HEADER OXIDOREDUCTASE 30-MAY-12 3VTJ TITLE CYTOCHROME P450SP ALPHA (CYP152B1) MUTANT A245H COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID ALPHA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.2.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-AX2 KEYWDS CYTOCHROME P450, PEROXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,O.SHOJI,H.SUGIMOTO,Y.SHIRO,Y.WATANABE REVDAT 3 08-NOV-23 3VTJ 1 REMARK SEQADV REVDAT 2 10-MAY-17 3VTJ 1 JRNL REVDAT 1 05-JUN-13 3VTJ 0 JRNL AUTH O.SHOJI,T.FUJISHIRO,K.NISHIO,Y.KANO,H.KIMOTO,S.-C.CHIEN, JRNL AUTH 2 H.ONODA,A.MURAMATSU,S.TANAKA,A.HORI,H.SUGIMOTO,Y.SHIRO, JRNL AUTH 3 Y.WATANABE JRNL TITL A SUBSTRATE-BINDING-STATE MIMIC OF H2O2-DEPENDENT CYTOCHROME JRNL TITL 2 P450 PRODUCED BY ONE-POINT MUTAGENESIS AND PEROXYGENATION OF JRNL TITL 3 NON-NATIVE SUBSTRATES JRNL REF CATALYSIS SCIENCE AND V. 6 5806 2016 JRNL REF 2 TECHNOLOGY JRNL REFN ISSN 2044-4753 JRNL DOI 10.1039/C6CY00630B REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.399 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.841 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3371 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4590 ; 1.612 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 5.948 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;31.531 ;22.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;14.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2672 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2960 7.0490 15.1240 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.0249 REMARK 3 T33: 0.1247 T12: 0.0624 REMARK 3 T13: -0.0416 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0118 L22: 1.0475 REMARK 3 L33: 2.5571 L12: -0.3684 REMARK 3 L13: 0.3486 L23: -0.5679 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: 0.1049 S13: -0.0375 REMARK 3 S21: -0.1955 S22: -0.0641 S23: 0.1353 REMARK 3 S31: -0.0541 S32: -0.0374 S33: -0.0601 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1690 8.7180 19.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.3895 T22: 0.0773 REMARK 3 T33: 0.3608 T12: 0.0664 REMARK 3 T13: -0.0507 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.2784 L22: 5.5428 REMARK 3 L33: 0.4775 L12: 3.1495 REMARK 3 L13: 1.0248 L23: 1.5568 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: 0.0222 S13: 0.4894 REMARK 3 S21: -0.2653 S22: 0.0511 S23: 0.1453 REMARK 3 S31: -0.0822 S32: 0.0126 S33: 0.1352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3VTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, 17.5% MPD, 25MM MES, 10% REMARK 280 GLYCEROL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.06100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.12200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.12200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.06100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 HIS A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 56.36 -151.32 REMARK 500 LEU A 41 -144.87 61.46 REMARK 500 THR A 76 -77.19 -143.10 REMARK 500 MET A 102 40.98 -102.86 REMARK 500 SER A 176 -160.24 96.32 REMARK 500 PRO A 177 17.76 -66.71 REMARK 500 PHE A 287 -85.63 -135.78 REMARK 500 GLU A 342 28.63 48.79 REMARK 500 ALA A 381 -33.70 -130.67 REMARK 500 PHE A 406 91.18 64.41 REMARK 500 ILE A 413 -18.66 -144.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 HEM A 501 NA 113.4 REMARK 620 3 HEM A 501 NB 98.6 85.2 REMARK 620 4 HEM A 501 NC 102.9 143.7 89.2 REMARK 620 5 HEM A 501 ND 101.1 85.2 160.2 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AWM RELATED DB: PDB REMARK 900 THE WILD-TYPE OF THE SAME PROTEIN. DBREF 3VTJ A 1 415 UNP O24782 O24782_PSEPA 1 415 SEQADV 3VTJ HIS A 245 UNP O24782 ALA 245 ENGINEERED MUTATION SEQRES 1 A 415 MET PRO LYS THR PRO HIS THR LYS GLY PRO ASP GLU THR SEQRES 2 A 415 LEU SER LEU LEU ALA ASP PRO TYR ARG PHE ILE SER ARG SEQRES 3 A 415 GLN CYS GLN ARG