER GLY PRO GLY VAL GLU ILE LEU SEQRES 31 A 621 ALA ALA TRP PRO SER VAL ALA PRO VAL GLY GLY ILE ARG SEQRES 32 A 621 ARG ASN THR LEU PHE ASN ILE ILE SER GLY THR SER MET SEQRES 33 A 621 SER CYS PRO HIS ILE THR GLY ILE ALA THR TYR VAL LYS SEQRES 34 A 621 THR TYR ASN PRO THR TRP SER PRO ALA ALA ILE LYS SER SEQRES 35 A 621 ALA LEU MET THR THR ALA SER PRO MET ASN ALA ARG PHE SEQRES 36 A 621 ASN PRO GLN ALA GLU PHE ALA TYR GLY SER GLY HIS VAL SEQRES 37 A 621 ASN PRO LEU LYS ALA VAL ARG PRO GLY LEU VAL TYR ASP SEQRES 38 A 621 ALA ASN GLU SER ASP TYR VAL LYS PHE LEU CYS GLY GLN SEQRES 39 A 621 GLY TYR ASN THR GLN ALA VAL ARG ARG ILE THR GLY ASP SEQRES 40 A 621 TYR SER ALA CYS THR SER GLY ASN THR GLY ARG VAL TRP SEQRES 41 A 621 ASP LEU ASN TYR PRO SER PHE GLY LEU SER VAL SER PRO SEQRES 42 A 621 SER GLN THR PHE ASN GLN TYR PHE ASN ARG THR LEU THR SEQRES 43 A 621 SER VAL ALA PRO GLN ALA SER THR TYR ARG ALA MET ILE SEQRES 44 A 621 SER ALA PRO GLN GLY LEU THR ILE SER VAL ASN PRO ASN SEQRES 45 A 621 VAL LEU SER PHE ASN GLY LEU GLY ASP ARG LYS SER PHE SEQRES 46 A 621 THR LEU THR VAL ARG GLY SER ILE LYS GLY PHE VAL VAL SEQRES 47 A 621 SER ALA SER LEU VAL TRP SER ASP GLY VAL HIS TYR VAL SEQRES 48 A 621 ARG SER PRO ILE THR ILE THR SER LEU VAL SEQRES 1 B 621 THR THR ARG SER TRP ASP PHE LEU GLY PHE PRO LEU THR SEQRES 2 B 621 VAL PRO ARG ARG SER GLN VAL GLU SER ASN ILE VAL VAL SEQRES 3 B 621 GLY VAL LEU ASP THR GLY ILE TRP PRO GLU SER PRO SER SEQRES 4 B 621 PHE ASP ASP GLU GLY PHE SER PRO PRO PRO PRO LYS TRP SEQRES 5 B 621 LYS GLY THR CYS GLU THR SER ASN ASN PHE ARG CYS ASN SEQRES 6 B 621 ARG LYS ILE ILE GLY ALA ARG SER TYR HIS ILE GLY ARG SEQRES 7 B 621 PRO ILE SER PRO GLY ASP VAL ASN GLY PRO ARG ASP THR SEQRES 8 B 621 ASN GLY HIS GLY THR HIS THR ALA SER THR ALA ALA GLY SEQRES 9 B 621 GLY LEU VAL SER GLN ALA ASN LEU TYR GLY LEU GLY LEU SEQRES 10 B 621 GLY THR ALA ARG GLY GLY VAL PRO LEU ALA ARG ILE ALA SEQRES 11 B 621 ALA TYR LYS VAL CYS TRP ASN ASP GLY CYS SER ASP THR SEQRES 12 B 621 ASP ILE LEU ALA ALA TYR ASP ASP ALA ILE ALA ASP GLY SEQRES 13 B 621 VAL ASP ILE ILE SER LEU SER VAL GLY GLY ALA ASN PRO SEQRES 14 B 621 ARG HIS TYR PHE VAL ASP ALA ILE ALA ILE GLY SER PHE SEQRES 15 B 621 HIS ALA VAL GLU ARG GLY ILE LEU THR SER ASN SER ALA SEQRES 16 B 621 GLY ASN GLY GLY PRO ASN PHE PHE THR THR ALA SER LEU SEQRES 17 B 621 SER PRO TRP LEU LEU SER VAL ALA ALA SER THR MET ASP SEQRES 18 B 621 ARG LYS PHE VAL THR GLN VAL GLN ILE GLY ASN GLY GLN SEQRES 19 B 621 SER PHE GLN GLY VAL SER ILE ASN THR PHE ASP ASN GLN SEQRES 20 B 621 TYR TYR PRO LEU VAL SER GLY ARG ASP ILE PRO ASN THR SEQRES 21 B 621 GLY PHE ASP LYS SER THR SER ARG