HEADER TRANSPORT PROTEIN/INHIBITOR 27-JUL-12 3VVR TITLE CRYSTAL STRUCTURE OF MATE IN COMPLEX WITH MAD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARCHAEAL-TYPE TRANSPORTER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MACROCYCLIC PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MAD5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 STRAIN: JCM 8422; SOURCE 5 GENE: PF0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SELECTED BY THE RAPID SYSTEM PROTOCOL KEYWDS MATE, MULTIDRUG TRANSPORTER, MACROCYCLIC PEPTIDE, TRANSPORT PROTEIN, KEYWDS 2 TRANSPORT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,R.ISHITANI,O.NUREKI REVDAT 3 08-NOV-23 3VVR 1 REMARK LINK REVDAT 2 29-JAN-14 3VVR 1 JRNL REVDAT 1 03-APR-13 3VVR 0 JRNL AUTH Y.TANAKA,C.J.HIPOLITO,A.D.MATURANA,K.ITO,T.KURODA,T.HIGUCHI, JRNL AUTH 2 T.KATOH,H.E.KATO,M.HATTORI,K.KUMAZAKI,T.TSUKAZAKI, JRNL AUTH 3 R.ISHITANI,H.SUGA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR THE DRUG EXTRUSION MECHANISM BY A MATE JRNL TITL 2 MULTIDRUG TRANSPORTER. JRNL REF NATURE V. 496 247 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23535598 JRNL DOI 10.1038/NATURE12014 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6278 - 6.2332 0.99 1337 152 0.2178 0.2675 REMARK 3 2 6.2332 - 4.9505 1.00 1302 144 0.2784 0.3151 REMARK 3 3 4.9505 - 4.3256 0.95 1244 138 0.2496 0.2838 REMARK 3 4 4.3256 - 3.9305 1.00 1291 142 0.2341 0.2915 REMARK 3 5 3.9305 - 3.6490 1.00 1294 140 0.2608 0.2796 REMARK 3 6 3.6490 - 3.4340 1.00 1279 142 0.2810 0.3295 REMARK 3 7 3.4340 - 3.2621 1.00 1279 139 0.3193 0.3904 REMARK 3 8 3.2621 - 3.1201 1.00 1285 137 0.3484 0.3695 REMARK 3 9 3.1201 - 3.0000 0.99 1276 142 0.3803 0.4112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 39.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.41180 REMARK 3 B22 (A**2) : -13.50800 REMARK 3 B33 (A**2) : -7.90370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 12.01680 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3260 REMARK 3 ANGLE : 0.726 4420 REMARK 3 CHIRALITY : 0.046 548 REMARK 3 PLANARITY : 0.003 541 REMARK 3 DIHEDRAL : 13.550 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:126) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4986 0.7151 23.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2250 REMARK 3 T33: 0.1352 T12: 0.0275 REMARK 3 T13: 0.0560 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.8478 L22: 1.6437 REMARK 3 L33: 0.0862 L12: 0.2737 REMARK 3 L13: 1.1364 L23: 0.1829 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0622 S13: -0.0539 REMARK 3 S21: -0.6378 S22: 0.0566 S23: 0.1984 REMARK 3 S31: -0.2053 S32: -0.1864 S33: 0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 127:235) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3104 1.5331 31.4700 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.0948 REMARK 3 T33: 0.1413 T12: -0.0241 REMARK 3 T13: 0.0247 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7984 L22: 2.2211 REMARK 3 L33: 0.4681 L12: -1.0359 REMARK 3 L13: 0.4668 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.0154 S13: -0.0423 REMARK 3 S21: 0.1170 S22: 0.1856 S23: -0.2280 REMARK 3 S31: -0.0811 S32: 0.0953 S33: 