HEADER HYDROLASE 12-JUL-12 3VV2 TITLE CRYSTAL STRUCTURE OF COMPLEX FORM BETWEEN S324A-SUBTILISIN AND MUTANT TITLE 2 TKPRO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 94-422; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROPEPTIDE FROM TK-SUBTILISIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 25-93; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 11 ORGANISM_TAXID: 69014; SOURCE 12 STRAIN: KOD1; SOURCE 13 GENE: TK1675; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS-RIL KEYWDS HYDROLASE, PROTEOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.UEHARA,Y.UEDA,D.J.YOU,K.TAKANO,Y.KOGA,S.KANAYA REVDAT 2 08-NOV-23 3VV2 1 REMARK SEQADV LINK REVDAT 1 06-MAR-13 3VV2 0 JRNL AUTH R.UEHARA,Y.UEDA,D.J.YOU,Y.KOGA,S.KANAYA JRNL TITL ACCELERATED MATURATION OF TK-SUBTILISIN BY A LEU PRO JRNL TITL 2 MUTATION AT THE C-TERMINUS OF THE PROPEPTIDE, WHICH REDUCES JRNL TITL 3 THE BINDING OF THE PROPEPTIDE TO TK-SUBTILISIN JRNL REF FEBS J. V. 280 994 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23237738 JRNL DOI 10.1111/FEBS.12091 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 27383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2905 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3984 ; 1.823 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.764 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;39.390 ;25.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;14.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2228 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1920 ; 1.165 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3102 ; 1.856 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 2.866 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 878 ; 4.247 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000095535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Z30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 0.2M ZINC REMARK 280 ACETATE, 2% PEG4000, PH6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.52550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.02700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.29150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.02700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.52550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.29150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 70 REMARK 465 LYS A 71 REMARK 465 PRO A 72 REMARK 465 SER A 73 REMARK 465 TRP A 74 REMARK 465 LEU A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 -155.75 -157.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 84 OE1 REMARK 620 2 ASP A 124 OD1 154.5 REMARK 620 3 ASP A 124 OD2 151.6 53.9 REMARK 620 4 LEU A 164 O 81.9 85.0 110.6 REMARK 620 5 ASN A 166 OD1 78.4 80.3 124.5 92.4 REMARK 620 6 ILE A 168 O 89.9 98.5 81.1 167.1 76.2 REMARK 620 7 VAL A 170 O 90.3 110.9 65.9 87.1 168.7 103.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 GLN A 110 OE1 81.9 REMARK 620 3 ALA A 227 O 156.2 82.1 REMARK 620 4 GLU A 229 OE1 90.3 140.4 90.8 REMARK 620 5 GLU A 229 OE2 76.1 85.9 85.2 54.6 REMARK 620 6 HOH A1103 O 120.1 142.2 82.9 74.2 127.1 REMARK 620 7 HOH A1134 O 82.4 82.4 112.8 135.2 156.8 71.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD2 REMARK 620 2 ASP A 119 OD1 47.7 REMARK 620 3 ASP A 121 OD1 120.8 142.8 REMARK 620 4 ASP A 121 OD2 84.8 132.4 54.0 REMARK 620 5 ASP A 314 OD1 124.4 91.3 114.2 124.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 205 O REMARK 620 2 ASP A 208 OD1 84.0 REMARK 620 3 ASP A 208 OD2 126.0 42.0 REMARK 620 4 VAL A 210 O 92.0 107.6 104.0 REMARK 620 5 ASP A 226 OD2 95.3 77.4 75.0 171.6 REMARK 620 6 HOH A1107 O 90.3 168.8 142.3 82.1 93.6 REMARK 620 7 HOH A1189 O 174.8 93.5 51.5 93.1 79.7 91.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 214 OD2 83.6 REMARK 620 3 ASP A 216 OD1 88.5 74.5 REMARK 620 4 ILE A 218 O 94.3 157.4 82.9 REMARK 620 5 ASP A 222 OD1 169.5 91.1 81.4 87.1 REMARK 620 6 ASP A 225 OD2 97.7 119.5 165.1 83.1 92.9 REMARK 620 7 HOH A1188 O 103.6 62.0 132.6 139.6 81.6 59.