HEADER HYDROLASE 04-JUL-12 3VUP TITLE BETA-1,4-MANNANASE FROM THE COMMON SEA HARE APLYSIA KURODAI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,4-MANNANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-369 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APLYSIA KURODAI; SOURCE 3 ORGANISM_COMMON: KURODA'S SEA HARE; SOURCE 4 ORGANISM_TAXID: 6501 KEYWDS TIM BARREL, BETA-1,4-MANNANASE, MANNAN, DIGESTIVE FLUID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MIZUTANI,S.TSUCHIYA,M.TOYODA,Y.NANBU,K.TOMINAGA,K.YUASA, AUTHOR 2 N.TAKAHASHI,A.TSUJI,B.MIKAMI REVDAT 1 17-OCT-12 3VUP 0 JRNL AUTH K.MIZUTANI,S.TSUCHIYA,M.TOYODA,Y.NANBU,K.TOMINAGA,K.YUASA, JRNL AUTH 2 N.TAKAHASHI,A.TSUJI,B.MIKAMI JRNL TITL STRUCTURE OF BETA-1,4-MANNANASE FROM THE COMMON SEA HARE JRNL TITL 2 APLYSIA KURODAI AT 1.05 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1164 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23027740 JRNL DOI 10.1107/S1744309112037074 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 291356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 14693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9572 - 3.2602 0.99 9955 496 0.1592 0.1746 REMARK 3 2 3.2602 - 2.5886 1.00 9677 491 0.1524 0.1629 REMARK 3 3 2.5886 - 2.2617 1.00 9598 510 0.1518 0.1702 REMARK 3 4 2.2617 - 2.0550 1.00 9526 499 0.1437 0.1583 REMARK 3 5 2.0550 - 1.9077 1.00 9503 540 0.1359 0.1521 REMARK 3 6 1.9077 - 1.7953 1.00 9504 500 0.1316 0.1438 REMARK 3 7 1.7953 - 1.7054 1.00 9411 523 0.1285 0.1448 REMARK 3 8 1.7054 - 1.6312 0.99 9401 524 0.1197 0.1372 REMARK 3 9 1.6312 - 1.5684 0.99 9403 483 0.1170 0.1411 REMARK 3 10 1.5684 - 1.5143 0.99 9334 508 0.1144 0.1343 REMARK 3 11 1.5143 - 1.4669 0.99 9331 472 0.1146 0.1426 REMARK 3 12 1.4669 - 1.4250 0.98 9316 484 0.1188 0.1443 REMARK 3 13 1.4250 - 1.3875 0.98 9251 487 0.1174 0.1436 REMARK 3 14 1.3875 - 1.3537 0.98 9276 488 0.1182 0.1419 REMARK 3 15 1.3537 - 1.3229 0.98 9243 505 0.1206 0.1523 REMARK 3 16 1.3229 - 1.2947 0.98 9208 496 0.1212 0.1620 REMARK 3 17 1.2947 - 1.2688 0.98 9188 481 0.1207 0.1446 REMARK 3 18 1.2688 - 1.2449 0.98 9214 496 0.1211 0.1503 REMARK 3 19 1.2449 - 1.2227 0.97 9148 470 0.1219 0.1462 REMARK 3 20 1.2227 - 1.2019 0.96 8983 492 0.1188 0.1428 REMARK 3 21 1.2019 - 1.1825 0.97 9161 492 0.1264 0.1601 REMARK 3 22 1.1825 - 1.1644 0.96 8990 483 0.1227 0.1451 REMARK 3 23 1.1644 - 1.1472 0.95 8931 496 0.1264 0.1506 REMARK 3 24 1.1472 - 1.1311 0.96 8995 475 0.1263 0.1460 REMARK 3 25 1.1311 - 1.1158 0.95 8893 473 0.1302 0.1579 REMARK 3 26 1.1158 - 1.1013 0.95 8982 458 0.1391 0.1692 REMARK 3 27 1.1013 - 1.0875 0.94 8782 460 0.1462 0.1715 REMARK 3 28 1.0875 - 1.0744 0.94 8833 492 0.1539 0.1814 REMARK 3 29 1.0744 - 1.0619 0.94 8806 482 0.1622 0.1891 REMARK 3 30 1.0619 - 1.0500 0.94 8820 437 0.1711 0.2024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 45.