HEADER LYASE 18-JUL-12 3VVB TITLE CRYSTAL STRUCTURE OF CAPSULAR POLYSACCHARIDE SYNTHESIZING ENZYME CAPE TITLE 2 FROM STAPHYLOCOCCUS AUREUS IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: CAPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ROSSMANN FOLD, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, CAPSULAR KEYWDS 2 POLYSACCHARIDE SYNTHESIS, OXIDASE, EPIMERASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAFUSA,J.M.CAAVEIRO,Y.TANAKA,K.TSUMOTO REVDAT 4 08-NOV-23 3VVB 1 REMARK SEQADV REVDAT 3 22-NOV-17 3VVB 1 REMARK REVDAT 2 29-JAN-14 3VVB 1 JRNL REVDAT 1 12-JUN-13 3VVB 0 JRNL AUTH T.MIYAFUSA,J.M.CAAVEIRO,Y.TANAKA,M.E.TANNER,K.TSUMOTO JRNL TITL CRYSTAL STRUCTURE OF THE CAPSULAR POLYSACCHARIDE JRNL TITL 2 SYNTHESIZING PROTEIN CAPE OF STAPHYLOCOCCUS AUREUS. JRNL REF BIOSCI.REP. V. 33 463 2013 JRNL REFN ISSN 0144-8463 JRNL PMID 23611437 JRNL DOI 10.1042/BSR20130017 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.618 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.345 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2239 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3025 ; 1.363 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 6.191 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;39.509 ;24.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;19.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.211 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1636 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 163 REMARK 3 RESIDUE RANGE : A 201 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): -41.1038 33.8221 -12.6939 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.4478 REMARK 3 T33: 0.2541 T12: -0.0306 REMARK 3 T13: -0.1279 T23: -0.0950 REMARK 3 L TENSOR REMARK 3 L11: 2.1077 L22: 5.1269 REMARK 3 L33: 3.9444 L12: 0.5353 REMARK 3 L13: 0.7262 L23: -1.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.2757 S12: -0.6358 S13: -0.2053 REMARK 3 S21: 0.7062 S22: -0.1341 S23: -0.8019 REMARK 3 S31: 0.3226 S32: 0.4972 S33: -0.1417 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 199 REMARK 3 RESIDUE RANGE : A 227 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5913 45.1598 -16.5607 REMARK 3 T TENSOR REMARK 3 T11: 0.3599 T22: 0.8245 REMARK 3 T33: 0.8051 T12: -0.1769 REMARK 3 T13: -0.0721 T23: -0.1439 REMARK 3 L TENSOR REMARK 3 L11: 7.5239 L22: 6.8117 REMARK 3 L33: 2.8970 L12: 0.6710 REMARK 3 L13: 0.1219 L23: -1.8413 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: 0.0174 S13: -0.1267 REMARK 3 S21: -0.6803 S22: -0.2033 S23: -1.2847 REMARK 3 S31: 0.1849 S32: 1.0302 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 283 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2156 37.8624 -15.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.5753 T22: 1.1343 REMARK 3 T33: 0.9448 T12: -0.0716 REMARK 3 T13: -0.1203 T23: -0.1235 REMARK 3 L TENSOR REMARK 3 L11: 9.0011 L22: 11.8278 REMARK 3 L33: 4.0561 L12: -4.6767 REMARK 3 L13: 0.3082 L23: -2.0965 REMARK 3 S TENSOR REMARK 3 S11: 0.4455 S12: -0.3836 S13: 0.2553 REMARK 3 S21: -0.5130 S22: -0.6948 S23: -2.2465 REMARK 3 S31: 0.8386 S32: 1.3473 S33: 0.2492 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 108.409 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80100 REMARK 200 R SYM FOR SHELL (I) : 0.80100 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 4G5H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM SUCCINATE, POTASSIUM FORMATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.89500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.89500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.89500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.89500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.89500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -62.59000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 