0.0226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 236:340) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3369 -6.9063 16.5833 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2815 REMARK 3 T33: 0.3364 T12: -0.0689 REMARK 3 T13: 0.0212 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.0365 L22: 0.2474 REMARK 3 L33: 0.3310 L12: -0.1249 REMARK 3 L13: 0.1157 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: -0.2099 S12: -0.0503 S13: -0.0659 REMARK 3 S21: -0.1788 S22: 0.0988 S23: 0.2315 REMARK 3 S31: 0.0037 S32: -0.1440 S33: -0.0273 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 341:454) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2375 -8.4646 14.9416 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.5877 REMARK 3 T33: 0.4203 T12: -0.0661 REMARK 3 T13: -0.1641 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.4273 L22: 1.3881 REMARK 3 L33: 0.8945 L12: -1.2135 REMARK 3 L13: -0.6904 L23: 1.1010 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.2929 S13: -0.2494 REMARK 3 S21: -0.2644 S22: -0.1345 S23: 0.1440 REMARK 3 S31: 0.2083 S32: -0.5327 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 28.7024 -3.6448 28.2392 REMARK 3 T TENSOR REMARK 3 T11: 1.4322 T22: 0.8910 REMARK 3 T33: 1.0534 T12: 0.2459 REMARK 3 T13: 0.2316 T23: 0.3198 REMARK 3 L TENSOR REMARK 3 L11: 0.0064 L22: 0.0578 REMARK 3 L33: 0.0081 L12: 0.0140 REMARK 3 L13: 0.0036 L23: 0.0435 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: 0.0243 S13: 0.0054 REMARK 3 S21: 0.1535 S22: 0.3169 S23: -0.1947 REMARK 3 S31: 0.4601 S32: 0.0484 S33: -0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.910 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12863 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.23600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 100MM HEPES-NAOH, 100MM REMARK 280 NASCN, PH 7.0, LIPDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.26050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.79950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.26050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.79950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 271 REMARK 465 SER A 352 REMARK 465 GLU A 353 REMARK 465 SER A 354 REMARK 465 ALA A 355 REMARK 465 GLN A 356 REMARK 465 VAL A 357 REMARK 465 TYR A 417 REMARK 465 THR A 418 REMARK 465 THR A 419 REMARK 465 LEU A 420 REMARK 465 SER A 455 REMARK 465 ALA A 456 REMARK 465 THR A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 LYS A 460 REMARK 465 ARG A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 THR A 5 OG1 CG2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ARG A 22 CZ NH1 NH2 REMARK 470 SER A 46 OG REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LEU A 53 CD1 CD2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 PHE A 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 SER A 121 OG REMARK 470 PHE A 123 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 VAL A 133 CG1 CG2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ILE A 137 CG1 CG2 CD1 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 ARG A 230 CZ NH1 NH2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 LYS A 240 CE NZ REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 SER A 255 OG REMARK 470 MET A 256 CG SD CE REMARK 470 ILE A 258 CG1 CG2 CD1 REMARK 470 ASN A 264 CG OD1 ND2 REMARK 470 SER A 265 OG REMARK 470 VAL A 266 CG1 CG2 REMARK 470 ILE A 268 CG1 CG2 CD1 REMARK 470 THR A 269 OG1 CG2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 VAL A 276 CG1 CG2 REMARK 470 THR A 280 OG1 CG2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 VAL A 345 CG1 CG2 REMARK 470 LEU A 348 CG CD1 CD2 REMARK 470 THR A 350 OG1 CG2 REMARK 470 TYR A 351 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 ASP A 361 CG OD1 OD2 REMARK 470 SER A 364 OG REMARK 470 ARG A 367 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 375 CG CD1 CD2 REMARK 470 LEU A 404 CG CD1 CD2 REMARK 470 VAL A 405 CG1 CG2 REMARK 470 ILE A 413 CG1 CG2 CD1 REMARK 470 PHE A 414 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 415 CG1 CG2 REMARK 470 HIS A 416 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 422 CG CD1 CD2 REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 425 CG1 CG2 REMARK 470 ILE A 427 CG1 CG2 CD1 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 THR A 454 OG1 CG2 REMARK 470 VAL B 2 CG1 CG2 REMARK 470 SER B 4 OG REMARK 470 VAL B 6 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 165 59.90 -92.69 REMARK 500 VAL A 219 -60.17 -102.58 REMARK 500 PRO A 234 109.71 -55.39 REMARK 500 PHE A 341 39.09 -96.13 REMARK 500 LEU A 366 5.24 -69.06 REMARK 500 ALA B 5 -173.20 58.67 REMARK 500 CYS B 7 85.04 57.23 REMARK 500 ALA B 10 102.96 -178.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 501 REMARK 610 OLC A 502 REMARK 610 OLC A 503 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF MACROCYCLIC PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVN RELATED DB: PDB REMARK 900 RELATED ID: 3VVO RELATED DB: PDB REMARK 900 RELATED ID: 3VVP RELATED DB: PDB REMARK 900 RELATED ID: 3VVQ RELATED DB: PDB REMARK 900 RELATED ID: 3VVS RELATED DB: PDB DBREF 3VVR A 1 461 UNP Q8U2X0 Q8U2X0_PYRFU 1 461 DBREF 3VVR B 0 11 PDB 3VVR 3VVR 0 11 SEQRES 1 A 461 MET SER GLU LYS THR THR LYS GLY VAL GLN LEU LEU ARG SEQRES 2 A 461 GLY ASP PRO LYS LYS ALA ILE VAL ARG LEU SER ILE PRO SEQRES 3 A 461 MET MET ILE GLY MET SER VAL GLN THR LEU TYR ASN LEU SEQRES 4 A 461 ALA ASP GLY ILE TRP VAL SER GLY LEU GLY PRO GLU SER SEQRES 5 A 461 LEU ALA ALA VAL GLY LEU PHE PHE PRO VAL PHE MET GLY SEQRES 6 A 461 ILE ILE ALA LEU ALA ALA GLY LEU GLY VAL GLY THR SER SEQRES 7 A 461 SER ALA ILE ALA ARG ARG ILE GLY ALA ARG ASP LYS GLU SEQRES 8 A 461 GLY ALA ASP ASN VAL ALA VAL HIS SER LEU ILE LEU SER SEQRES 9 A 461 LEU ILE LEU GLY VAL THR ILE THR ILE THR MET LEU PRO SEQRES 10 A 461 ALA ILE ASP SER LEU PHE ARG SER MET GLY ALA LYS GLY SEQRES 11 A 461 GLU ALA VAL GLU LEU ALA ILE GLU TYR ALA ARG VAL LEU SEQRES 12 A 461 LEU ALA GLY ALA PHE ILE ILE VAL PHE ASN ASN VAL GLY SEQRES 13 A 461 ASN GLY ILE LEU ARG GLY GLU GLY ASP ALA ASN ARG ALA SEQRES 14 A 461 MET LEU ALA MET VAL LEU GLY SER GLY LEU ASN ILE VAL SEQRES 15 A 461 LEU ASP PRO ILE PHE ILE TYR THR LEU GLY PHE GLY VAL SEQRES 16 A 461 VAL GLY ALA ALA TYR ALA THR LEU LEU SER MET VAL VAL SEQRES 17 A 461 THR SER LEU PHE ILE ALA TYR TRP LEU PHE VAL LYS ARG SEQRES 18 A 461 ASP