HEADER TRANSPORT PROTEIN/INHIBITOR 27-JUL-12 3VVQ OBSLTE 12-JUN-13 3VVQ 3WBN TITLE CRYSTAL STRUCTURE OF MATE IN COMPLEX WITH MAL6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARCHAEAL-TYPE TRANSPORTER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MACROCYCLIC PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MAL6; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 STRAIN: JCM 8422; SOURCE 5 GENE: PF0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SELECTED BY THE RAPID SYSTEM PROTOCOL KEYWDS MATE, MULTIDRUG TRANSPORTER, MACROCYCLIC PEPTIDE, TRANSPORT PROTEIN- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,R.ISHITANI,O.NUREKI REVDAT 2 12-JUN-13 3VVQ 1 OBSLTE REVDAT 1 03-APR-13 3VVQ 0 JRNL AUTH Y.TANAKA,C.J.HIPOLITO,A.D.MATUNARA,K.ITO,T.KURODA,T.HIGUCHI, JRNL AUTH 2 T.KATOH,H.E.KATO,M.HATTORI,K.KUMAZAKI,T.TSUKAZAKI, JRNL AUTH 3 R.ISHITANI,H.SUGA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR THE DRUG EXTRUSIONMECHANISMBY A MATE JRNL TITL 2 MULTIDRUG TRANSPORTER JRNL REF NATURE 2013 JRNL REFN ESSN 1476-4687 JRNL DOI 10.1038/NATURE12014 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 22890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6291 - 5.7861 0.99 1627 162 0.2290 0.2248 REMARK 3 2 5.7861 - 4.5964 1.00 1574 152 0.2217 0.2519 REMARK 3 3 4.5964 - 4.0164 0.86 1363 127 0.2033 0.2392 REMARK 3 4 4.0164 - 3.6497 1.00 1557 157 0.1999 0.2159 REMARK 3 5 3.6497 - 3.3884 1.00 1568 150 0.1975 0.2388 REMARK 3 6 3.3884 - 3.1887 0.99 1551 148 0.2136 0.2631 REMARK 3 7 3.1887 - 3.0292 0.99 1557 145 0.2095 0.2679 REMARK 3 8 3.0292 - 2.8974 0.99 1575 154 0.2181 0.2901 REMARK 3 9 2.8974 - 2.7859 0.99 1550 140 0.2141 0.2808 REMARK 3 10 2.7859 - 2.6898 0.99 1539 152 0.2121 0.3066 REMARK 3 11 2.6898 - 2.6057 0.99 1556 142 0.2147 0.2634 REMARK 3 12 2.6057 - 2.5313 0.99 1533 147 0.2271 0.2923 REMARK 3 13 2.5313 - 2.4647 0.84 1288 132 0.2353 0.2970 REMARK 3 14 2.4647 - 2.4045 0.68 1042 102 0.2267 0.2578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 54.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60910 REMARK 3 B22 (A**2) : 3.55460 REMARK 3 B33 (A**2) : -1.94550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.41530 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3603 REMARK 3 ANGLE : 0.827 4873 REMARK 3 CHIRALITY : 0.054 594 REMARK 3 PLANARITY : 0.004 588 REMARK 3 DIHEDRAL : 16.153 1259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:235) REMARK 3 ORIGIN FOR THE GROUP (A): 340.4598 -3.8491 27.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: -0.0193 REMARK 3 T33: 0.1350 T12: -0.0323 REMARK 3 T13: -0.0374 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.4979 L22: 0.8666 REMARK 3 L33: 1.4304 L12: 0.0288 REMARK 3 L13: -0.0987 L23: -0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0573 S13: -0.0555 REMARK 3 S21: 0.0608 S22: -0.0124 S23: -0.0695 REMARK 3 S31: -0.0359 S32: -0.0851 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 236:454) REMARK 3 ORIGIN FOR THE GROUP (A): 323.4090 -12.8910 16.7567 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.1103 REMARK 3 T33: 0.1154 T12: 0.0022 REMARK 3 T13: -0.0377 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.8886 L22: 0.5394 REMARK 3 L33: 1.1243 L12: 0.5351 REMARK 3 L13: -0.9924 L23: -0.3539 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: 0.1064 S13: -0.1329 REMARK 3 S21: -0.1252 S22: -0.0118 S23: 0.0193 REMARK 3 S31: 0.1419 S32: -0.0289 S33: 0.0549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B' AND (RESSEQ 0:4) REMARK 3 ORIGIN FOR THE GROUP (A): 315.1865 1.5836 34.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.5182 REMARK 3 T33: 0.3808 T12: -0.1588 REMARK 3 T13: 0.0962 T23: -0.0744 REMARK 3 L TENSOR REMARK 3 L11: 3.9193 L22: 0.3229 REMARK 3 L33: 8.8751 L12: -0.1535 REMARK 3 L13: -1.0984 L23: -1.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.4209 S13: 0.2217 REMARK 3 S21: -0.0042 S22: 0.4466 S23: 0.5125 REMARK 3 S31: -0.0409 S32: -1.0951 S33: -0.5186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): 306.9265 5.3349 25.0199 REMARK 3 T TENSOR REMARK 3 T11: 0.8376 T22: 0.8109 REMARK 3 T33: 1.1851 T12: 0.3413 REMARK 3 T13: -0.2030 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 0.6407 L22: 3.1628 REMARK 3 L33: 6.7782 L12: -1.1774 REMARK 3 L13: -2.0106 L23: 3.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: 1.8665 S13: 2.3767 REMARK 3 S21: -1.9024 S22: -0.1802 S23: 2.7943 REMARK 3 S31: -2.1606 S32: -2.0373 S33: 0.2689 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 10:14) REMARK 3 ORIGIN FOR THE GROUP (A): 314.1407 -2.5814 32.3342 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.5016 REMARK 3 T33: 0.3254 T12: -0.0953 REMARK 3 T13: 0.1246 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.4252 L22: 1.8954 REMARK 3 L33: 0.7921 L12: 1.2453 REMARK 3 L13: -1.2956 L23: -0.6164 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.2850 S13: 0.0229 REMARK 3 S21: -0.0042 S22: 0.0639 S23: 0.2258 REMARK 3 S31: 0.0304 S32: -0.2943 S33: -0.0754 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 15:17) REMARK 3 ORIGIN FOR THE GROUP (A): 316.7031 -6.9539 41.3834 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.5416 REMARK 3 T33: 0.1400 T12: -0.0526 REMARK 3 T13: -0.0138 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 7.7326 L22: 4.7772 REMARK 3 L33: 9.9946 L12: -6.0762 REMARK 3 L13: -4.9582 L23: 4.0277 REMARK 3 S TENSOR REMARK 3 S11: 0.3318 S12: 0.6012 S13: -0.0568 REMARK 3 S21: -0.7351 S22: -0.1494 S23: 0.0602 REMARK 3 S31: -0.1741 S32: -0.1870 S33: -0.1585 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB095559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.910 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 15.000 REMARK 200 R MERGE (I) : 0.23800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 100MM TRIS-HCL, 20MM REMARK 280 CACL2, 100MM NASCN, PH 