108.40906 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -125.18000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -50.89500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -125.18000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -50.89500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -62.59000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 108.40906 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -50.89500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ASN A -19 REMARK 465 HIS A -18 REMARK 465 LYS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 ARG A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 VAL A 174 REMARK 465 ILE A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 PHE A 178 REMARK 465 ILE A 179 REMARK 465 ASP A 180 REMARK 465 LYS A 181 REMARK 465 ILE A 182 REMARK 465 LYS A 183 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 GLU A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 THR A 189 REMARK 465 ILE A 190 REMARK 465 THR A 191 REMARK 465 ASP A 192 REMARK 465 GLU A 240 REMARK 465 LEU A 241 REMARK 465 PHE A 242 REMARK 465 GLU A 243 REMARK 465 ALA A 244 REMARK 465 ASP A 245 REMARK 465 ASN A 246 REMARK 465 ALA A 247 REMARK 465 ILE A 248 REMARK 465 GLU A 249 REMARK 465 ILE A 250 REMARK 465 ILE A 251 REMARK 465 GLY A 252 REMARK 465 THR A 253 REMARK 465 ARG A 254 REMARK 465 HIS A 255 REMARK 465 GLY A 256 REMARK 465 GLU A 257 REMARK 465 LYS A 258 REMARK 465 LYS A 259 REMARK 465 ARG A 286 REMARK 465 ASP A 287 REMARK 465 LEU A 288 REMARK 465 ASN A 289 REMARK 465 TYR A 290 REMARK 465 SER A 291 REMARK 465 ASN A 292 REMARK 465 TYR A 293 REMARK 465 VAL A 294 REMARK 465 GLU A 295 REMARK 465 THR A 296 REMARK 465 GLY A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 ILE A 301 REMARK 465 THR A 302 REMARK 465 GLN A 303 REMARK 465 SER A 304 REMARK 465 ASN A 335 REMARK 465 ASP A 336 REMARK 465 TYR A 337 REMARK 465 LYS A 338 REMARK 465 ALA A 339 REMARK 465 SER A 340 REMARK 465 MET A 341 REMARK 465 ARG A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 12.85 -64.22 REMARK 500 SER A 27 -153.31 -77.65 REMARK 500 SER A 27 -152.34 -77.65 REMARK 500 ILE A 101 -61.20 -109.52 REMARK 500 ASN A 311 40.48 -141.99 REMARK 500 THR A 312 -169.05 -102.54 REMARK 500 HIS A 313 99.74 -60.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G5H RELATED DB: PDB REMARK 900 CAPE COMPLEXED WITH UDP-GLCNAC REMARK 900 RELATED ID: 3VVC RELATED DB: PDB DBREF 3VVB A 2 342 UNP Q7A2Y4 Q7A2Y4_STAAM 2 342 SEQADV 3VVB MET A -20 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB ASN A -19 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -18 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB LYS A -17 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -16 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -15 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -14 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -13 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -12 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB HIS A -11 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB SER A -10 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB SER A -9 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB GLY A -8 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB LEU A -7 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB VAL A -6 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB PRO A -5 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB ARG A -4 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB GLY A -3 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB