HEADER METAL BINDING PROTEIN 01-JUN-12 3VTO TITLE THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF MU PHAGE CENTRAL TITLE 2 SPIKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GP45; COMPND 3 CHAIN: A, B, C, P, Q, R; COMPND 4 FRAGMENT: UNP RESIDUES 92-197; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677; SOURCE 4 GENE: 45; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA-HELIX, CENTRAL SPIKE, MU PHAGE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.HARADA,E.YAMASHITA,A.NAKAGAWA,S.TAKEDA REVDAT 2 20-MAR-24 3VTO 1 REMARK SEQADV LINK REVDAT 1 06-FEB-13 3VTO 0 JRNL AUTH K.HARADA,E.YAMASHITA,A.NAKAGAWA,T.MIYAFUSA,K.TSUMOTO,T.UENO, JRNL AUTH 2 Y.TOYAMA,S.TAKEDA JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF MU PHAGE JRNL TITL 2 CENTRAL SPIKE AND FUNCTIONS OF BOUND CALCIUM ION JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 284 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 22922659 JRNL DOI 10.1016/J.BBAPAP.2012.08.015 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 108768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 407 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5002 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6764 ; 1.636 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;27.112 ;23.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;11.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;23.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3807 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3168 ; 1.734 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5138 ; 2.723 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1834 ; 4.337 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1622 ; 6.562 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5002 ; 2.080 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114876 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 20000, 0.1M MES, 0.15M SODIUM REMARK 280 CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.19950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, Q, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 91 REMARK 465 ARG A 92 REMARK 465 ARG A 93 REMARK 465 TYR A 94 REMARK 465 ARG A 95 REMARK 465 PRO A 96 REMARK 465 THR A 97 REMARK 465 ASN A 98 REMARK 465 LEU A 99 REMARK 465 GLU A 100 REMARK 465 PRO A 101 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 MET C 91 REMARK 465 HIS C 201 REMARK 465 HIS C 202 REMARK 465 HIS C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 MET P 91 REMARK 465 ARG P 92 REMARK 465 ARG P 93 REMARK 465 TYR P 94 REMARK 465 ARG P 95 REMARK 465 PRO P 96 REMARK 465 THR P 97 REMARK 465 ASN P 98 REMARK 465 HIS P 202 REMARK 465 HIS P 203 REMARK 465 HIS P 204 REMARK 465 HIS P 205 REMARK 465 GLU Q 199 REMARK 465 HIS Q 200 REMARK 465 HIS Q 201 REMARK 465 HIS Q 202 REMARK 465 HIS Q 203 REMARK 465 HIS Q 204 REMARK 465 HIS Q 205 REMARK 465 MET R 91 REMARK 465 ARG R 92 REMARK 465 ARG R 93 REMARK 465 TYR R 94 REMARK 465 ARG R 95 REMARK 465 PRO R 96 REMARK 465 HIS R 200 REMARK 465 HIS R 201 REMARK 465 HIS R 202 REMARK 465 HIS R 203 REMARK 465 HIS R 204 REMARK 465 HIS R 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 98 CG OD1 ND2 REMARK 470 HIS P 201 CG ND1 CD2 CE1 NE2 REMARK 470 THR R 97 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 115 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG C 115 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP C 188 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG Q 115 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 154 -129.80 -114.62 REMARK 500 ARG B 93 -158.28 -116.40 REMARK 500 LYS B 154 -130.57 -116.94 REMARK 500 LYS C 154 -135.05 -116.91 REMARK 500 LYS P 154 -130.40 -119.80 REMARK 500 LYS Q 154 -130.38 -115.81 REMARK 500 LYS R 154 -128.25 -114.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HIS A 185 NE2 92.8 REMARK 620 3 HIS B 183 NE2 89.6 176.3 REMARK 620 4 HIS B 185 NE2 87.6 91.0 91.9 REMARK 620 5 HIS C 183 NE2 90.8 87.6 89.6 177.9 REMARK 620 6 HIS C 185 NE2 178.2 88.0 89.7 90.7 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 188 OD1 REMARK 620 2 SER A 189 OG 86.0 REMARK 620 3 ASP B 188 OD1 102.3 87.4 REMARK 620 4 SER B 189 OG 163.9 78.5 81.5 REMARK 620 5 ASP C 188 OD1 104.9 162.4 103.3 89.2 REMARK 620 6 SER C 189 OG 88.1 81.1 164.0 85.3 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE P 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 183 NE2 REMARK 620 2 HIS P 185 NE2 91.9 REMARK 620 3 HIS Q 183 NE2 90.8 176.0 REMARK 620 4 HIS Q 185 NE2 88.7 90.5 92.5 REMARK 620 5 HIS R 183 NE2 89.5 86.6 90.5 176.5 REMARK 620 6 HIS R 185 NE2 177.3 89.5 87.9 89.0 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA Q 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 188 OD1 REMARK 620 2 SER P 189 OG 83.2 REMARK 620 3 ASP Q 188 OD1 101.2 87.9 REMARK 620 4 SER Q 189 OG 165.9 84.5 85.1 REMARK 620 5 ASP R 188 OD1 102.6 165.2 104.0 87.9 REMARK 620 6 SER R 189 OG 91.4 80.2 161.6 79.7 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE P 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Q 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTN RELATED DB: PDB DBREF 3VTO A 92 197 UNP Q9T1V4 VG45_BPMU 92 197 DBREF 3VTO B 92 197 UNP Q9T1V4 VG45_BPMU 92 197 DBREF 3VTO C 92 197 UNP Q9T1V4 VG45_BPMU 92 197 DBREF 3VTO P 92 197 UNP Q9T1V4 VG45_BPMU 92 197 DBREF 3VTO Q 92 197 UNP Q9T1V4 VG45_BPMU 92 197 DBREF 3VTO R 92 197 UNP Q9T1V4 VG45_BPMU 92 197 SEQADV 3VTO MET A 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU A 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU A 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS A 205 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO MET B 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU B 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU B 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS B 205 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO MET C 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU C 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU C 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS C 205 