HEADER PROTEIN BINDING 08-JUN-12 3VTY TITLE CRYSTAL STRUCTURE OF MAMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAMA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS MAGNETOBACTERIUM BAVARICUM; SOURCE 3 ORGANISM_TAXID: 29290; SOURCE 4 STRAIN: MBAV; SOURCE 5 GENE: MAMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS TETRATRICOPEPTIDE REPEATS (TPR) CONTAINING PROTEIN, TPR PROTEINS, KEYWDS 2 PROTEIN-PROTEIN INTERACTIONS, CYTOSOL, PEPTIDE BINDING PROTEIN, KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.ZEYTUNI,D.BARAN,G.DAVIDOV,R.ZARIVACH REVDAT 3 20-MAR-24 3VTY 1 REMARK REVDAT 2 14-AUG-13 3VTY 1 JRNL REVDAT 1 31-OCT-12 3VTY 0 JRNL AUTH N.ZEYTUNI,D.BARAN,G.DAVIDOV,R.ZARIVACH JRNL TITL INTER-PHYLUM STRUCTURAL CONSERVATION OF THE JRNL TITL 2 MAGNETOSOME-ASSOCIATED TPR-CONTAINING PROTEIN, MAMA JRNL REF J.STRUCT.BIOL. V. 180 479 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22917855 JRNL DOI 10.1016/J.JSB.2012.08.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 49745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 604 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5724 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3991 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7707 ; 1.734 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9819 ; 1.130 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 729 ; 5.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;33.978 ;25.020 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;16.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6289 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1116 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3506 ; 1.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1447 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5613 ; 2.004 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2218 ; 3.220 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2077 ; 5.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9777 44.8424 16.8454 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0322 REMARK 3 T33: 0.0656 T12: 0.0074 REMARK 3 T13: 0.0069 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.4031 L22: 0.1536 REMARK 3 L33: 0.1939 L12: 0.2237 REMARK 3 L13: 0.1356 L23: 0.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0387 S13: -0.0378 REMARK 3 S21: -0.0065 S22: -0.0218 S23: -0.0245 REMARK 3 S31: -0.0009 S32: -0.0116 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6772 43.6332 -14.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0262 REMARK 3 T33: 0.0784 T12: -0.0094 REMARK 3 T13: 0.0351 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.2743 L22: 0.1658 REMARK 3 L33: 0.3089 L12: -0.1837 REMARK 3 L13: 0.0348 L23: -0.1266 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.0464 S13: -0.0559 REMARK 3 S21: 0.0216 S22: -0.0371 S23: 0.0142 REMARK 3 S31: 0.0450 S32: 0.0037 S33: 0.1012 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 219 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2533 56.9737 -15.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0486 REMARK 3 T33: 0.0428 T12: -0.0084 REMARK 3 T13: 0.0015 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.1534 L22: 0.3542 REMARK 3 L33: 0.3585 L12: -0.2284 REMARK 3 L13: -0.1266 L23: 0.1295 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0380 S13: -0.0141 REMARK 3 S21: 0.0291 S22: -0.0601 S23: 0.0043 REMARK 3 S31: -0.0046 S32: -0.0271 S33: 0.0774 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 46 D 216 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5283 58.8504 17.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0489 REMARK 3 T33: 0.0508 T12: 0.0219 REMARK 3 T13: -0.0111 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1760 L22: 0.3076 REMARK 3 L33: 0.5270 L12: 0.2273 REMARK 3 L13: -0.0524 L23: -0.1201 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0445 S13: -0.0163 REMARK 3 S21: -0.0068 S22: -0.0629 S23: -0.0099 REMARK 3 S31: -0.0321 S32: 0.0158 S33: 0.0603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3VTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 81.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.4, 1.75M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.85050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.77650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.77650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.85050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 217 REMARK 465 LEU A 218 REMARK 465 ALA A 219 REMARK 465 LEU A 220 REMARK 465 VAL A 221 REMARK 465 PRO A 222 REMARK 465 ARG A 223 REMARK 465 MET B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 217 REMARK 465 LEU B 218 REMARK 465 ALA B 219 REMARK 465 LEU B 220 REMARK 465 VAL B 221 REMARK 465 PRO B 222 REMARK 465 ARG B 223 REMARK 465 MET C 40 REMARK 465 GLY C 41 REMARK 465 LEU C 220 REMARK 465 VAL C 221 REMARK 465 PRO C 222 REMARK 465 ARG C 223 REMARK 465 MET D 40 REMARK 465 GLY D 41 REMARK 465 GLU D 42 REMARK 465 THR D 43 REMARK 465 THR D 44 REMARK 465 THR D 45 REMARK 465 GLU D 217 REMARK 465 LEU D 218 REMARK 465 ALA D 219 REMARK 465 LEU D 220 REMARK 465 VAL D 221 REMARK 465 PRO D 222 REMARK 465 ARG D 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 524 1.76 REMARK 500 O HOH D 491 O HOH D 528 2.01 REMARK 500 O HOH B 401 O HOH B 464 2.07 REMARK 500 OG1 THR C 143 O HOH C 572 2.08 REMARK 500 NZ LYS D 86 O HOH D 453 2.11 REMARK 500 O HOH B 407 O HOH B 494 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 167 CB GLU A 167 CG -0.196 REMARK 500 TYR A 202 CD1 TYR A 202 CE1 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 133 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG D 137 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 161 68.05 -104.09 REMARK 500 LYS A 215 30.42 -85.93 REMARK 500 ASP B 126 42.93 33.36 REMARK 500 GLU C 161 71.39 -101.63 REMARK 500 GLU C 217 -8.62 -54.