8.0, LIPDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.36400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.91400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.36400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.91400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 455 REMARK 465 ALA A 456 REMARK 465 THR A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 LYS A 460 REMARK 465 ARG A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ARG A 22 CZ NH1 NH2 REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 311 CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 THR B 2 OG1 CG2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 6 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 368 -62.26 -142.25 REMARK 500 SER B 8 -129.71 -111.98 REMARK 500 LEU B 9 136.15 61.22 REMARK 500 LEU B 14 -121.67 -150.92 REMARK 500 PHE B 15 93.59 58.64 REMARK 500 PRO B 16 95.96 -47.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 14 PHE B 15 -128.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 501 REMARK 610 OLC A 502 REMARK 610 OLC A 503 REMARK 610 OLC A 504 REMARK 610 OLC A 505 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF MACROCYCLIC PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVN RELATED DB: PDB REMARK 900 RELATED ID: 3VVO RELATED DB: PDB REMARK 900 RELATED ID: 3VVP RELATED DB: PDB REMARK 900 RELATED ID: 3VVR RELATED DB: PDB REMARK 900 RELATED ID: 3VVS RELATED DB: PDB DBREF 3VVQ A 1 461 UNP Q8U2X0 Q8U2X0_PYRFU 1 461 DBREF 3VVQ B 0 17 PDB 3VVQ 3VVQ 0 17 SEQRES 1 A 461 MET SER GLU LYS THR THR LYS GLY VAL GLN LEU LEU ARG SEQRES 2 A 461 GLY ASP PRO LYS LYS ALA ILE VAL ARG LEU SER ILE PRO SEQRES 3 A 461 MET MET ILE GLY MET SER VAL GLN THR LEU TYR ASN LEU SEQRES 4 A 461 ALA ASP GLY ILE TRP VAL SER GLY LEU GLY PRO GLU SER SEQRES 5 A 461 LEU ALA ALA VAL GLY LEU PHE PHE PRO VAL PHE MET GLY SEQRES 6 A 461 ILE ILE ALA LEU ALA ALA GLY LEU GLY VAL GLY THR SER SEQRES 7 A 461 SER ALA ILE ALA ARG ARG ILE GLY ALA ARG ASP LYS GLU SEQRES 8 A 461 GLY ALA ASP ASN VAL ALA VAL HIS SER LEU ILE LEU SER SEQRES 9 A 461 LEU ILE LEU GLY VAL THR ILE THR ILE THR MET LEU PRO SEQRES 10 A 461 ALA ILE ASP SER LEU PHE ARG SER MET GLY ALA LYS GLY SEQRES 11 A 461 GLU ALA VAL GLU LEU ALA ILE GLU TYR ALA ARG VAL LEU SEQRES 12 A 461 LEU ALA GLY ALA PHE ILE ILE VAL PHE ASN ASN VAL GLY SEQRES 13 A 461 ASN GLY ILE LEU ARG GLY GLU GLY ASP ALA ASN ARG ALA SEQRES 14 A 461 MET LEU ALA MET VAL LEU GLY SER GLY LEU ASN ILE VAL SEQRES 15 A 461 LEU ASP PRO ILE PHE ILE TYR THR LEU GLY PHE GLY VAL SEQRES 16 A 461 VAL GLY ALA ALA TYR ALA THR LEU LEU SER MET VAL VAL SEQRES 17 A 461 THR SER LEU PHE ILE ALA TYR TRP LEU PHE VAL LYS ARG SEQRES 18 A 461 ASP THR TYR VAL ASP ILE THR LEU ARG ASP PHE SER PRO SEQRES 19 A 461 SER ARG GLU ILE LEU LYS ASP ILE LEU ARG VAL GLY LEU SEQRES 20 A 461 PRO SER SER LEU SER GLN LEU SER MET SER ILE ALA MET SEQRES 21 A 461 PHE PHE LEU ASN SER VAL ALA ILE THR ALA GLY GLY GLU SEQRES 22 A 461 ASN GLY VAL ALA VAL PHE THR SER ALA TRP ARG ILE THR SEQRES 23 A 461 MET LEU GLY ILE VAL PRO ILE LEU GLY MET ALA ALA ALA SEQRES 24 A 461 THR