HEADER HYDROLASE 05-JUL-12 3VUS TITLE ESCHERICHIA COLI PGAB N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DEACETYLASE DOMAIN, UNP RESIDUES 42-309; COMPND 5 SYNONYM: PGA N-DEACETYLASE, POLY-BETA-1,6-GLCNAC N-DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1023, JW5142, PGAB, YCDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS POLY-BETA-1, 6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE, DEACETYLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NISHIYAMA,H.NOGUCHI,H.YOSHIDA,S.-Y.PARK,J.R.H.TAME REVDAT 4 20-MAR-24 3VUS 1 REMARK LINK REVDAT 3 22-NOV-17 3VUS 1 REMARK REVDAT 2 16-JAN-13 3VUS 1 JRNL REVDAT 1 14-NOV-12 3VUS 0 JRNL AUTH T.NISHIYAMA,H.NOGUCHI,H.YOSHIDA,S.Y.PARK,J.R.TAME JRNL TITL THE STRUCTURE OF THE DEACETYLASE DOMAIN OF ESCHERICHIA COLI JRNL TITL 2 PGAB, AN ENZYME REQUIRED FOR BIOFILM FORMATION: A CIRCULARLY JRNL TITL 3 PERMUTED MEMBER OF THE CARBOHYDRATE ESTERASE 4 FAMILY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 44 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23275162 JRNL DOI 10.1107/S0907444912042059 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 68347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4403 ; 0.027 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5976 ; 2.294 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;39.314 ;23.305 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;16.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.336 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3456 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000095525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-11; 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 93; 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A; BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000; 1.00938, 0.99957, REMARK 200 0.99321 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18M SODIUM ACETATE, 0.1M BIS-TRIS, REMARK 280 16%(W/V) PEG3350, PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.55700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 196 REMARK 465 THR A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 LEU A 200 REMARK 465 GLN B 42 REMARK 465 GLU B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 ASP B 63 REMARK 465 ASN B 195 REMARK 465 ALA B 196 REMARK 465 THR B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 LEU B 200 REMARK 465 GLN B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN B 401 OXT ACT B 402 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 137 CG TRP A 137 CD1 0.092 REMARK 500 TRP A 137 CE2 TRP A 137 CD2 0.087 REMARK 500 HIS A 184 CG HIS A 184 CD2 0.076 REMARK 500 HIS A 246 CG HIS A 246 CD2 0.073 REMARK 500 HIS B 46 CG HIS B 46 CD2 0.056 REMARK 500 TRP B 80 CE2 