PHE CYS THR ASP LYS SEQRES 22 B 621 SER VAL ASN PRO ASN LEU LEU LYS GLY LYS ILE VAL VAL SEQRES 23 B 621 CYS GLU ALA SER PHE GLY PRO HIS GLU PHE PHE LYS SER SEQRES 24 B 621 LEU ASP GLY ALA ALA GLY VAL LEU MET THR SER ASN THR SEQRES 25 B 621 ARG ASP TYR ALA ASP SER TYR PRO LEU PRO SER SER VAL SEQRES 26 B 621 LEU ASP PRO ASN ASP LEU LEU ALA THR LEU ARG TYR ILE SEQRES 27 B 621 TYR SER ILE ARG SER PRO GLY ALA THR ILE PHE LYS SER SEQRES 28 B 621 THR THR ILE LEU ASN ALA SER ALA PRO VAL VAL VAL SER SEQRES 29 B 621 PHE SER SER ARG GLY PRO ASN ARG ALA THR LYS ASP VAL SEQRES 30 B 621 ILE LYS PRO ASP ILE SER GLY PRO GLY VAL GLU ILE LEU SEQRES 31 B 621 ALA ALA TRP PRO SER VAL ALA PRO VAL GLY GLY ILE ARG SEQRES 32 B 621 ARG ASN THR LEU PHE ASN ILE ILE SER GLY THR SER MET SEQRES 33 B 621 SER CYS PRO HIS ILE THR GLY ILE ALA THR TYR VAL LYS SEQRES 34 B 621 THR TYR ASN PRO THR TRP SER PRO ALA ALA ILE LYS SER SEQRES 35 B 621 ALA LEU MET THR THR ALA SER PRO MET ASN ALA ARG PHE SEQRES 36 B 621 ASN PRO GLN ALA GLU PHE ALA TYR GLY SER GLY HIS VAL SEQRES 37 B 621 ASN PRO LEU LYS ALA VAL ARG PRO GLY LEU VAL TYR ASP SEQRES 38 B 621 ALA ASN GLU SER ASP TYR VAL LYS PHE LEU CYS GLY GLN SEQRES 39 B 621 GLY TYR ASN THR GLN ALA VAL ARG ARG ILE THR GLY ASP SEQRES 40 B 621 TYR SER ALA CYS THR SER GLY ASN THR GLY ARG VAL TRP SEQRES 41 B 621 ASP LEU ASN TYR PRO SER PHE GLY LEU SER VAL SER PRO SEQRES 42 B 621 SER GLN THR PHE ASN GLN TYR PHE ASN ARG THR LEU THR SEQRES 43 B 621 SER VAL ALA PRO GLN ALA SER THR TYR ARG ALA MET ILE SEQRES 44 B 621 SER ALA PRO GLN GLY LEU THR ILE SER VAL ASN PRO ASN SEQRES 45 B 621 VAL LEU SER PHE ASN GLY LEU GLY ASP ARG LYS SER PHE SEQRES 46 B 621 THR LEU THR VAL ARG GLY SER ILE LYS GLY PHE VAL VAL SEQRES 47 B 621 SER ALA SER LEU VAL TRP SER ASP GLY VAL HIS TYR VAL SEQRES 48 B 621 ARG SER PRO ILE THR ILE THR SER LEU VAL MODRES 3VTA ASN A 466 ASN GLYCOSYLATION SITE MODRES 3VTA ASN B 466 ASN GLYCOSYLATION SITE MODRES 3VTA ASN B 652 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET FUC D 5 10 HET NAG E 1 14 HET FUC E 2 10 HET NAG E 3 14 HET DFP A 801 10 HET DFP B 801 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM DFP DIISOPROPYL PHOSPHONATE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 3(C6 H12 O5) FORMUL 6 DFP 2(C6 H15 O3 P) FORMUL 8 HOH *206(H2 O) HELIX 1 1 ARG A 113 LEU A 118 1 6 HELIX 2 2 ARG A 127 SER A 132 1 6 HELIX 3 3 SER A 147 ASP A 151 5 5 HELIX 4 4 GLY A 203 GLY A 214 1 12 HELIX 5 5 SER A 251 GLY A 266 1 16 HELIX 6 6 ASN A 278 ASP A 285 5 8 HELIX 7 7 ALA A 286 GLU A 296 1 11 HELIX 8 8 ASP A 373 ARG A 378 1 6 HELIX 9 9 ASN A 386 LEU A 390 5 5 HELIX 10 10 GLY A 402 ASP A 411 1 