HEADER PROTEIN BINDING/METAL BINDING PROTEIN 09-JUL-12 3VUW TITLE CRYSTAL STRUCTURE OF A20 ZF7 IN COMPLEX WITH LINEAR UBIQUITIN, FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-C; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UBIQUITIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 3; COMPND 8 CHAIN: E, F, G; COMPND 9 FRAGMENT: A20-TYPE 7 ZINC FINGER DOMAIN, RESIDUES 757-789; COMPND 10 SYNONYM: TNF ALPHA-INDUCED PROTEIN 3, OTU DOMAIN-CONTAINING PROTEIN COMPND 11 7C, PUTATIVE DNA-BINDING PROTEIN A20, ZINC FINGER PROTEIN A20; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TNFAIP3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ZINC FINGER, CELLULAR SIGNALING, UBIQUITINATION, PROTEIN BINDING- KEYWDS 2 METAL BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NISHIMASU,R.ISHITANI,O.NUREKI REVDAT 2 20-MAR-24 3VUW 1 REMARK SEQADV LINK REVDAT 1 13-FEB-13 3VUW 0 JRNL AUTH F.TOKUNAGA,H.NISHIMASU,R.ISHITANI,E.GOTO,T.NOGUCHI,K.MIO, JRNL AUTH 2 K.KAMEI,A.MA,K.IWAI,O.NUREKI JRNL TITL SPECIFIC RECOGNITION OF LINEAR POLYUBIQUITIN BY A20 ZINC JRNL TITL 2 FINGER 7 IS INVOLVED IN NF-KAPPAB REGULATION JRNL REF EMBO J. V. 31 3856 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 23032187 JRNL DOI 10.1038/EMBOJ.2012.241 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 26354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5109 - 4.0552 0.98 2833 152 0.1632 0.1943 REMARK 3 2 4.0552 - 3.2191 0.99 2859 150 0.1680 0.2018 REMARK 3 3 3.2191 - 2.8123 0.98 2836 149 0.1896 0.2251 REMARK 3 4 2.8123 - 2.5552 0.97 2845 150 0.1799 0.2298 REMARK 3 5 2.5552 - 2.3721 0.97 2782 148 0.1828 0.2291 REMARK 3 6 2.3721 - 2.2323 0.97 2823 145 0.1875 0.2718 REMARK 3 7 2.2323 - 2.1205 0.96 2784 151 0.2035 0.2617 REMARK 3 8 2.1205 - 2.0282 0.96 2771 142 0.1962 0.2714 REMARK 3 9 2.0282 - 1.9501 0.87 2503 131 0.2202 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 48.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.08590 REMARK 3 B22 (A**2) : -5.72360 REMARK 3 B33 (A**2) : 0.63770 REMARK 3 B12 (A**2) : 1.24960 REMARK 3 B13 (A**2) : -0.79780 REMARK 3 B23 (A**2) : -7.23380 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2602 REMARK 3 ANGLE : 1.141 3493 REMARK 3 CHIRALITY : 0.078 385 REMARK 3 PLANARITY : 0.005 463 REMARK 3 DIHEDRAL : 16.207 1003 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.3574 -1.2583 -0.8419 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.2073 REMARK 3 T33: 0.2024 T12: -0.0280 REMARK 3 T13: 0.0042 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.1459 L22: 2.3930 REMARK 3 L33: 1.3319 L12: -0.6499 REMARK 3 L13: -0.2271 L23: 1.2260 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.0094 S13: 0.0233 REMARK 3 S21: -0.2457 S22: -0.0305 S23: -0.0037 REMARK 3 S31: -0.1221 S32: -0.0605 S33: -0.0110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000095529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.20000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS-HCL, 150MM NACL, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 GLY C 76 REMARK 465 GLY E 756 REMARK 465 PRO E 757 REMARK 465 PRO