HEADER TRANSCRIPTION REGULATOR 30-JUL-12 3VW1 TITLE CRYSTAL STRUCUTURE OF THE CRYSTAL VIOLET-BOUND FORM OF RAMR TITLE 2 (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TITLE 3 TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RAMR, TETR-LIKE TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 588858; SOURCE 4 STRAIN: 14028S; SOURCE 5 GENE: STM0580, STM14_0676; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DUET KEYWDS TETR TRANSCRIPTIONAL REGULATOR FAMILY, HTH-MOTIF, TRANSCRIPTIONAL KEYWDS 2 REGULATOR, DNA BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.SAKURAI,S.YAMASAKI,R.NAKASHIMA,E.NIKAIDO,A.YAMAGUCHI,K.NISHINO REVDAT 4 20-MAR-24 3VW1 1 REMARK SEQADV REVDAT 3 22-NOV-17 3VW1 1 REMARK REVDAT 2 24-JUL-13 3VW1 1 JRNL REVDAT 1 03-JUL-13 3VW1 0 JRNL AUTH S.YAMASAKI,E.NIKAIDO,R.NAKASHIMA,K.SAKURAI,D.FUJIWARA, JRNL AUTH 2 I.FUJII,K.NISHINO JRNL TITL THE CRYSTAL STRUCTURE OF MULTIDRUG-RESISTANCE REGULATOR RAMR JRNL TITL 2 WITH MULTIPLE DRUGS JRNL REF NAT COMMUN V. 4 2078 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23800819 JRNL DOI 10.1038/NCOMMS3078 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 40075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6023 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8128 ; 1.522 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 731 ; 4.219 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;38.820 ;22.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;16.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;19.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 893 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4560 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3655 ; 1.513 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5816 ; 2.681 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 3.657 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2312 ; 5.493 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3VW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 20MM NAPI, 75MM NACL, 0.2M REMARK 280 AMMONIUM SULFATE, 2MM DTT, 20% PEG 6000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 192 REMARK 465 GLN A 193 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 192 REMARK 465 GLN B 193 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 3 REMARK 465 PRO C 4 REMARK 465 LYS C 5 REMARK 465 SER C 6 REMARK 465 GLU C 7 REMARK 465 GLU C 192 REMARK 465 GLN C 193 REMARK 465 MET D 0 REMARK 465 VAL D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 GLU D 7 REMARK 465 GLU D 191 REMARK 465 GLU D 192 REMARK 465 GLN D 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 125 42.54 -97.12 REMARK 500 PHE A 127 59.76 -164.09 REMARK 500 SER B 24 25.26 -148.12 REMARK 500 ILE B 26 2.47 -55.41 REMARK 500 SER B 29 72.48 -64.46 REMARK 500 GLU B 41 -85.21 -62.03 REMARK 500 THR B 43 -5.37 -30.57 REMARK 500 PHE B 45 1.73 -59.34 REMARK 500 ALA B 49 -97.95 -80.99 REMARK 500 ILE B 71 -26.84 -35.35 REMARK 500 ASP B 75 -160.45 -121.43 REMARK 500 ARG B 76 -44.65 -140.36 REMARK 500 HIS B 135 -6.20 -57.65 REMARK 500 GLN C 11 -29.68 -39.13 REMARK 500 GLU C 113 -9.49 69.57 REMARK 500 HIS C 135 42.91 -57.33 REMARK 500 ARG C 136 -28.34 -162.67 REMARK 500 GLU D 73 2.15 -157.47 REMARK 500 SER D 77 -64.29 -141.93 REMARK 500 THR D 79 -3.89 -140.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVI D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVX RELATED DB: PDB REMARK 900 RELATED ID: 3VVY RELATED DB: PDB REMARK 900 RELATED ID: 3VVZ RELATED DB: PDB REMARK 900 RELATED ID: 3VW0 RELATED DB: PDB REMARK 900 RELATED ID: 3VW2 RELATED DB: PDB DBREF 3VW1 A 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VW1 B 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VW1 C 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VW1 D 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 SEQADV 3VW1 MET A 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 VAL A 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 MET B 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 VAL B 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 MET C 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 VAL C 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 MET D 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VW1 VAL D 1 UNP D0ZP76 EXPRESSION TAG SEQRES 1 A 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 A 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 A 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 A 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 A 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 A 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 A 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 A 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 A 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 A 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 A 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 A 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 A 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 A 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 A 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 B 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 