TRP B 80 CD2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU A 181 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 MET B 67 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP B 115 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 55 -119.01 -124.55 REMARK 500 GLU A 60 -97.33 -92.63 REMARK 500 ASP A 115 -27.43 93.95 REMARK 500 ARG A 177 17.21 57.18 REMARK 500 THR A 185 162.67 78.85 REMARK 500 ASN A 187 52.61 -159.26 REMARK 500 HIS A 189 70.48 -113.63 REMARK 500 THR A 273 -167.29 -112.72 REMARK 500 SER A 286 87.46 -154.24 REMARK 500 ASN A 294 31.19 71.13 REMARK 500 HIS B 55 -119.04 -122.21 REMARK 500 ASP B 115 -20.79 92.17 REMARK 500 ARG B 177 19.84 59.00 REMARK 500 THR B 185 165.61 72.77 REMARK 500 ASN B 187 54.84 -155.57 REMARK 500 HIS B 189 66.14 -111.66 REMARK 500 ALA B 214 55.73 31.07 REMARK 500 THR B 273 -162.68 -109.35 REMARK 500 SER B 286 88.31 -155.11 REMARK 500 ASN B 294 28.65 81.89 REMARK 500 THR B 307 -7.00 -54.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ACETATE (ACT) B 402 IS NOT FULLY OCCUPIED. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 115 OD1 REMARK 620 2 HIS A 184 NE2 89.3 REMARK 620 3 HIS A 189 NE2 96.7 91.3 REMARK 620 4 ACT A 402 O 105.0 97.8 156.5 REMARK 620 5 ACT A 402 OXT 169.7 95.2 92.4 65.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 115 OD1 REMARK 620 2 HIS B 184 NE2 83.1 REMARK 620 3 HIS B 189 NE2 87.3 86.1 REMARK 620 4 ACT B 402 O 170.5 92.2 84.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 403 DBREF 3VUS A 42 309 UNP P75906 PGAB_ECOLI 42 309 DBREF 3VUS B 42 309 UNP P75906 PGAB_ECOLI 42 309 SEQRES 1 A 268 GLN PRO TRP PRO HIS ASN GLY PHE VAL ALA ILE SER TRP SEQRES 2 A 268 HIS ASN VAL GLU ASP GLU ALA ALA ASP GLN ARG PHE MET SEQRES 3 A 268 SER VAL ARG THR SER ALA LEU ARG GLU GLN PHE ALA TRP SEQRES 4 A 268 LEU ARG GLU ASN GLY TYR GLN PRO VAL SER ILE ALA GLN SEQRES 5 A 268 ILE ARG GLU ALA HIS ARG GLY GLY LYS PRO LEU PRO GLU SEQRES 6 A 268 LYS ALA VAL VAL LEU THR PHE ASP ASP GLY TYR GLN SER SEQRES 7 A 268 PHE TYR THR ARG VAL PHE PRO ILE LEU GLN ALA PHE GLN SEQRES 8 A 268 TRP PRO ALA VAL TRP ALA PRO VAL GLY SER TRP VAL ASP SEQRES 9 A 268 THR PRO ALA ASP LYS GLN VAL LYS PHE GLY ASP GLU LEU SEQRES 10 A 268 VAL ASP ARG GLU TYR PHE ALA THR TRP GLN GLN VAL ARG SEQRES 11 A 268 GLU VAL ALA ARG SER ARG LEU VAL GLU LEU ALA SER HIS SEQRES 12 A 268 THR TRP ASN SER HIS TYR GLY ILE GLN ALA ASN ALA THR SEQRES 13 A 268 GLY SER LEU LEU PRO VAL TYR VAL ASN ARG ALA TYR PHE SEQRES 14 A 268 THR ASP HIS ALA ARG TYR GLU THR ALA ALA GLU TYR ARG SEQRES 15 A 268 GLU ARG ILE ARG LEU ASP ALA VAL LYS MET THR GLU TYR SEQRES 16 A 268 LEU ARG THR LYS VAL GLU VAL ASN PRO HIS VAL PHE VAL SEQRES 17 A 268 TRP PRO TYR GLY GLU ALA ASN GLY ILE ALA ILE GLU GLU SEQRES 18 