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28890 REMARK 3 B22 (A**2) : 0.94990 REMARK 3 B33 (A**2) : -1.23870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6248 REMARK 3 ANGLE : 1.252 8487 REMARK 3 CHIRALITY : 0.094 830 REMARK 3 PLANARITY : 0.006 1096 REMARK 3 DIHEDRAL : 13.254 2320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB095522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 292160 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 25.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M SODIUM SULFATE, REMARK 280 100MM TRIS-HCL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.04600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.04900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.04600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.04900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 118 O HOH B 685 2.07 REMARK 500 OE1 GLN B 198 O HOH B 662 2.11 REMARK 500 OG SER B 343 O HOH B 813 2.15 REMARK 500 O SER B 119 O HOH B 685 2.15 REMARK 500 NH2 ARG A 332 O HOH A 531 2.16 REMARK 500 NH1 ARG A 327 O3 SO4 A 404 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 26 -63.37 -106.84 REMARK 500 ILE A 63 -86.22 -107.13 REMARK 500 ILE A 65 -95.96 69.31 REMARK 500 THR A 69 -30.11 -132.95 REMARK 500 ASP A 83 -168.38 -162.21 REMARK 500 ASN A 116 78.47 -119.86 REMARK 500 ASP A 118 76.76 -57.30 REMARK 500 ALA A 140 -55.65 -127.06 REMARK 500 HIS A 323 69.88 78.89 REMARK 500 MET B 26 -62.55 -105.93 REMARK 500 ILE B 63 -85.99 -106.97 REMARK 500 ILE B 65 -97.12 69.58 REMARK 500 PRO B 71 -179.70 -68.55 REMARK 500 ASP B 83 -166.69 -160.59 REMARK 500 ASN B 116 72.33 -118.24 REMARK 500 ASP B 118 63.66 -68.56 REMARK 500 ASN B 121 35.30 39.87 REMARK 500 ALA B 140 -54.67 -128.77 REMARK 500 MET B 236 -167.12 -105.05 REMARK 500 HIS B 323 69.75 78.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 734 DISTANCE = 5.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 DBREF 3VUP A 1 351 UNP E5RSM0 E5RSM0_APLKU 19 369 DBREF 3VUP B 1 351 UNP E5RSM0 E5RSM0_APLKU 19 369 SEQRES 1 A 351 ARG LEU HIS ILE GLN ASN GLY HIS PHE VAL LEU ASN GLY SEQRES 2 A 351 GLN ARG VAL PHE LEU SER GLY GLY ASN LEU PRO TRP MET SEQRES 3 A 351 SER TYR ALA TYR ASP PHE GLY ASP GLY GLN TRP GLN ARG SEQRES 4 A 351 ASN LYS ASN ARG ILE GLU PRO GLU PHE LYS LYS LEU HIS SEQRES 5 A 351 ASP ALA GLY GLY ASN SER MET ARG LEU TRP ILE HIS ILE SEQRES 6 A 351 GLN GLY GLU THR THR PRO ALA PHE ASN ASP GLN GLY PHE SEQRES 7 A 351 VAL THR GLY PRO ASP LYS GLN GLY THR MET LEU ASP ASP SEQRES 8 A 351 MET LYS