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO MET P 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU P 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU P 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS P 205 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO MET Q 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU Q 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU Q 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS Q 205 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO MET R 91 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO LEU R 198 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO GLU R 199 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 200 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 201 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 202 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 203 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 204 UNP Q9T1V4 EXPRESSION TAG SEQADV 3VTO HIS R 205 UNP Q9T1V4 EXPRESSION TAG SEQRES 1 A 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 A 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 A 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 A 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 A 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 A 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 A 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 A 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 A 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 B 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 B 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 B 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 B 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 B 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 B 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 B 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 B 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 C 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 C 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 C 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 C 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 C 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 C 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 C 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 C 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 P 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 P 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 P 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 P 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 P 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 P 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 P 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 P 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 P 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 Q 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 Q 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 Q 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 Q 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 Q 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 Q 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 Q 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 Q 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 Q 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 R 115 MET ARG ARG TYR ARG PRO THR ASN LEU GLU PRO GLY ASP SEQRES 2 R 115 ALA GLY ILE TYR HIS HIS GLU GLY HIS ARG ILE ARG LEU SEQRES 3 R 115 THR LYS ASP GLY ARG CYS ILE ILE THR CYS LYS THR VAL SEQRES 4 R 115 GLU VAL TYR ALA ASP GLU SER MET THR VAL ASP THR PRO SEQRES 5 R 115 ARG THR THR PHE THR GLY ASP VAL GLU ILE GLN LYS GLY SEQRES 6 R 115 LEU GLY VAL LYS GLY LYS SER GLN PHE ASP SER ASN ILE SEQRES 7 R 115 THR ALA PRO ASP ALA ILE ILE ASN GLY LYS SER THR ASP SEQRES 8 R 115 LYS HIS ILE HIS ARG GLY ASP SER GLY GLY THR THR GLY SEQRES 9 R 115 PRO MET GLN LEU GLU HIS HIS HIS HIS HIS HIS HET FE A 301 1 HET CA A 302 1 HET CL C 301 1 HET FE P 301 1 HET CL P 302 1 HET CA Q 301 1 HETNAM FE FE (III) ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 7 FE 2(FE 3+) FORMUL 8 CA 2(CA 2+) FORMUL 9 CL 2(CL 1-) FORMUL 13 HOH *578(H2 O) LINK NE2 HIS A 183 FE FE A 301 1555 1555 2.18 LINK NE2 HIS A 185 FE FE A 301 1555 1555 2.18 LINK OD1 ASP A 188 CA CA A 302 1555 1555 2.24 LINK OG SER A 189 CA CA A 302 1555 1555 2.44 LINK FE FE A 301 NE2 HIS B 183 1555 1555 2.20 LINK FE FE A 301 NE2 HIS B 185 1555 1555 2.18 LINK FE FE A 301 NE2 HIS C 183 1555 1555 2.20 LINK FE FE A 301 NE2 HIS C 185 1555 1555 2.17 LINK CA CA A 302 OD1 ASP B 188 1555 1555 2.31 LINK CA CA A 302 OG SER B 189 1555 1555 2.39 LINK CA CA A 302 OD1 ASP C 188 1555 1555 2.16 LINK CA CA A 302 OG SER C 189 1555 1555 2.46 LINK NE2 HIS P 183 FE FE P 301 1555 1555 2.16 LINK NE2 HIS P 185 FE FE P 301 1555 1555 2.22 LINK OD1 ASP P 188 CA CA Q 301 1555 1555 2.31 LINK OG SER P 189 CA CA Q 301 1555 1555 2.41 LINK FE FE P 301 NE2 HIS Q 183 1555 1555 2.17 LINK FE FE P 301 NE2 HIS Q 185 1555 1555 2.20 LINK FE FE P 301 NE2 HIS R 183 1555 1555 2.19 LINK FE FE P 301 NE2 HIS R 185 1555 1555 2.18 LINK OD1 ASP Q 188 CA CA Q 301 1555 1555 2.20 LINK OG SER Q 189 CA CA Q 301 1555 1555 2.49 LINK CA CA Q 301 OD1 ASP R 188 1555 1555 2.24 LINK CA CA Q 301 OG SER R 189 1555 1555 2.41 SITE 1 AC1 6 HIS A 183 HIS A 185 HIS B 183 HIS B 185 SITE 2 AC1 6 HIS C 183 HIS C 185 SITE 1 AC2 6 ASP A 188 SER A 189 ASP B 188 SER B 189 SITE 2 AC2 6 ASP C 188 SER C 189 SITE 1 AC3 6 GLY A 187 ASP A 188 GLY B 187 ASP B 188 SITE 2 AC3 6 GLY C 187 ASP C 188 SITE 1 AC4 6 HIS P 183 HIS P 185 HIS Q 183 HIS Q 185 SITE 2 AC4 6 HIS R 183 HIS R 185 SITE 1 AC5 6 GLY P 187 ASP P 188 GLY Q 187 ASP Q 188 SITE 2 AC5 6 GLY R 187 ASP R 188 SITE 1 AC6 6 ASP P 188 SER P 189 ASP Q 188 SER Q 189 SITE 2 AC6 6 ASP R 188 SER R 189 CRYST1 40.403 152.399 53.062 90.00 91.01 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024751 0.000000 0.000435 0.00000 SCALE2 0.000000 0.006562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018849 0.00000