10 HELIX 11 11 ASP A 437 ARG A 452 1 16 HELIX 12 12 GLY A 523 ASN A 542 1 20 HELIX 13 13 SER A 546 THR A 557 1 12 HELIX 14 14 ALA A 569 GLY A 574 1 6 HELIX 15 15 ASN A 579 VAL A 584 1 6 HELIX 16 16 ASN A 593 TYR A 597 5 5 HELIX 17 17 ARG A 628 LEU A 632 5 5 HELIX 18 18 ARG B 113 LEU B 118 1 6 HELIX 19 19 ARG B 127 ASN B 133 1 7 HELIX 20 20 GLY B 203 GLY B 214 1 12 HELIX 21 21 SER B 251 GLY B 266 1 16 HELIX 22 22 ASP B 285 GLU B 296 1 12 HELIX 23 23 ASP B 373 CYS B 380 1 8 HELIX 24 24 THR B 381 SER B 384 5 4 HELIX 25 25 GLY B 402 LYS B 408 1 7 HELIX 26 26 ASP B 437 LEU B 445 1 9 HELIX 27 27 GLY B 523 ASN B 542 1 20 HELIX 28 28 SER B 546 THR B 556 1 11 HELIX 29 29 ALA B 569 GLY B 574 1 6 HELIX 30 30 ASN B 579 VAL B 584 1 6 HELIX 31 31 ASN B 593 VAL B 598 1 6 HELIX 32 32 ARG B 628 LEU B 632 5 5 SHEET 1 A 7 ILE A 178 SER A 183 0 SHEET 2 A 7 ARG A 238 LYS A 243 1 O LYS A 243 N ARG A 182 SHEET 3 A 7 VAL A 135 ASP A 140 1 N VAL A 136 O ARG A 238 SHEET 4 A 7 ILE A 269 LEU A 272 1 O SER A 271 N GLY A 137 SHEET 5 A 7 LEU A 300 SER A 304 1 O SER A 302 N LEU A 272 SHEET 6 A 7 LEU A 323 SER A 328 1 O VAL A 325 N ASN A 303 SHEET 7 A 7 ILE A 492 PRO A 495 1 O GLY A 494 N SER A 328 SHEET 1 B 2 VAL A 217 LEU A 222 0 SHEET 2 B 2 LEU A 225 ALA A 230 -1 O LEU A 225 N LEU A 222 SHEET 1 C 2 CYS A 245 TRP A 246 0 SHEET 2 C 2 GLY A 249 CYS A 250 -1 O GLY A 249 N TRP A 246 SHEET 1 D 4 SER A 345 GLY A 348 0 SHEET 2 D 4 ARG A 332 ILE A 340 -1 N THR A 336 O GLY A 348 SHEET 3 D 4 ALA A 456 ILE A 458 -1 O THR A 457 N GLN A 339 SHEET 4 D 4 GLN A 357 TYR A 359 -1 N TYR A 359 O ALA A 456 SHEET 1 E 3 SER A 345 GLY A 348 0 SHEET 2 E 3 ARG A 332 ILE A 340 -1 N THR A 336 O GLY A 348 SHEET 3 E 3 THR A 462 LEU A 465 -1 O THR A 462 N VAL A 335 SHEET 1 F 4 LEU A 361 SER A 363 0 SHEET 2 F 4 ILE A 394 VAL A 396 1 O VAL A 396 N VAL A 362 SHEET 3 F 4 GLY A 415 THR A 419 1 O GLY A 415 N VAL A 395 SHEET 4 F 4 SER A 433 LEU A 436 1 O LEU A 436 N MET A 418 SHEET 1 G 2 ILE A 499 ALA A 502 0 SHEET 2 G 2 PHE A 518 ILE A 521 -1 O ASN A 519 N ALA A 501 SHEET 1 H 4 LEU A 588 VAL A 589 0 SHEET 2 H 4 PHE A 647 SER A 657 -1 O THR A 656 N VAL A 589 SHEET 3 H 4 ARG A 692 GLY A 701 -1 O VAL A 699 N GLN A 649 SHEET 4 H 4 LEU A 675 ASN A 680 -1 N THR A 676 O ARG A 700 SHEET 1 I 5 PHE A 637 SER A 640 0 SHEET 2 I 5 ARG A 722 THR A 728 1 O THR A 726 N PHE A 637 SHEET 3 I 5 VAL A 707 SER A 715 -1 N ALA A 710 O ILE A 725 SHEET 4 I 5 SER A 663 SER A 670 -1 N MET A 668 O VAL A 713 SHEET 5 I 5 VAL A 683 PHE A 686 -1 O LEU A 684 N TYR A 665 SHEET 1 J 6 GLY B 180 SER B 183 0 SHEET 2 J 6 ARG B 238 LYS B 243 1 O LYS B 243 N ARG B 182 SHEET 3 J 6 VAL B 135 ASP B 140 1 N