A 268 LEU LYS LYS LEU GLY TYR ASP MET PHE PHE THR LEU GLU SEQRES 19 A 268 SER GLY LEU ALA ASN ALA SER GLN LEU ASP SER ILE PRO SEQRES 20 A 268 ARG VAL LEU ILE ALA ASN ASN PRO SER LEU LYS GLU PHE SEQRES 21 A 268 ALA GLN GLN ILE ILE THR VAL GLN SEQRES 1 B 268 GLN PRO TRP PRO HIS ASN GLY PHE VAL ALA ILE SER TRP SEQRES 2 B 268 HIS ASN VAL GLU ASP GLU ALA ALA ASP GLN ARG PHE MET SEQRES 3 B 268 SER VAL ARG THR SER ALA LEU ARG GLU GLN PHE ALA TRP SEQRES 4 B 268 LEU ARG GLU ASN GLY TYR GLN PRO VAL SER ILE ALA GLN SEQRES 5 B 268 ILE ARG GLU ALA HIS ARG GLY GLY LYS PRO LEU PRO GLU SEQRES 6 B 268 LYS ALA VAL VAL LEU THR PHE ASP ASP GLY TYR GLN SER SEQRES 7 B 268 PHE TYR THR ARG VAL PHE PRO ILE LEU GLN ALA PHE GLN SEQRES 8 B 268 TRP PRO ALA VAL TRP ALA PRO VAL GLY SER TRP VAL ASP SEQRES 9 B 268 THR PRO ALA ASP LYS GLN VAL LYS PHE GLY ASP GLU LEU SEQRES 10 B 268 VAL ASP ARG GLU TYR PHE ALA THR TRP GLN GLN VAL ARG SEQRES 11 B 268 GLU VAL ALA ARG SER ARG LEU VAL GLU LEU ALA SER HIS SEQRES 12 B 268 THR TRP ASN SER HIS TYR GLY ILE GLN ALA ASN ALA THR SEQRES 13 B 268 GLY SER LEU LEU PRO VAL TYR VAL ASN ARG ALA TYR PHE SEQRES 14 B 268 THR ASP HIS ALA ARG TYR GLU THR ALA ALA GLU TYR ARG SEQRES 15 B 268 GLU ARG ILE ARG LEU ASP ALA VAL LYS MET THR GLU TYR SEQRES 16 B 268 LEU ARG THR LYS VAL GLU VAL ASN PRO HIS VAL PHE VAL SEQRES 17 B 268 TRP PRO TYR GLY GLU ALA ASN GLY ILE ALA ILE GLU GLU SEQRES 18 B 268 LEU LYS LYS LEU GLY TYR ASP MET PHE PHE THR LEU GLU SEQRES 19 B 268 SER GLY LEU ALA ASN ALA SER GLN LEU ASP SER ILE PRO SEQRES 20 B 268 ARG VAL LEU ILE ALA ASN ASN PRO SER LEU LYS GLU PHE SEQRES 21 B 268 ALA GLN GLN ILE ILE THR VAL GLN HET ZN A 401 1 HET ACT A 402 4 HET ZN B 401 1 HET ACT B 402 4 HET HG B 403 1 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM HG MERCURY (II) ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HG HG 2+ FORMUL 8 HOH *175(H2 O) HELIX 1 1 ASP A 63 MET A 67 5 5 HELIX 2 2 THR A 71 ASN A 84 1 14 HELIX 3 3 SER A 90 ARG A 99 1 10 HELIX 4 4 TYR A 117 GLN A 132 1 16 HELIX 5 5 VAL A 140 ASP A 145 1 6 HELIX 6 6 ASP A 160 PHE A 164 5 5 HELIX 7 7 THR A 166 SER A 176 1 11 HELIX 8 8 PRO A 202 ASN A 206 5 5 HELIX 9 9 THR A 218 VAL A 241 1 24 HELIX 10 10 PRO A 251 GLU A 254 5 4 HELIX 11 11 ASN A 256 LEU A 266 1 11 HELIX 12 12 SER A 297 THR A 307 1 11 HELIX 13 13 THR B 71 ASN B 84 1 14 HELIX 14 14 SER B 90 ARG B 99 1 10 HELIX 15 15 TYR B 117 ARG B 123 1 7 HELIX 16 16 VAL B 124 GLN B 132 1 9 HELIX 17 17 VAL B 140 ASP B 145 1 6 HELIX 18 18 ASP B 160 PHE B 164 5 5 HELIX 19 19 THR B 166 SER B 176 1 11 HELIX 20 20 PRO B 202 ASN B 206 5 5 HELIX 21 21 THR B 218 VAL B 241 1 24 HELIX 22 22 PRO B 251 GLU B 254 5 4 HELIX 23 23 ASN B 256 LEU B 266 1 11 HELIX 24 24 SER B 297 THR B 307 1 11 SHEET 1 A 4 GLN A 87 PRO