ASP LEU LEU ASP THR ALA LYS LYS TYR ASN ILE SEQRES 9 A 351 LEU VAL PHE PRO CYS LEU TRP ASN ALA ALA VAL ASN GLN SEQRES 10 A 351 ASP SER HIS ASN ARG LEU ASP GLY LEU ILE LYS ASP GLN SEQRES 11 A 351 HIS LYS LEU GLN SER TYR ILE ASP LYS ALA LEU LYS PRO SEQRES 12 A 351 ILE VAL ASN HIS VAL LYS GLY HIS VAL ALA LEU GLY GLY SEQRES 13 A 351 TRP ASP LEU MET ASN GLU PRO GLU GLY MET MET ILE PRO SEQRES 14 A 351 ASP LYS HIS ASN ALA GLU LYS CYS TYR ASP THR THR ALA SEQRES 15 A 351 LEU LYS ASN SER GLY ALA GLY TRP ALA GLY ASN LYS TYR SEQRES 16 A 351 LEU TYR GLN ASP ILE LEU ARG PHE LEU ASN TRP GLN ALA SEQRES 17 A 351 ASP ALA ILE LYS THR THR ASP PRO GLY ALA LEU VAL THR SEQRES 18 A 351 MET GLY VAL TRP ASN PRO LYS SER ASN THR ASP HIS PHE SEQRES 19 A 351 ASN MET ASN ASN HIS TYR SER ASP HIS CYS LEU ARG LEU SEQRES 20 A 351 ALA GLY GLY LYS GLN LYS GLY VAL PHE ASP PHE TYR GLN SEQRES 21 A 351 PHE HIS SER TYR SER TRP GLN GLY LYS TRP ASP GLU VAL SEQRES 22 A 351 ALA PRO PHE THR HIS GLN ALA SER ASP TYR GLY LEU HIS SEQRES 23 A 351 LYS PRO ILE VAL VAL GLY GLU PHE TRP GLU GLN ASP GLY SEQRES 24 A 351 GLY GLY MET THR ILE THR GLN MET PHE ASN TYR VAL TYR SEQRES 25 A 351 ASN HIS GLY TYR ALA GLY ALA TRP SER TRP HIS LEU VAL SEQRES 26 A 351 GLN ARG GLY ASP ASN GLN ARG LYS GLY ILE THR ASN ILE SEQRES 27 A 351 LYS ASP LYS THR SER ASN GLY LYS ILE PRO ILE SER LEU SEQRES 1 B 351 ARG LEU HIS ILE GLN ASN GLY HIS PHE VAL LEU ASN GLY SEQRES 2 B 351 GLN ARG VAL PHE LEU SER GLY GLY ASN LEU PRO TRP MET SEQRES 3 B 351 SER TYR ALA TYR ASP PHE GLY ASP GLY GLN TRP GLN ARG SEQRES 4 B 351 ASN LYS ASN ARG ILE GLU PRO GLU PHE LYS LYS LEU HIS SEQRES 5 B 351 ASP ALA GLY GLY ASN SER MET ARG LEU TRP ILE HIS ILE SEQRES 6 B 351 GLN GLY GLU THR THR PRO ALA PHE ASN ASP GLN GLY PHE SEQRES 7 B 351 VAL THR GLY PRO ASP LYS GLN GLY THR MET LEU ASP ASP SEQRES 8 B 351 MET LYS ASP LEU LEU ASP THR ALA LYS LYS TYR ASN ILE SEQRES 9 B 351 LEU VAL PHE PRO CYS LEU TRP ASN ALA ALA VAL ASN GLN SEQRES 10 B 351 ASP SER HIS ASN ARG LEU ASP GLY LEU ILE LYS ASP GLN SEQRES 11 B 351 HIS LYS LEU GLN SER TYR ILE ASP LYS ALA LEU LYS PRO SEQRES 12 B 351 ILE VAL ASN HIS VAL LYS GLY HIS VAL ALA LEU GLY GLY SEQRES 13 B 351 TRP ASP LEU MET ASN GLU PRO GLU GLY MET MET ILE PRO SEQRES 14 B 351 ASP LYS HIS ASN ALA GLU LYS CYS TYR ASP THR THR ALA SEQRES 15 B 351 LEU LYS ASN SER GLY ALA GLY TRP ALA GLY ASN LYS TYR SEQRES 16 B 351 LEU TYR GLN ASP ILE LEU ARG PHE LEU ASN TRP GLN ALA SEQRES 17 B 351 ASP ALA ILE LYS THR THR ASP PRO GLY ALA LEU VAL THR SEQRES 18 B 351 MET GLY VAL TRP ASN PRO LYS SER ASN THR ASP HIS PHE SEQRES 19 B 351 ASN MET ASN ASN HIS TYR SER ASP HIS CYS LEU ARG LEU SEQRES 20 B 351 ALA GLY GLY LYS GLN LYS GLY VAL PHE ASP PHE TYR GLN SEQRES 