LEU GLY ALA ASN ALA PHE GLU SER ARG SEQRES 4 A 415 PHE LEU LEU LYS LYS THR ASN CYS LEU LYS GLY ALA LYS SEQRES 5 A 415 ALA ALA GLU ILE PHE TYR ASP THR THR ARG PHE GLU ARG SEQRES 6 A 415 GLU GLY ALA MET PRO VAL ALA ILE GLN LYS THR LEU LEU SEQRES 7 A 415 GLY GLN GLY GLY VAL GLN GLY LEU ASP GLY GLU THR HIS SEQRES 8 A 415 ARG HIS ARG LYS GLN MET PHE MET GLY LEU MET THR PRO SEQRES 9 A 415 GLU ARG VAL ARG ALA LEU ALA GLN LEU PHE GLU ALA GLU SEQRES 10 A 415 TRP ARG ARG ALA VAL PRO GLY TRP THR ARG LYS GLY GLU SEQRES 11 A 415 ILE VAL PHE TYR ASP GLU LEU HIS GLU PRO LEU THR ARG SEQRES 12 A 415 ALA VAL CYS ALA TRP ALA GLY VAL PRO LEU PRO ASP ASP SEQRES 13 A 415 GLU ALA GLY ASN ARG ALA GLY GLU LEU ARG ALA LEU PHE SEQRES 14 A 415 ASP ALA ALA GLY SER ALA SER PRO ARG HIS LEU TRP SER SEQRES 15 A 415 ARG LEU ALA ARG ARG ARG VAL ASP ALA TRP ALA LYS ARG SEQRES 16 A 415 ILE ILE GLU GLY ILE ARG ALA GLY SER ILE GLY SER GLY SEQRES 17 A 415 SER GLY THR ALA ALA TYR ALA ILE ALA TRP HIS ARG ASP SEQRES 18 A 415 ARG HIS ASP ASP LEU LEU SER PRO HIS VAL ALA ALA VAL SEQRES 19 A 415 GLU LEU VAL ASN VAL LEU ARG PRO THR VAL HIS ILE ALA SEQRES 20 A 415 VAL TYR ILE THR PHE VAL ALA HIS ALA LEU GLN THR CYS SEQRES 21 A 415 SER GLY ILE ARG ALA ALA LEU VAL GLN GLN PRO ASP TYR SEQRES 22 A 415 ALA GLU LEU PHE VAL GLN GLU VAL ARG ARG PHE TYR PRO SEQRES 23 A 415 PHE PHE PRO ALA VAL VAL ALA ARG ALA SER GLN ASP PHE SEQRES 24 A 415 GLU TRP GLU GLY MET ALA PHE PRO GLU GLY ARG GLN VAL SEQRES 25 A 415 VAL LEU ASP LEU TYR GLY SER ASN HIS ASP ALA ALA THR SEQRES 26 A 415 TRP ALA ASP PRO GLN GLU PHE ARG PRO GLU ARG PHE ARG SEQRES 27 A 415 ALA TRP ASP GLU ASP SER PHE ASN PHE ILE PRO GLN GLY SEQRES 28 A 415 GLY GLY ASP HIS TYR LEU GLY HIS ARG CYS PRO GLY GLU SEQRES 29 A 415 TRP ILE VAL LEU ALA ILE MET LYS VAL ALA ALA HIS LEU SEQRES 30 A 415 LEU VAL ASN ALA MET ARG TYR ASP VAL PRO ASP GLN ASP SEQRES 31 A 415 LEU SER ILE ASP PHE ALA ARG LEU PRO ALA LEU PRO LYS SEQRES 32 A 415 SER GLY PHE VAL MET ARG ASN VAL HIS ILE GLY GLY HET HEM A 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *56(H2 O) HELIX 1 1 GLU A 12 ASP A 19 1 8 HELIX 2 2 ARG A 22 GLY A 32 1 11 HELIX 3 3 GLY A 50 TYR A 58 1 9 HELIX 4 4 PRO A 70 LYS A 75 1 6 HELIX 5 5 GLY A 82 LEU A 86 5 5 HELIX 6 6 ASP A 87 GLY A 100 1 14 HELIX 7 7 THR A 103 ARG A 127 1 25 HELIX 8 8 TYR A 134 GLU A 136 5 3 HELIX 9 9 LEU A 137 ALA A 149 1 13 HELIX 10 10 PRO A 154 ASP A 156 5 3 HELIX 11 11 GLU A 157 ALA A 171 1 15 HELIX 12 12 SER A 176 ALA A 202 1 27 HELIX 13 13 THR A 211 HIS A 219 1 9 HELIX 14 14 SER A 228 HIS A 245 1 18 HELIX 15 15 HIS A 245 CYS A 260 1 16 HELIX 16 16 GLY A 262 GLN A 270 1 9 HELIX 17 17 ASP A 272 TYR A 285 1 14 HELIX 18 18 LEU A 316 HIS A 321 1 6 HELIX 19 19 ARG A 333 ALA A 339 5 7 HELIX 20 20 GLY A 363 ALA A 381 1 19 SHEET 1 A 5 ALA A 35 PHE A 40 0 SHEET 2 A 5 LYS A 43 LYS A 49 -1 O THR A 45 N SER A 38 SHEET 3 A 5 GLN A 311 ASP A 315 1 O VAL A 313 N LEU A 48 SHEET 4 A 5 ALA A 290 ALA A 295 -1 N VAL A 291 O LEU A 314 SHEET 5 A 5 PHE A 63 GLU A 64 -1 N GLU A 64 O ARG A 294 SHEET 1 B 3 GLU A 130 VAL A 132 0 SHEET 2 B 3 VAL A 407 HIS A 412 -1 O MET A 408 N ILE A 131 SHEET 3 B 3 ARG A 383 ASP A 385 -1 N ASP A 385 O ARG A 409 SHEET 1 C 2 PHE A 299 TRP A 301 0 SHEET 2 C 2 MET A 304 PHE A 306 -1 O PHE A 306 N PHE A 299 LINK SG CYS A 361 FE HEM A 501 1555 1555 2.26 CISPEP 1 LEU A 398 PRO A 399 0 1.33 SITE 1 AC1 23 TYR A 58 ARG A 65 VAL A 83 GLN A 84 SITE 2 AC1 23 HIS A 91 LYS A 95 PHE A 98 ASN A 238 SITE 3 AC1 23 PRO A 242 ILE A 246 TYR A 249 PHE A 287 SITE 4 AC1 23 PHE A 288 VAL A 291 LEU A 316 GLN A 350 SITE 5 AC1 23 HIS A 359 CYS A 361 PRO A 362 GLY A 363 SITE 6 AC1 23 VAL A 367 HOH A 603 HOH A 621 CRYST1 94.558 94.558 114.183 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010576 0.006106 0.000000 0.00000 SCALE2 0.000000 0.012212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008758 0.00000