A 88 0 SHEET 2 A 4 ALA A 108 ASP A 115 1 O VAL A 109 N GLN A 87 SHEET 3 A 4 GLY A 48 TRP A 54 1 N TRP A 54 O ASP A 114 SHEET 4 A 4 ALA A 279 ASN A 280 -1 O ALA A 279 N PHE A 49 SHEET 1 B 5 VAL A 179 LEU A 181 0 SHEET 2 B 5 ALA A 135 PRO A 139 1 N TRP A 137 O GLU A 180 SHEET 3 B 5 ALA A 108 ASP A 115 1 N PHE A 113 O ALA A 138 SHEET 4 B 5 GLY A 48 TRP A 54 1 N TRP A 54 O ASP A 114 SHEET 5 B 5 VAL A 290 LEU A 291 1 O VAL A 290 N ALA A 51 SHEET 1 C 2 VAL A 57 GLU A 58 0 SHEET 2 C 2 VAL A 69 ARG A 70 1 O VAL A 69 N GLU A 58 SHEET 1 D 2 VAL A 152 PHE A 154 0 SHEET 2 D 2 GLU A 157 VAL A 159 -1 O VAL A 159 N VAL A 152 SHEET 1 E 2 TYR A 209 PHE A 210 0 SHEET 2 E 2 ARG A 215 TYR A 216 -1 O ARG A 215 N PHE A 210 SHEET 1 F 2 VAL A 247 VAL A 249 0 SHEET 2 F 2 MET A 270 PHE A 272 1 O MET A 270 N PHE A 248 SHEET 1 G 4 GLN B 87 PRO B 88 0 SHEET 2 G 4 ALA B 108 ASP B 115 1 O VAL B 109 N GLN B 87 SHEET 3 G 4 GLY B 48 TRP B 54 1 N TRP B 54 O ASP B 114 SHEET 4 G 4 ALA B 279 ASN B 280 -1 O ALA B 279 N PHE B 49 SHEET 1 H 5 VAL B 179 LEU B 181 0 SHEET 2 H 5 ALA B 135 PRO B 139 1 N ALA B 135 O GLU B 180 SHEET 3 H 5 ALA B 108 ASP B 115 1 N PHE B 113 O ALA B 138 SHEET 4 H 5 GLY B 48 TRP B 54 1 N TRP B 54 O ASP B 114 SHEET 5 H 5 VAL B 290 LEU B 291 1 O VAL B 290 N SER B 53 SHEET 1 I 2 VAL B 57 GLU B 58 0 SHEET 2 I 2 VAL B 69 ARG B 70 1 O VAL B 69 N GLU B 58 SHEET 1 J 2 VAL B 152 PHE B 154 0 SHEET 2 J 2 GLU B 157 VAL B 159 -1 O VAL B 159 N VAL B 152 SHEET 1 K 2 TYR B 209 PHE B 210 0 SHEET 2 K 2 ARG B 215 TYR B 216 -1 O ARG B 215 N PHE B 210 SHEET 1 L 2 VAL B 247 VAL B 249 0 SHEET 2 L 2 MET B 270 PHE B 272 1 O MET B 270 N PHE B 248 LINK OD1 ASP A 115 ZN ZN A 401 1555 1555 2.13 LINK NE2 HIS A 184 ZN ZN A 401 1555 1555 2.13 LINK NE2 HIS A 189 ZN ZN A 401 1555 1555 2.16 LINK ZN ZN A 401 O ACT A 402 1555 1555 1.95 LINK ZN ZN A 401 OXT ACT A 402 1555 1555 2.08 LINK NE2 HIS B 98 HG HG B 403 1555 1555 2.27 LINK OD1 ASP B 115 ZN ZN B 401 1555 1555 2.20 LINK NE2 HIS B 184 ZN ZN B 401 1555 1555 2.25 LINK NE2 HIS B 189 ZN ZN B 401 1555 1555 2.23 LINK ZN ZN B 401 O ACT B 402 1555 1555 2.10 SITE 1 AC1 4 ASP A 115 HIS A 184 HIS A 189 ACT A 402 SITE 1 AC2 10 HIS A 55 ASP A 114 ASP A 115 HIS A 184 SITE 2 AC2 10 HIS A 189 TRP A 250 PRO A 251 TYR A 252 SITE 3 AC2 10 ARG A 289 ZN A 401 SITE 1 AC3 5 HIS B 55 ASP B 115 HIS B 184 HIS B 189 SITE 2 AC3 5 ACT B 402 SITE 1 AC4 12 HIS B 55 ASP B 114 ASP B 115 HIS B 184 SITE 2 AC4 12 HIS B 189 TRP B 250 PRO B 251 TYR B 252 SITE 3 AC4 12 LEU B 274 ARG B 289 ZN B 401 HOH B 584 SITE 1 AC5 1 HIS B 98 CRYST1 39.559 53.114 144.170 90.00 95.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025279 0.000000 0.002321 0.00000 SCALE2 0.000000 0.018827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006965 0.00000