THR TYR VAL ASP ILE THR LEU ARG ASP PHE SER PRO SEQRES 19 A 461 SER ARG GLU ILE LEU LYS ASP ILE LEU ARG VAL GLY LEU SEQRES 20 A 461 PRO SER SER LEU SER GLN LEU SER MET SER ILE ALA MET SEQRES 21 A 461 PHE PHE LEU ASN SER VAL ALA ILE THR ALA GLY GLY GLU SEQRES 22 A 461 ASN GLY VAL ALA VAL PHE THR SER ALA TRP ARG ILE THR SEQRES 23 A 461 MET LEU GLY ILE VAL PRO ILE LEU GLY MET ALA ALA ALA SEQRES 24 A 461 THR THR SER VAL THR GLY ALA ALA TYR GLY GLU ARG ASN SEQRES 25 A 461 VAL GLU LYS LEU GLU THR ALA TYR LEU TYR ALA ILE LYS SEQRES 26 A 461 ILE ALA PHE MET ILE GLU LEU ALA VAL VAL ALA PHE ILE SEQRES 27 A 461 MET LEU PHE ALA PRO GLN VAL ALA TYR LEU PHE THR TYR SEQRES 28 A 461 SER GLU SER ALA GLN VAL ILE LYS GLY ASP LEU ILE SER SEQRES 29 A 461 ALA LEU ARG THR LEU PRO VAL PHE LEU VAL LEU THR PRO SEQRES 30 A 461 PHE GLY MET MET THR SER ALA MET PHE GLN GLY ILE GLY SEQRES 31 A 461 GLU GLY GLU LYS SER LEU ILE LEU THR ILE PHE ARG THR SEQRES 32 A 461 LEU VAL MET GLN VAL GLY PHE ALA TYR ILE PHE VAL HIS SEQRES 33 A 461 TYR THR THR LEU GLY LEU ARG GLY VAL TRP ILE GLY ILE SEQRES 34 A 461 VAL ILE GLY ASN MET VAL ALA ALA ILE VAL GLY PHE LEU SEQRES 35 A 461 TRP GLY ARG MET ARG ILE SER ALA LEU LYS LYS THR SER SEQRES 36 A 461 ALA THR GLY GLY LYS ARG SEQRES 1 B 12 ACE DPN VAL TYR SER ALA VAL CYS ALA ALA ALA ALA HET ACE B 0 3 HET DPN B 1 11 HET OLC A 501 18 HET OLC A 502 13 HET OLC A 503 18 HETNAM ACE ACETYL GROUP HETNAM DPN D-PHENYLALANINE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 ACE C2 H4 O FORMUL 2 DPN C9 H11 N O2 FORMUL 3 OLC 3(C21 H40 O4) FORMUL 6 HOH *8(H2 O) HELIX 1 1 THR A 6 ARG A 13 1 8 HELIX 2 2 ASP A 15 LEU A 48 1 34 HELIX 3 3 GLY A 49 PHE A 59 1 11 HELIX 4 4 PHE A 59 ALA A 87 1 29 HELIX 5 5 ASP A 89 LEU A 116 1 28 HELIX 6 6 ALA A 118 GLY A 127 1 10 HELIX 7 7 VAL A 133 ALA A 145 1 13 HELIX 8 8 GLY A 146 GLY A 162 1 17 HELIX 9 9 ASP A 165 TYR A 189 1 25 HELIX 10 10 GLY A 194 PHE A 218 1 25 HELIX 11 11 SER A 235 MET A 256 1 22 HELIX 12 12 ALA A 259 THR A 269 1 11 HELIX 13 13 GLU A 273 MET A 287 1 15 HELIX 14 14 GLY A 289 GLU A 310 1 22 HELIX 15 15 ASN A 312 PHE A 341 1 30 HELIX 16 16 PHE A 341 THR A 350 1 10 HELIX 17 17 LYS A 359 LEU A 366 1 8 HELIX 18 18 THR A 368 VAL A 374 5 7 HELIX 19 19 LEU A 375 GLY A 390 1 16 HELIX 20 20 GLU A 391 LEU A 404 1 14 HELIX 21 21 MET A 406 HIS A 416 1 11 HELIX 22 22 LEU A 422 LYS A 453 1 32 LINK C ACE B 0 N DPN B 1 1555 1555 1.33 LINK CH3 ACE B 0 SG CYS B 7 1555 1555 1.80 LINK C DPN B 1 N VAL B 2 1555 1555 1.33 CISPEP 1 TYR B 3 SER B 4 0 0.30 CISPEP 2 VAL B 6 CYS B 7 0 -5.67 CISPEP 3 CYS B 7 ALA B 8 0 8.93 CISPEP 4 ALA B 8 ALA B 9 0 0.56 SITE 1 AC1 2 ARG A 141 TYR A 200 SITE 1 AC2 6 HIS A 99 ILE A 102 ILE A 106 THR A 190 SITE 2 AC2 6 PHE A 232 LEU A 239 SITE 1 AC3 4 LEU A 101 SER A 210 THR A 228 LEU A 229 SITE 1 AC4 14 GLN A 34 TYR A 37 ASN A 38 PHE A 60 SITE 2 AC4 14 MET A 64 ILE A 67 ALA A 71 ASN A 153 SITE 3 AC4 14 ASN A 154 ALA A 172 MET A 173 ASN A 180 SITE 4 AC4 14 THR A 209 GLN A 253 CRYST1 158.521 59.599 68.335 90.00 90.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006308 0.000000 0.000109 0.00000 SCALE2 0.000000 0.016779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014636 0.00000