21 B 351 PHE HIS SER TYR SER TRP GLN GLY LYS TRP ASP GLU VAL SEQRES 22 B 351 ALA PRO PHE THR HIS GLN ALA SER ASP TYR GLY LEU HIS SEQRES 23 B 351 LYS PRO ILE VAL VAL GLY GLU PHE TRP GLU GLN ASP GLY SEQRES 24 B 351 GLY GLY MET THR ILE THR GLN MET PHE ASN TYR VAL TYR SEQRES 25 B 351 ASN HIS GLY TYR ALA GLY ALA TRP SER TRP HIS LEU VAL SEQRES 26 B 351 GLN ARG GLY ASP ASN GLN ARG LYS GLY ILE THR ASN ILE SEQRES 27 B 351 LYS ASP LYS THR SER ASN GLY LYS ILE PRO ILE SER LEU HET TRS A 401 8 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET TRS B 401 8 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETSYN TRS TRIS BUFFER FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 4 SO4 14(O4 S 2-) FORMUL 19 HOH *1179(H2 O) HELIX 1 1 GLY A 35 ALA A 54 1 20 HELIX 2 2 THR A 87 TYR A 102 1 16 HELIX 3 3 ASP A 118 HIS A 120 5 3 HELIX 4 4 ASN A 121 ASP A 129 1 9 HELIX 5 5 ASP A 129 ALA A 140 1 12 HELIX 6 6 ALA A 140 VAL A 148 1 9 HELIX 7 7 PRO A 163 MET A 167 5 5 HELIX 8 8 GLU A 175 ASP A 179 5 5 HELIX 9 9 THR A 180 LYS A 184 5 5 HELIX 10 10 LEU A 196 ASP A 215 1 20 HELIX 11 11 ASN A 226 ASN A 230 5 5 HELIX 12 12 SER A 241 GLY A 250 1 10 HELIX 13 13 ALA A 274 HIS A 278 5 5 HELIX 14 14 GLN A 279 GLY A 284 5 6 HELIX 15 15 TRP A 295 GLY A 299 5 5 HELIX 16 16 THR A 303 HIS A 314 1 12 HELIX 17 17 HIS A 323 LYS A 339 1 17 HELIX 18 18 GLY B 35 ALA B 54 1 20 HELIX 19 19 THR B 87 TYR B 102 1 16 HELIX 20 20 ASN B 121 ASP B 129 1 9 HELIX 21 21 ASP B 129 ALA B 140 1 12 HELIX 22 22 ALA B 140 VAL B 148 1 9 HELIX 23 23 PRO B 163 MET B 166 5 4 HELIX 24 24 GLU B 175 ASP B 179 5 5 HELIX 25 25 THR B 180 LYS B 184 5 5 HELIX 26 26 LEU B 196 ASP B 215 1 20 HELIX 27 27 ASN B 226 ASN B 230 5 5 HELIX 28 28 SER B 241 GLY B 250 1 10 HELIX 29 29 ALA B 274 HIS B 278 5 5 HELIX 30 30 GLN B 279 GLY B 284 5 6 HELIX 31 31 TRP B 295 GLY B 299 5 5 HELIX 32 32 THR B 303 HIS B 314 1 12 HELIX 33 33 HIS B 323 LYS B 339 1 17 SHEET 1 A 3 HIS A 3 GLN A 5 0 SHEET 2 A 3 HIS A 8 LEU A 11 -1 O VAL A 10 N HIS A 3 SHEET 3 A 3 GLN A 14 ARG A 15 -1 O GLN A 14 N LEU A 11 SHEET 1 B 9 LEU A 18 ASN A 22 0 SHEET 2 B 9 SER A 58 ILE A 65 1 O ARG A 60 N GLY A 21 SHEET 3 B 9 LEU A 105 ASN A 112 1 O CYS A 109 N ILE A 63 SHEET 4 B 9 TRP A 157 ASN A 161 1 O ASN A 161 N TRP A 111 SHEET 5 B 9 VAL A 220 VAL A 224 1 O THR A 221 N TRP A 157 SHEET 6 B 9 TYR A 259 HIS A 262 1 O GLN A 260 N VAL A 224 SHEET 7 B 9 ILE A 289 GLU A 293 1 O VAL A 290 N PHE A 261 SHEET 8 B 9 GLY A 318 TRP A 322 1 O GLY A 318 N VAL A 291 SHEET 9 B 9 LEU A 18 ASN A 22 1 N LEU A 18 O ALA A 319 SHEET 1 C 2 ALA A 72 PHE A 73 0 SHEET 2 C 2 VAL A 79 GLY A 81 -1 O THR A 80 N ALA A 72 SHEET 1 D 3 HIS B 3 GLN B 5 0 SHEET 2 D 3 HIS B 8 LEU B 11 -1 O VAL B 