B 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 B 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 B 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 B 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 B 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 B 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 B 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 B 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 B 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 B 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 B 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 B 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 B 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 B 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 C 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 C 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 C 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 C 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 C 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 C 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 C 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 C 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 C 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 C 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 C 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 C 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 C 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 C 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 C 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 D 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 D 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 D 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 D 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 D 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 D 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 D 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 D 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 D 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 D 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 D 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 D 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 D 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 D 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 D 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN HET SO4 A 201 5 HET CL A 202 1 HET CVI B 301 28 HET SO4 B 302 5 HET SO4 C 201 5 HET CVI D 301 28 HET SO4 D 302 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM CVI CRYSTAL VIOLET FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 7 CVI 2(C25 H30 N3 1+) FORMUL 12 HOH *116(H2 O) HELIX 1 1 ASP A 8 GLY A 25 1 18 HELIX 2 2 ILE A 26 ALA A 28 5 3 HELIX 3 3 SER A 29 ALA A 37 1 9 HELIX 4 4 ALA A 40 PHE A 48 1 9 HELIX 5 5 THR A 50 GLU A 73 1 24 HELIX 6 6 ASP A 80 HIS A 99 1 20 HELIX 7 7 HIS A 99 VAL A 111 1 13 HELIX 8 8 THR A 116 ASP A 125 1 10 HELIX 9 9 PHE A 127 ARG A 136 1 10 HELIX 10 10 LEU A 139 SER A 144 5 6 HELIX 11 11 TYR A 147 ASP A 169 1 23 HELIX 12 12 ARG A 172 THR A 189 1 18 HELIX 13 13 LYS B 9 GLY B 25 1 17 HELIX 14 14 SER B 29 ALA B 37 1 9 HELIX 15 15 THR B 50 ILE B 71 1 22 HELIX 16 16 ASP B 80 HIS B 99 1 20 HELIX 17 17 HIS B 99 VAL B 111 1 13 HELIX 18 18 THR B 116 PHE B 127 1 12 HELIX 19 19 PHE B 127 VAL B 138 1 12 HELIX 20 20 LEU B 139 SER B 144 5 6 HELIX 21 21 TYR B 147 ASP B 169 1 23 HELIX 22 22 ARG B 172 THR B 189 1 18 HELIX 23 23 LYS C 9 GLY C 25 1 17 HELIX 24 24 SER C 29 GLY C 38 1 10 HELIX 25 25 ALA C 40 PHE C 48 1 9 HELIX 26 26 THR C 50 LEU C 74 1 25 HELIX 27 27 ASP C 80 HIS C 99 1 20 HELIX 28 28 HIS C 99 VAL C 111 1 13 HELIX 29 29 THR C 116 ASP C 125 1 10 HELIX 30 30 PHE C 127 VAL C 138 1 12 HELIX 31 31 LEU C 139 SER C 144 5 6 HELIX 32 32 TYR C 147 ASP C 169 1 23 HELIX 33 33 ARG C 172 THR C 189 1 18 HELIX 34 34 LYS D 9 GLY D 25 1 17 HELIX 35 35 SER D 29 ALA D 37 1 9 HELIX 36 36 ALA D 40 PHE D 48 1 9 HELIX 37 37 THR D 50 ILE D 71 1 22 HELIX 38 38 MET D 72 LEU D 74 5 3 HELIX 39 39 ASP D 80 HIS D 99 1 20 HELIX 40 40 HIS D 99 SER D 112 1 14 HELIX 41 41 THR D 116 MET D 126 1 11 HELIX 42 42 PHE D 127 VAL D 138 1 12 HELIX 43 43 LEU D 139 SER D 144 5 6 HELIX 44 44 TYR D 147 ASP D 169 1 23 HELIX 45 45 ARG D 172 THR D 189 1 18 SITE 1 AC1 5 GLN A 19 HIS A 99 PRO A 100 ALA A 101 SITE 2 AC1 5 ARG A 102 SITE 1 AC2 2 ARG A 35 LYS D 51 SITE 1 AC3 11 TYR B 59 LEU B 66 CYS B 67 MET B 70 SITE 2 AC3 11 ILE B 88 SER B 91 TYR B 92 ILE B 106 SITE 3 AC3 11 LEU B 130 PHE B 155 HOH B 410 SITE 1 AC4 5 GLN B 19 HIS B 99 PRO B 100 ALA B 101 SITE 2 AC4 5 ARG B 102 SITE 1 AC5 5 GLN C 19 HIS C 99 PRO C 100 ALA C 101 SITE 2 AC5 5 ARG C 102 SITE 1 AC6 11 TYR D 59 CYS D 67 MET D 70 ILE D 88 SITE 2 AC6 11 SER D 91 ILE D 106 PHE D 127 LEU D 130 SITE 3 AC6 11 CYS D 134 VAL D 138 PHE D 155 SITE 1 AC7 7 GLN D 19 ASN D 98 HIS D 99 PRO D 100 SITE 2 AC7 7 ALA D 101 ARG D 102 HOH D 414 CRYST1 43.594 54.741 92.711 104.45 97.25 89.93 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022939 -0.000027 0.003007 0.00000 SCALE2 0.000000 0.018268 0.004745 0.00000 SCALE3 0.000000 0.000000 0.011234 0.00000