SER A -2 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB ALA A -1 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB MET A 0 UNP Q7A2Y4 EXPRESSION TAG SEQADV 3VVB GLY A 1 UNP Q7A2Y4 EXPRESSION TAG SEQRES 1 A 363 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 363 LEU VAL PRO ARG GLY SER ALA MET GLY PHE ASP ASP LYS SEQRES 3 A 363 ILE LEU LEU ILE THR GLY GLY THR GLY SER PHE GLY ASN SEQRES 4 A 363 ALA VAL MET LYS ARG PHE LEU ASP SER ASN ILE LYS GLU SEQRES 5 A 363 ILE ARG ILE PHE SER ARG ASP GLU LYS LYS GLN ASP ASP SEQRES 6 A 363 ILE ARG LYS LYS TYR ASN ASN SER LYS LEU LYS PHE TYR SEQRES 7 A 363 ILE GLY ASP VAL ARG ASP SER GLN SER VAL GLU THR ALA SEQRES 8 A 363 MET ARG ASP VAL ASP TYR VAL PHE HIS ALA ALA ALA LEU SEQRES 9 A 363 LYS GLN VAL PRO SER CYS GLU PHE PHE PRO VAL GLU ALA SEQRES 10 A 363 VAL LYS THR ASN ILE ILE GLY THR GLU ASN VAL LEU GLN SEQRES 11 A 363 SER ALA ILE HIS GLN ASN VAL LYS LYS VAL ILE CYS LEU SEQRES 12 A 363 SER THR ASP LYS ALA ALA TYR PRO ILE ASN ALA MET GLY SEQRES 13 A 363 ILE SER LYS ALA MET MET GLU LYS VAL PHE VAL ALA LYS SEQRES 14 A 363 SER ARG ASN ILE ARG SER GLU GLN THR LEU ILE CYS GLY SEQRES 15 A 363 THR ARG TYR GLY ASN VAL MET ALA SER ARG GLY SER VAL SEQRES 16 A 363 ILE PRO LEU PHE ILE ASP LYS ILE LYS ALA GLY GLU PRO SEQRES 17 A 363 LEU THR ILE THR ASP PRO ASP MET THR ARG PHE LEU MET SEQRES 18 A 363 SER LEU GLU ASP ALA VAL GLU LEU VAL VAL HIS ALA PHE SEQRES 19 A 363 LYS HIS ALA GLU THR GLY ASP ILE MET VAL GLN LYS ALA SEQRES 20 A 363 PRO SER SER THR VAL GLY ASP LEU ALA THR ALA LEU LEU SEQRES 21 A 363 GLU LEU PHE GLU ALA ASP ASN ALA ILE GLU ILE ILE GLY SEQRES 22 A 363 THR ARG HIS GLY GLU LYS LYS ALA GLU THR LEU LEU THR SEQRES 23 A 363 ARG GLU GLU TYR ALA GLN CYS GLU ASP MET GLY ASP TYR SEQRES 24 A 363 PHE ARG VAL PRO ALA ASP SER ARG ASP LEU ASN TYR SER SEQRES 25 A 363 ASN TYR VAL GLU THR GLY ASN GLU LYS ILE THR GLN SER SEQRES 26 A 363 TYR GLU TYR ASN SER ASP ASN THR HIS ILE LEU THR VAL SEQRES 27 A 363 GLU GLU ILE LYS GLU LYS LEU LEU THR LEU GLU TYR VAL SEQRES 28 A 363 ARG ASN GLU LEU ASN ASP TYR LYS ALA SER MET ARG HET NAP A 500 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *3(H2 O) HELIX 1 1 GLY A 14 LEU A 25 1 12 HELIX 2 2 ASP A 38 ASN A 50 1 13 HELIX 3 3 ASP A 63 ARG A 72 1 10 HELIX 4 4 GLN A 85 PHE A 92 1 8 HELIX 5 5 PHE A 92 ILE A 101 1 10 HELIX 6 6 ILE A 101 GLN A 114 1 14 HELIX 7 7 LYS A 126 ALA A 128 5 3 HELIX 8 8 ASN A 132 ILE A 152 1 21 HELIX 9 9 SER A 201 ALA A 216 1 16 HELIX 10 10 THR A 230 ALA A 235 1 6 HELIX 11 11 THR A 265 CYS A 272 1 8 HELIX 12 12 ASP A 310 THR A 312 5 3 HELIX 13 13 THR A 316 LEU A 327 1 12 SHEET 1 A 9 LEU A 54 ILE A 58 0 SHEET 2 A 9 GLU A 31 SER A 36 1 N ILE A 34 O TYR A 57 SHEET 3 A 9 ILE A 6 THR A 10 1 N LEU A 7 O ARG A 33 SHEET 4 A 9 TYR A 76 HIS A 79 1 O TYR A 76 N LEU A 8 SHEET 5 A 9 LYS A 118 THR A 124 1 O LYS A 118 N VAL A 77 SHEET 6 A 9 LEU A 158 TYR A 164 1 O THR A 162 N SER A 123 SHEET 7 A 9 ILE A 221 GLN A 224 1 O MET A 222 N GLY A 161 SHEET 8 A 9 TYR A 278 VAL A 281 -1 O VAL A 281 N ILE A 221 SHEET 9 A 9 GLU A 273 ASP A 274 -1 N GLU A 273 O ARG A 280 SHEET 1 B 2 THR A 262 LEU A 264 0 SHEET 2 B 2 TYR A 307 ASN A 308 -1 O TYR A 307 N LEU A 263 SITE 1 AC1 23 GLY A 11 THR A 13 GLY A 14 SER A 15 SITE 2 AC1 23 PHE A 16 SER A 36 ARG A 37 ASP A 38 SITE 3 AC1 23 LYS A 40 LYS A 41 ASP A 60 VAL A 61 SITE 4 AC1 23 ALA A 80 ALA A 81 ALA A 82 LYS A 84 SITE 5 AC1 23 SER A 123 THR A 124 LYS A 138 TYR A 164 SITE 6 AC1 23 GLY A 165 ASN A 166 VAL A 167 CRYST1 125.180 125.180 101.790 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007989 0.004612 0.000000 0.00000 SCALE2 0.000000 0.009224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009824 0.00000