E 758 REMARK 465 GLY F 756 REMARK 465 PRO F 757 REMARK 465 GLY G 756 REMARK 465 PRO G 757 REMARK 465 PRO G 758 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CE NZ REMARK 470 LYS B 48 CE NZ REMARK 470 LYS B 63 CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 ARG C 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 60 CG OD1 ND2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 774 CE NZ REMARK 470 LYS G 774 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN F 776 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 134 O HOH C 136 1.84 REMARK 500 O HOH A 137 O HOH A 145 1.92 REMARK 500 O HOH B 113 O HOH B 153 1.92 REMARK 500 O HOH C 133 O HOH C 136 1.95 REMARK 500 O HOH B 131 O HOH F 915 1.96 REMARK 500 OH TYR G 789 O HOH G 903 2.04 REMARK 500 O HOH E 918 O HOH E 920 2.05 REMARK 500 O HOH B 142 O HOH B 145 2.07 REMARK 500 O SER B 20 O HOH B 120 2.10 REMARK 500 NZ LYS F 786 O HOH F 919 2.12 REMARK 500 O HOH C 117 O HOH C 123 2.13 REMARK 500 O HOH B 138 O HOH F 914 2.15 REMARK 500 OG SER B 20 O HOH B 118 2.16 REMARK 500 OD2 ASP E 768 O HOH E 917 2.16 REMARK 500 OH TYR E 789 O HOH E 915 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 8 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 766 -3.39 69.12 REMARK 500 ALA F 766 -0.44 70.20 REMARK 500 ALA G 766 -1.33 68.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 762 SG REMARK 620 2 CYS E 767 SG 112.3 REMARK 620 3 CYS E 779 SG 111.0 113.1 REMARK 620 4 CYS E 782 SG 111.9 112.1 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K E 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 762 O REMARK 620 2 ALA E 764 O 86.9 REMARK 620 3 CYS E 767 O 97.6 96.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 762 SG REMARK 620 2 CYS F 767 SG 111.7 REMARK 620 3 CYS F 779 SG 111.3 113.0 REMARK 620 4 CYS F 782 SG 115.1 108.5 96.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K F 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 762 O REMARK 620 2 ALA F 764 O 92.7 REMARK 620 3 CYS F 767 O 95.9 95.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 762 SG REMARK 620 2 CYS G 767 SG 110.4 REMARK 620 3 CYS G 779 SG 110.0 110.7 REMARK 620 4 CYS G 782 SG 113.1 111.0 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 762 O REMARK 620 2 ALA G 764 O 88.7 REMARK 620 3 CYS G 767 O 96.8 91.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K E 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K F 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN G 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K G 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VUX RELATED DB: PDB REMARK 900 RELATED ID: 3VUY RELATED DB: PDB DBREF 3VUW A 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 3VUW B 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 3VUW C 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 3VUW E 757 789 UNP P21580 TNAP3_HUMAN 757 789 DBREF 3VUW F 757 789 UNP P21580 TNAP3_HUMAN 757 789 DBREF 3VUW G 757 789 UNP P21580 TNAP3_HUMAN 757 789 SEQADV 3VUW GLY E 756 UNP P21580 EXPRESSION TAG SEQADV 3VUW GLY F 756 UNP P21580 EXPRESSION TAG SEQADV 