10 N HIS B 3 SHEET 3 D 3 GLN B 14 ARG B 15 -1 O GLN B 14 N LEU B 11 SHEET 1 E 9 LEU B 18 ASN B 22 0 SHEET 2 E 9 SER B 58 ILE B 65 1 O ARG B 60 N GLY B 21 SHEET 3 E 9 LEU B 105 ASN B 112 1 O CYS B 109 N ILE B 63 SHEET 4 E 9 TRP B 157 ASN B 161 1 O ASN B 161 N TRP B 111 SHEET 5 E 9 VAL B 220 VAL B 224 1 O THR B 221 N TRP B 157 SHEET 6 E 9 TYR B 259 HIS B 262 1 O GLN B 260 N VAL B 224 SHEET 7 E 9 ILE B 289 GLU B 293 1 O VAL B 290 N TYR B 259 SHEET 8 E 9 GLY B 318 TRP B 322 1 O GLY B 318 N VAL B 291 SHEET 9 E 9 LEU B 18 ASN B 22 1 N LEU B 18 O ALA B 319 SHEET 1 F 2 ALA B 72 PHE B 73 0 SHEET 2 F 2 VAL B 79 GLY B 81 -1 O THR B 80 N ALA B 72 SSBOND 1 CYS A 177 CYS A 244 1555 1555 2.04 SSBOND 2 CYS B 177 CYS B 244 1555 1555 2.04 CISPEP 1 LEU A 23 PRO A 24 0 -3.39 CISPEP 2 THR A 70 PRO A 71 0 -11.55 CISPEP 3 LEU B 23 PRO B 24 0 -4.76 CISPEP 4 THR B 70 PRO B 71 0 -12.57 SITE 1 AC1 9 TRP A 62 ASN A 161 GLU A 162 GLU A 293 SITE 2 AC1 9 TRP A 322 HOH A 534 HOH A 661 HOH A 754 SITE 3 AC1 9 HOH B 719 SITE 1 AC2 8 TYR A 259 LEU A 285 HIS A 286 LYS A 287 SITE 2 AC2 8 HOH A 525 HOH A 635 HOH A 807 HOH A 865 SITE 1 AC3 7 HIS A 172 LYS A 341 THR A 342 SER A 343 SITE 2 AC3 7 HOH A 606 HOH A 675 LYS B 253 SITE 1 AC4 8 TRP A 295 GLU A 296 GLN A 297 ARG A 327 SITE 2 AC4 8 ASN A 330 GLN A 331 HOH A 738 HOH B 780 SITE 1 AC5 9 ASP A 170 LYS A 171 HIS A 172 ASN A 337 SITE 2 AC5 9 HOH A 603 HOH A 654 HOH A 730 HOH A 952 SITE 3 AC5 9 HOH A1004 SITE 1 AC6 6 GLN A 134 LYS A 142 LYS A 251 HOH A 788 SITE 2 AC6 6 HIS B 314 HOH B 735 SITE 1 AC7 5 HIS A 243 ARG A 246 HOH A 656 HOH A 737 SITE 2 AC7 5 HOH A1012 SITE 1 AC8 5 ASN A 103 HIS A 131 SER A 350 HOH A1025 SITE 2 AC8 5 HOH A1084 SITE 1 AC9 10 TRP B 62 ASN B 161 GLU B 162 GLU B 293 SITE 2 AC9 10 TRP B 322 HOH B 538 HOH B 624 HOH B 670 SITE 3 AC9 10 HOH B 718 HOH B 904 SITE 1 BC1 10 TYR B 259 GLY B 284 LEU B 285 HIS B 286 SITE 2 BC1 10 LYS B 287 HOH B 541 HOH B 598 HOH B 613 SITE 3 BC1 10 HOH B 771 HOH B 970 SITE 1 BC2 9 LYS A 253 HIS B 172 LYS B 341 THR B 342 SITE 2 BC2 9 SER B 343 HOH B 813 HOH B 918 HOH B 956 SITE 3 BC2 9 HOH B 957 SITE 1 BC3 10 TRP B 295 GLU B 296 GLN B 297 ILE B 304 SITE 2 BC3 10 ARG B 327 ASN B 330 GLN B 331 HOH B 634 SITE 3 BC3 10 HOH B 679 HOH B 812 SITE 1 BC4 7 ASP B 170 LYS B 171 HIS B 172 HOH B 831 SITE 2 BC4 7 HOH B 845 HOH B 913 HOH B 931 SITE 1 BC5 7 TYR A 310 HIS A 314 GLN B 134 LYS B 142 SITE 2 BC5 7 LYS B 251 HOH B 783 HOH B 836 SITE 1 BC6 5 HIS B 243 ARG B 246 HOH B 661 HOH B 712 SITE 2 BC6 5 HOH B 986 SITE 1 BC7 7 ASN B 103 GLN B 130 HIS B 131 SER B 350 SITE 2 BC7 7 HOH B 926 HOH B 944 HOH B 945 CRYST1 110.092 114.098 51.138 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019555 0.00000