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 214 OD2 44.6 REMARK 620 3 ASP A 216 OD2 99.0 77.8 REMARK 620 4 ASP A 222 OD1 110.5 78.9 104.9 REMARK 620 5 ASP A 222 OD2 116.1 115.2 141.0 48.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 LEU A 373 O 89.1 REMARK 620 3 PRO A 375 O 102.2 93.1 REMARK 620 4 GLY A 377 O 81.7 170.7 90.6 REMARK 620 5 ASP A 379 OD1 161.9 91.0 95.9 97.1 REMARK 620 6 HOH A1130 O 79.8 93.7 173.0 83.0 82.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z30 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEX FORM BETWEEN S324A-SUBTILISIN AND TKPRO DBREF 3VV2 A 70 398 UNP P58502 TKSU_PYRKO 94 422 DBREF 3VV2 B 1 69 UNP P58502 TKSU_PYRKO 25 93 SEQADV 3VV2 ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQADV 3VV2 PRO B 69 UNP P58502 LEU 93 ENGINEERED MUTATION SEQRES 1 A 329 GLY LYS PRO SER TRP LEU GLY GLY GLY SER THR GLN PRO SEQRES 2 A 329 ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL LYS ALA SEQRES 3 A 329 PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SER VAL SEQRES 4 A 329 ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP TYR ASP SEQRES 5 A 329 HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS VAL SER SEQRES 6 A 329 THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG ASP CYS SEQRES 7 A 329 ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE GLY THR SEQRES 8 A 329 ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL GLY VAL SEQRES 9 A 329 ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL LEU ASP SEQRES 10 A 329 ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA ILE GLY SEQRES 11 A 329 ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL ALA ASP SEQRES 12 A 329 LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO ASP ASP SEQRES 13 A 329 ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY GLY PRO SEQRES 14 A 329 ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE GLN ALA SEQRES 15 A 329 TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER GLY ASN SEQRES 16 A 329 GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA TYR PRO SEQRES 17 A 329 GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN ASP ASN SEQRES 18 A 329 ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SER ALA SEQRES 19 A 329 PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP ASP SER SEQRES 20 A 329 TYR GLU THR LEU MET GLY THR ALA MET ALA THR PRO HIS SEQRES 21 A 329 VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA TYR TYR SEQRES 22 A 329 GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR PHE ASP SEQRES 23 A 329 ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU HIS ILE SEQRES 24 A 329 THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP ALA ASP SEQRES 25 A 329 TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA VAL GLN SEQRES 26 A 329 ALA ALA LEU GLY SEQRES 1 B 69 GLY GLU GLN ASN THR ILE ARG VAL ILE VAL SER VAL ASP SEQRES 2 B 69 LYS ALA LYS PHE ASN PRO HIS GLU VAL LEU GLY ILE GLY SEQRES 3 B 69 GLY HIS ILE VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL SEQRES 4 B 69 VAL VAL ASP VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS SEQRES 5 B 69 LYS MET PRO GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN SEQRES 6 B 69 ALA VAL LEU PRO HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HET CL A1008 1 HET ZN B2001 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION FORMUL 3 CA 7(CA 2+) FORMUL 10 CL CL 1- FORMUL 11 ZN ZN 2+ FORMUL 12 HOH *109(H2 O) HELIX 1 1 PRO A 87 VAL A 93 1 7 HELIX 2 2 ALA A 95 TRP A 99 5 5 HELIX 3 3 LEU A 125 ALA A 127 5 3 HELIX 4 4 LEU A 136 LYS A 139 5 4 HELIX 5 5 LYS A 143 ALA A 148 1 6 HELIX 6 6 GLY A 152 ALA A 163 1 12 HELIX 7 7 TYR A 193 GLY A 206 1 14 HELIX 8 8 ASP A 241 ALA A 254 1 14 HELIX 9 9 GLY A 322 GLY A 