3VUW GLY G 756 UNP P21580 EXPRESSION TAG SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 34 GLY PRO PRO LYS GLN ARG CYS ARG ALA PRO ALA CYS ASP SEQRES 2 E 34 HIS PHE GLY ASN ALA LYS CYS ASN GLY TYR CYS ASN GLU SEQRES 3 E 34 CYS PHE GLN PHE LYS GLN MET TYR SEQRES 1 F 34 GLY PRO PRO LYS GLN ARG CYS ARG ALA PRO ALA CYS ASP SEQRES 2 F 34 HIS PHE GLY ASN ALA LYS CYS ASN GLY TYR CYS ASN GLU SEQRES 3 F 34 CYS PHE GLN PHE LYS GLN MET TYR SEQRES 1 G 34 GLY PRO PRO LYS GLN ARG CYS ARG ALA PRO ALA CYS ASP SEQRES 2 G 34 HIS PHE GLY ASN ALA LYS CYS ASN GLY TYR CYS ASN GLU SEQRES 3 G 34 CYS PHE GLN PHE LYS GLN MET TYR HET ZN E 801 1 HET K E 802 1 HET ZN F 801 1 HET K F 802 1 HET ZN G 801 1 HET K G 802 1 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION FORMUL 7 ZN 3(ZN 2+) FORMUL 8 K 3(K 1+) FORMUL 13 HOH *202(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5 HELIX 4 4 THR B 22 GLY B 35 1 14 HELIX 5 5 PRO B 37 ASP B 39 5 3 HELIX 6 6 LEU B 56 ASN B 60 5 5 HELIX 7 7 THR C 22 GLY C 35 1 14 HELIX 8 8 PRO C 37 ASP C 39 5 3 HELIX 9 9 ASN E 772 ASN E 776 5 5 HELIX 10 10 CYS E 779 TYR E 789 1 11 HELIX 11 11 ASN F 772 ASN F 776 5 5 HELIX 12 12 CYS F 779 TYR F 789 1 11 HELIX 13 13 ASN G 772 ASN G 776 5 5 HELIX 14 14 CYS G 779 TYR G 789 1 11 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 B 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 B 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 C 5 THR C 12 GLU C 16 0 SHEET 2 C 5 GLN C 2 LYS C 6 -1 N ILE C 3 O LEU C 15 SHEET 3 C 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 C 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 C 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK SG CYS E 762 ZN ZN E 801 1555 1555 2.43 LINK O CYS E 762 K K E 802 1555 1555 2.51 LINK O ALA E 764 K K E 802 1555 1555 2.65 LINK SG CYS E 767 ZN ZN E 801 1555 1555 2.37 LINK O CYS E 767 K K E 802 1555 1555 2.64 LINK SG CYS E 779 ZN ZN E 801 1555 1555 2.47 LINK SG CYS E 782 ZN ZN E 801 1555 1555 2.36 LINK SG CYS F 762 ZN ZN F 801 1555 1555 2.40 LINK O CYS F 762 K K F 802 1555 1555 2.60 LINK O ALA F 764 K K F 802 1555 1555 2.56 LINK SG CYS F 767 ZN ZN F 801 1555 1555 2.45 LINK O CYS F 767 K K F 802 1555 1555 2.73 LINK SG CYS F 779 ZN ZN F 801 1555 1555 2.46 LINK SG CYS F 782 ZN ZN F 801 1555 1555 2.40 LINK SG CYS G 762 ZN ZN G 801 1555 1555 2.41 LINK O CYS G 762 K K G 802 1555 1555 2.70 LINK O ALA G 764 K K G 802 1555 1555 2.71 LINK SG CYS G 767 ZN ZN G 801 1555 1555 2.42 LINK O CYS G 767 K K G 802 1555 1555 2.75 LINK SG CYS G 779 ZN ZN G 801 1555 1555 2.45 LINK SG CYS G 782 ZN ZN G 801 1555 1555 2.48 SITE 1 AC1 4 CYS E 762 CYS E 767 CYS E 779 CYS E 782 SITE 1 AC2 3 CYS E 762 ALA E 764 CYS E 767 SITE 1 AC3 4 CYS F 762 CYS F 767 CYS F 779 CYS F 782 SITE 1 AC4 3 CYS F 762 ALA F 764 CYS F 767 SITE 1 AC5 4 CYS G 762 CYS G 767 CYS G 779 CYS G 782 SITE 1 AC6 3 CYS G 762 ALA G 764 CYS G 767 CRYST1 39.173 51.991 52.180 70.08 80.25 78.05 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025528 -0.005401 -0.002817 0.00000 SCALE2 0.000000 0.019660 -0.006571 0.00000 SCALE3 0.000000 0.000000 0.020502 0.00000