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTX RELATED DB: PDB REMARK 900 OTHER CRYSTAL FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE OF THE THE SEQUENCE OF THIS PROTEIN WAS NOT REMARK 999 AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE REMARK 999 TIME OF DEPOSITION. RESIDUES 42 TO END OF THE ENTIRE PROTEIN WAS REMARK 999 CLONED, N-TERMINAL RESIDUES MG (40-41) AND C-TERMINAL RESIDUES REMARK 999 ELALVPR (217-223) WERE FROM EXPRESSION TAG. DBREF 3VTY A 40 223 PDB 3VTY 3VTY 40 223 DBREF 3VTY B 40 223 PDB 3VTY 3VTY 40 223 DBREF 3VTY C 40 223 PDB 3VTY 3VTY 40 223 DBREF 3VTY D 40 223 PDB 3VTY 3VTY 40 223 SEQRES 1 A 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 A 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 A 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 A 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 A 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 A 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 A 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 A 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 A 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 A 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 A 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 A 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 A 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 A 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 A 184 PRO ARG SEQRES 1 B 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 B 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 B 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 B 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 B 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 B 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 B 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 B 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 B 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 B 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 B 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 B 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 B 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 B 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 B 184 PRO ARG SEQRES 1 C 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 C 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 C 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 C 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 C 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 C 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 C 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 C 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 C 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 C 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 C 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 C 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 C 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 C 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 C 184 PRO ARG SEQRES 1 D 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 D 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 D 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 D 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 D 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 D 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 D 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 D 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 D 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 D 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 D 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 D 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 D 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 D 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 D 184 PRO ARG HET CL A 301 1 HET CL B 301 1 HET CL B 302 1 HET CL C 301 1 HET CL D 301 1 HET CL D 302 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 6(CL 1-) FORMUL 11 HOH *604(H2 O) HELIX 1 1 GLU A 42 LYS A 57 1 16 HELIX 2 2 ASP A 59 ASP A 74 1 16 HELIX 3 3 ASN A 77 ILE A 91 1 15 HELIX 4 4 LEU A 93 ASP A 108 1 16 HELIX 5 5 SER A 111 ILE A 125 1 15 HELIX 6 6 GLU A 127 ASN A 142 1 16 HELIX 7 7 TYR A 145 MET A 159 1 15 HELIX 8 8 GLU A 161 LYS A 176 1 16 HELIX 9 9 PHE A 179 LYS A 193 1 15 HELIX 10 10 LEU A 195 LYS A 215 1 21 HELIX 11 11 THR B 43 LYS B 57 1 15 HELIX 12 12 ASP B 59 ASP B 74 1 16 HELIX 13 13 ASN B 77 ILE B 91 1 15 HELIX 14 14 LEU B 93 ASP B 108 1 16 HELIX 15 15 SER B 111 ILE B 125 1 15 HELIX 16 16 GLU B 127 ASN B 142 1 16 HELIX 17 17 TYR B 145 MET B 159 1 15 HELIX 18 18 GLU B 161 LYS B 176 1 16 HELIX 19 19 PHE B 179 LYS B 193 1 15 HELIX 20 20 LEU B 195 TYR B 216 1 22 HELIX 21 21 THR C 43 LYS C 57 1 15 HELIX 22 22 ASP C 59 ASP C 74 1 16 HELIX 23 23 ASN C 77 ILE C 91 1 15 HELIX 24 24 LEU C 93 ASP C 108 1 16 HELIX 25 25 SER C 111 ILE C 125 1 15 HELIX 26 26 GLU C 127 ASN C 142 1 16 HELIX 27 27 TYR C 145 MET C 159 1 15 HELIX 28 28 GLU C 161 LYS C 176 1 16 HELIX 29 29 PHE C 179 LYS C 193 1 15 HELIX 30 30 LEU C 195 GLU C 217 1 23 HELIX 31 31 ASP D 49 LYS D 57 1 9 HELIX 32 32 ASP D 59 ASP D 74 1 16 HELIX 33 33 ASN D 77 ILE D 91 1 15 HELIX 34 34 LEU D 93 ASP D 108 1 16 HELIX 35 35 SER D 111 ILE D 125 1 15 HELIX 36 36 GLU D 127 ASN D 142 1 16 HELIX 37 37 TYR D 145 MET D 159 1 15 HELIX 38 38 GLU D 161 LYS D 176 1 16 HELIX 39 39 PHE D 179 LYS D 193 1 15 HELIX 40 40 LEU D 195 TYR D 216 1 22 SITE 1 AC1 4 GLU A 161 ASP A 163 LYS A 164 HOH A 521 SITE 1 AC2 2 ALA B 112 ASN C 142 SITE 1 AC3 4 GLU B 161 HIS B 162 ASP B 163 LYS B 164 SITE 1 AC4 4 GLU C 161 ASP C 163 LYS C 164 HOH C 471 SITE 1 AC5 4 GLU D 161 ASP D 163 LYS D 164 HOH D 462 SITE 1 AC6 2 ILE D 180 ARG D 181 CRYST1 51.701 101.315 139.553 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007166 0.00000