346 1 25 HELIX 10 10 THR A 361 ALA A 370 1 10 HELIX 11 11 ARG A 388 GLY A 398 1 11 HELIX 12 12 LYS B 14 PHE B 17 5 4 HELIX 13 13 ASN B 18 GLY B 26 5 9 HELIX 14 14 PRO B 44 ASN B 46 5 3 HELIX 15 15 ALA B 47 LYS B 53 1 7 SHEET 1 A 7 ILE A 129 SER A 134 0 SHEET 2 A 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 A 7 GLN A 110 ASP A 115 1 N VAL A 113 O TYR A 180 SHEET 4 A 7 VAL A 230 MET A 233 1 O SER A 232 N ALA A 112 SHEET 5 A 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 A 7 VAL A 279 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 A 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SHEET 1 B 2 GLY A 191 SER A 192 0 SHEET 2 B 2 GLN B 65 ALA B 66 -1 O ALA B 66 N GLY A 191 SHEET 1 C 2 ILE A 308 TYR A 312 0 SHEET 2 C 2 SER A 316 LEU A 320 -1 O SER A 316 N TYR A 312 SHEET 1 D 4 HIS B 28 GLN B 32 0 SHEET 2 D 4 ALA B 38 VAL B 43 -1 O VAL B 40 N VAL B 30 SHEET 3 D 4 ILE B 6 VAL B 12 -1 N VAL B 10 O VAL B 39 SHEET 4 D 4 VAL B 57 PHE B 62 -1 O GLU B 61 N ILE B 9 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.10 LINK OE1 GLN A 84 CA CA A1005 1555 1555 2.46 LINK O VAL A 108 CA CA A1004 1555 1555 2.20 LINK OE1 GLN A 110 CA CA A1004 1555 1555 2.39 LINK OD2 ASP A 119 CA CA A1007 1555 1555 2.14 LINK OD1 ASP A 119 CA CA A1007 1555 1555 2.89 LINK OD1 ASP A 121 CA CA A1007 1555 1555 2.26 LINK OD2 ASP A 121 CA CA A1007 1555 1555 2.55 LINK OD1 ASP A 124 CA CA A1005 1555 1555 2.37 LINK OD2 ASP A 124 CA CA A1005 1555 1555 2.52 LINK O LEU A 164 CA CA A1005 1555 1555 2.35 LINK OD1 ASN A 166 CA CA A1005 1555 1555 2.48 LINK O ILE A 168 CA CA A1005 1555 1555 2.28 LINK O VAL A 170 CA CA A1005 1555 1555 2.35 LINK O LEU A 205 CA CA A1001 1555 1555 2.10 LINK OD1 ASP A 208 CA CA A1001 1555 1555 2.16 LINK OD2 ASP A 208 CA CA A1001 1555 1555 3.15 LINK O VAL A 210 CA CA A1001 1555 1555 1.96 LINK OD1 ASP A 212 CA CA A1002 1555 1555 2.38 LINK OD2 ASP A 214 CA CA A1002 1555 1555 2.32 LINK OD1 ASP A 214 CA CA A1003 1555 1555 2.04 LINK OD2 ASP A 214 CA CA A1003 1555 1555 3.03 LINK OD1 ASP A 216 CA CA A1002 1555 1555 2.40 LINK OD2 ASP A 216 CA CA A1003 1555 1555 2.01 LINK O ILE A 218 CA CA A1002 1555 1555 2.47 LINK OD1 ASP A 222 CA CA A1002 1555 1555 2.35 LINK OD1 ASP A 222 CA CA A1003 1555 1555 2.09 LINK OD2 ASP A 222 CA CA A1003 1555 1555 2.83 LINK OD2 ASP A 225 CA CA A1002 1555 1555 2.42 LINK OD2 ASP A 226 CA CA A1001 1555 1555 2.12 LINK O ALA A 227 CA CA A1004 1555 1555 2.41 LINK OE1 GLU A 229 CA CA A1004 1555 1555 2.28 LINK OE2 GLU A 229 CA CA A1004 1555 1555 2.43 LINK OD1 ASP A 314 CA CA A1007 1555 1555 2.35 LINK OD1 ASP A 372 CA CA A1006 1555 1555 2.20 LINK O LEU A 373 CA CA A1006 1555 1555 2.13 LINK O PRO A 375 CA CA A1006 1555 1555 2.31 LINK O GLY A 377 CA CA A1006 1555 1555 2.13 LINK OD1 ASP A 379 CA CA A1006 1555 1555 2.36 LINK CA CA A1001 O HOH A1107 1555 1555 2.11 LINK CA CA A1001 O HOH A1189 1555 1555 2.11 LINK CA CA A1002 O HOH A1188 1555 1555 2.79 LINK CA CA A1004 O HOH A1103 1555 1555 2.75 LINK CA CA A1004 O HOH A1134 1555 1555 2.39 LINK CA CA A1006 O HOH A1130 1555 1555 2.35 LINK OD2 ASP B 42 ZN ZN B2001 1555 1555 2.21 CISPEP 1 TYR A 272 PRO A 273 0 11.84 CISPEP 2 PRO A 313 ASP A 314 0 -4.14 SITE 1 AC1 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC1 6 HOH A1107 HOH A1189 SITE 1 AC2 8 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC2 8 ASP A 222 ASP A 225 CA A1003 HOH A1188 SITE 1 AC3 5 GLU A 91 ASP A 214 ASP A 216 ASP A 222 SITE 2 AC3 5 CA A1002 SITE 1 AC4 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC4 6 HOH A1103 HOH A1134 SITE 1 AC5 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC5 6 ILE A 168 VAL A 170 SITE 1 AC6 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 6 ASP A 379 HOH A1130 SITE 1 AC7 4 ASP A 119 ASP A 121 ASP A 314 ASP A 315 SITE 1 AC8 2 HIS B 28 ASP B 42 CRYST1 65.051 68.583 74.054 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013504 0.00000