THR SER VAL THR GLY ALA ALA TYR GLY GLU ARG ASN SEQRES 25 A 461 VAL GLU LYS LEU GLU THR ALA TYR LEU TYR ALA ILE LYS SEQRES 26 A 461 ILE ALA PHE MET ILE GLU LEU ALA VAL VAL ALA PHE ILE SEQRES 27 A 461 MET LEU PHE ALA PRO GLN VAL ALA TYR LEU PHE THR TYR SEQRES 28 A 461 SER GLU SER ALA GLN VAL ILE LYS GLY ASP LEU ILE SER SEQRES 29 A 461 ALA LEU ARG THR LEU PRO VAL PHE LEU VAL LEU THR PRO SEQRES 30 A 461 PHE GLY MET MET THR SER ALA MET PHE GLN GLY ILE GLY SEQRES 31 A 461 GLU GLY GLU LYS SER LEU ILE LEU THR ILE PHE ARG THR SEQRES 32 A 461 LEU VAL MET GLN VAL GLY PHE ALA TYR ILE PHE VAL HIS SEQRES 33 A 461 TYR THR THR LEU GLY LEU ARG GLY VAL TRP ILE GLY ILE SEQRES 34 A 461 VAL ILE GLY ASN MET VAL ALA ALA ILE VAL GLY PHE LEU SEQRES 35 A 461 TRP GLY ARG MET ARG ILE SER ALA LEU LYS LYS THR SER SEQRES 36 A 461 ALA THR GLY GLY LYS ARG SEQRES 1 B 18 ACE PHE THR PHE ARG TYR SER PRO SER LEU TYR THR TRP SEQRES 2 B 18 PHE LEU PHE PRO CYS HET ACE B 0 3 HET OLC A 501 12 HET OLC A 502 10 HET OLC A 503 17 HET OLC A 504 12 HET OLC A 505 11 HETNAM ACE ACETYL GROUP HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 ACE C2 H4 O FORMUL 3 OLC 5(C21 H40 O4) FORMUL 8 HOH *61(H2 O) HELIX 1 1 THR A 6 ARG A 13 1 8 HELIX 2 2 ASP A 15 GLY A 47 1 33 HELIX 3 3 GLY A 49 ALA A 87 1 39 HELIX 4 4 ASP A 89 LEU A 116 1 28 HELIX 5 5 ALA A 118 SER A 125 1 8 HELIX 6 6 GLY A 130 ALA A 145 1 16 HELIX 7 7 GLY A 146 GLU A 163 1 18 HELIX 8 8 ASP A 165 TYR A 189 1 25 HELIX 9 9 GLY A 194 VAL A 219 1 26 HELIX 10 10 SER A 235 GLY A 271 1 37 HELIX 11 11 GLY A 272 MET A 287 1 16 HELIX 12 12 ILE A 290 GLU A 310 1 21 HELIX 13 13 ASN A 312 PHE A 341 1 30 HELIX 14 14 PHE A 341 PHE A 349 1 9 HELIX 15 15 GLU A 353 VAL A 357 5 5 HELIX 16 16 ILE A 358 ARG A 367 1 10 HELIX 17 17 THR A 368 VAL A 374 5 7 HELIX 18 18 LEU A 375 ILE A 389 1 15 HELIX 19 19 GLU A 391 LEU A 404 1 14 HELIX 20 20 MET A 406 THR A 418 1 13 HELIX 21 21 GLY A 421 LYS A 453 1 33 SHEET 1 A 2 THR B 2 ARG B 4 0 SHEET 2 A 2 TYR B 10 TRP B 12 -1 O THR B 11 N PHE B 3 LINK CH3 ACE B 0 SG CYS B 17 1555 1555 1.82 LINK C ACE B 0 N PHE B 1 1555 1555 1.34 CISPEP 1 PRO B 7 SER B 8 0 -4.77 SITE 1 AC1 9 PHE A 262 SER A 265 VAL A 266 THR A 269 SITE 2 AC1 9 VAL A 408 TYR A 412 VAL A 415 HIS A 416 SITE 3 AC1 9 LEU B 9 SITE 1 AC2 2 PHE A 152 LEU A 211 SITE 1 AC3 3 ILE A 106 THR A 110 PHE A 232 SITE 1 AC4 8 MET A 27 ASN A 153 ASN A 154 ASN A 157 SITE 2 AC4 8 ALA A 172 MET A 173 ILE A 213 OLC A 505 SITE 1 AC5 11 TYR A 37 ILE A 150 ASN A 153 ASN A 154 SITE 2 AC5 11 GLY A 176 SER A 177 ASN A 180 SER A 205 SITE 3 AC5 11 MET A 206 THR A 209 OLC A 504 SITE 1 AC6 14 PRO A 50 LEU A 53 ALA A 54 GLY A 57 SITE 2 AC6 14 LEU A 58 PRO A 61 ILE A 258 PHE A 261 SITE 3 AC6 14 PHE A 262 ASN A 264 SER A 265 ILE A 268 SITE 4 AC6 14 VAL A 276 OLC A 501 CRYST1 152.728 59.828 68.034 90.00 91.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006548 0.000000 0.000154 0.00000 SCALE2 0.000000 0.016715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014703 0.00000