VAL B 136 O ARG B 238 SHEET 4 J 6 ILE B 269 LEU B 272 1 O ILE B 269 N GLY B 137 SHEET 5 J 6 LEU B 300 SER B 304 1 O SER B 302 N LEU B 272 SHEET 6 J 6 LEU B 323 VAL B 325 1 O VAL B 325 N ASN B 303 SHEET 1 K 2 CYS B 245 TRP B 246 0 SHEET 2 K 2 GLY B 249 CYS B 250 -1 O GLY B 249 N TRP B 246 SHEET 1 L 4 SER B 345 GLY B 348 0 SHEET 2 L 4 ARG B 332 ILE B 340 -1 N THR B 336 O GLY B 348 SHEET 3 L 4 ALA B 456 LEU B 465 -1 O THR B 462 N VAL B 335 SHEET 4 L 4 GLN B 357 TYR B 358 -1 N GLN B 357 O ILE B 458 SHEET 1 M 3 LEU B 361 SER B 363 0 SHEET 2 M 3 ILE B 394 VAL B 396 1 O ILE B 394 N VAL B 362 SHEET 3 M 3 VAL B 416 LEU B 417 1 O LEU B 417 N VAL B 395 SHEET 1 N 2 ILE B 499 ALA B 502 0 SHEET 2 N 2 PHE B 518 ILE B 521 -1 O ASN B 519 N ALA B 501 SHEET 1 O 4 LEU B 588 VAL B 589 0 SHEET 2 O 4 PHE B 647 SER B 657 -1 O THR B 656 N VAL B 589 SHEET 3 O 4 ARG B 692 GLY B 701 -1 O LYS B 693 N LEU B 655 SHEET 4 O 4 LEU B 675 ASN B 680 -1 N ASN B 680 O THR B 696 SHEET 1 P 5 PHE B 637 SER B 640 0 SHEET 2 P 5 TYR B 720 THR B 728 1 O THR B 728 N LEU B 639 SHEET 3 P 5 VAL B 707 SER B 715 -1 N TRP B 714 O VAL B 721 SHEET 4 P 5 SER B 663 SER B 670 -1 N ARG B 666 O SER B 715 SHEET 5 P 5 VAL B 683 PHE B 686 -1 O LEU B 684 N TYR B 665 SSBOND 1 CYS A 166 CYS A 174 1555 1555 2.04 SSBOND 2 CYS A 245 CYS A 250 1555 1555 2.05 SSBOND 3 CYS A 380 CYS A 397 1555 1555 2.03 SSBOND 4 CYS B 166 CYS B 174 1555 1555 2.04 SSBOND 5 CYS B 245 CYS B 250 1555 1555 2.05 SSBOND 6 CYS B 380 CYS B 397 1555 1555 2.03 LINK ND2 ASN A 466 C1 NAG C 1 1555 1555 1.45 LINK OG SER A 525 P DFP A 801 1555 1555 1.57 LINK ND2 ASN B 466 C1 NAG D 1 1555 1555 1.45 LINK OG SER B 525 P DFP B 801 1555 1555 1.56 LINK ND2 ASN B 652 C1 NAG E 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O3 NAG C 1 C1 FUC C 5 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O3 NAG D 1 C1 FUC D 5 1555 1555 1.40 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.39 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.41 LINK O3 NAG E 1 C1 FUC E 2 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 3 1555 1555 1.38 CISPEP 1 GLY A 309 PRO A 310 0 0.43 CISPEP 2 ALA A 469 PRO A 470 0 1.32 CISPEP 3 GLY A 479 PRO A 480 0 0.34 CISPEP 4 LYS A 489 PRO A 490 0 0.12 CISPEP 5 ASN A 680 PRO A 681 0 -0.34 CISPEP 6 GLY B 309 PRO B 310 0 0.42 CISPEP 7 ALA B 469 PRO B 470 0 -0.30 CISPEP 8 GLY B 479 PRO B 480 0 0.02 CISPEP 9 LYS B 489 PRO B 490 0 -0.11 CISPEP 10 ASN B 680 PRO B 681 0 -0.61 CRYST1 149.483 149.483 218.035 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006690 0.003862 0.000000 0.00000 SCALE2 0.000000 0.007725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004586 0.00000