HEADER    IMMUNE SYSTEM/DNA                       30-JUL-12   3VW3              
TITLE     ANTIBODY 64M-5 FAB IN COMPLEX WITH A DOUBLE-STRANDED DNA (6-4)        
TITLE    2 PHOTOPRODUCT                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-5 FAB (LIGHT CHAIN);  
COMPND   3 CHAIN: L;                                                            
COMPND   4 MOL_ID: 2;                                                           
COMPND   5 MOLECULE: ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-5 FAB (HEAVY CHAIN);  
COMPND   6 CHAIN: H;                                                            
COMPND   7 MOL_ID: 3;                                                           
COMPND   8 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)            
COMPND   9 P*AP*TP*GP*GP*AP*CP*GP*G)-3');                                       
COMPND  10 CHAIN: A;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 4;                                                           
COMPND  13 MOLECULE: DNA (5'-                                                   
COMPND  14 D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3');        
COMPND  15 CHAIN: B;                                                            
COMPND  16 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_TAXID: 10090;                                               
SOURCE   4 STRAIN: BALB/C;                                                      
SOURCE   5 OTHER_DETAILS: HYBRIDOMA;                                            
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   8 ORGANISM_TAXID: 10090;                                               
SOURCE   9 STRAIN: BALB/C;                                                      
SOURCE  10 OTHER_DETAILS: HYBRIDOMA;                                            
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: DNA WITH (6-4) PHOTOPRODUCT;                          
SOURCE  14 MOL_ID: 4;                                                           
SOURCE  15 SYNTHETIC: YES;                                                      
SOURCE  16 OTHER_DETAILS: SYNTHETIC DNA                                         
KEYWDS    PROTEIN-DNA COMPLEX, DNA (6-4) PHOTOPRODUCT, IMMUNOGLOBULIN, IMMUNE   
KEYWDS   2 SYSTEM-DNA COMPLEX                                                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.YOKOYAMA,R.MIZUTANI,Y.SATOW                                         
REVDAT   4   06-NOV-24 3VW3    1       REMARK                                   
REVDAT   3   08-NOV-23 3VW3    1       REMARK LINK                              
REVDAT   2   30-APR-14 3VW3    1       JRNL                                     
REVDAT   1   27-MAR-13 3VW3    0                                                
JRNL        AUTH   H.YOKOYAMA,R.MIZUTANI,Y.SATOW                                
JRNL        TITL   STRUCTURE OF A DOUBLE-STRANDED DNA (6-4) PHOTOPRODUCT IN     
JRNL        TITL 2 COMPLEX WITH THE 64M-5 ANTIBODY FAB                          
JRNL        REF    ACTA CRYSTALLOGR.,SECT.D      V.  69   504 2013              
JRNL        REFN                   ISSN 0907-4449                               
JRNL        PMID   23519658                                                     
JRNL        DOI    10.1107/S0907444912050007                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   H.YOKOYAMA,R.MIZUTANI,Y.SATOW,K.SATO,Y.KOMATSU,E.OHTSUKA,    
REMARK   1  AUTH 2 O.NIKAIDO                                                    
REMARK   1  TITL   STRUCTURE OF THE DNA (6-4) PHOTOPRODUCT DTT(6-4)TT IN        
REMARK   1  TITL 2 COMPLEX WITH THE 64M-2 ANTIBODY FAB FRAGMENT IMPLIES         
REMARK   1  TITL 3 INCREASED ANTIBODY-BINDING AFFINITY BY THE FLANKING          
REMARK   1  TITL 4 NUCLEOTIDES                                                  
REMARK   1  REF    ACTA CRYSTALLOGR.,SECT.D      V.  68   232 2012              
REMARK   1  REFN                   ISSN 0907-4449                               
REMARK   1  PMID   22349224                                                     
REMARK   1  DOI    10.1107/S0907444912000327                                    
REMARK   1 REFERENCE 2                                                          
REMARK   1  AUTH   H.YOKOYAMA,R.MIZUTANI,Y.SATOW,Y.KOMATSU,E.OHTSUKA,O.NIKAIDO  
REMARK   1  TITL   CRYSTAL STRUCTURE OF THE 64M-2 ANTIBODY FAB FRAGMENT IN      
REMARK   1  TITL 2 COMPLEX WITH A DNA DT(6-4)T PHOTOPRODUCT FORMED BY           
REMARK   1  TITL 3 ULTRAVIOLET RADIATION                                        
REMARK   1  REF    J.MOL.BIOL.                   V. 299   711 2000              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  PMID   10835279                                                     
REMARK   1  DOI    10.1006/JMBI.2000.3772                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 28.26                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 3.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 573129.690                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 96.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 20294                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.247                           
REMARK   3   FREE R VALUE                     : 0.290                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.800                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1993                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.006                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.50                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.66                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 95.10                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2916                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3240                       
REMARK   3   BIN FREE R VALUE                    : 0.4210                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.90                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 322                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.023                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3307                                    
REMARK   3   NUCLEIC ACID ATOMS       : 732                                     
REMARK   3   HETEROGEN ATOMS          : 7                                       
REMARK   3   SOLVENT ATOMS            : 144                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 49.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 54.80                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -7.77000                                             
REMARK   3    B22 (A**2) : -7.77000                                             
REMARK   3    B33 (A**2) : 15.53000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.35                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.26                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.44                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.44                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.009                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.400                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.60                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.120                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 4.860 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 7.010 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 7.020 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 9.400 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.30                                                 
REMARK   3   BSOL        : 48.13                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_REP.PARAM                              
REMARK   3  PARAMETER FILE  3  : T64B.PARAM                                     
REMARK   3  PARAMETER FILE  4  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  5  : NCO_XPLOR_PAR.TXT                              
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : T64B.TOP                                       
REMARK   3  TOPOLOGY FILE  4   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  5   : NCO_XPLOR_TOP.TXT                              
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED                   
REMARK   4                                                                      
REMARK   4 3VW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-12.                  
REMARK 100 THE DEPOSITION ID IS D_1000095572.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-MAR-02                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL41XU                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.8000                             
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MAR CCD 165 MM                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 20541                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.1                               
REMARK 200  DATA REDUNDANCY                : 10.50                              
REMARK 200  R MERGE                    (I) : 0.05400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 60.7000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.59                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 97.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.24000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 16.00                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1KEG                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 49.34                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.1M MAGNESIUM ACETATE,    
REMARK 280  10MM COBALT HEXAMINE CHLORIDE, 0.1M TRIS-HCL, PH 8.0, VAPOR         
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 277K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+3/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+1/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+3/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+1/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      121.82900            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       34.21500            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       34.21500            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000      182.74350            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       34.21500            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       34.21500            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       60.91450            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       34.21500            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       34.21500            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000      182.74350            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       34.21500            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       34.21500            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       60.91450            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000      121.82900            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 25090 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A, B                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP L     1                                                      
REMARK 465     GLU L   213                                                      
REMARK 465     ASN H   135                                                      
REMARK 465     VAL H   193                                                      
REMARK 465     PRO H   194                                                      
REMARK 465     SER H   195                                                      
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     LEU L    3   CG   CD1  CD2                                       
REMARK 480     ARG L   24   CG   CD   NE   CZ   NH1  NH2                        
REMARK 480     SER L   63   OG                                                  
REMARK 480     ILE L  106   CG1  CG2  CD1                                       
REMARK 480     LEU L  125   CG   CD1  CD2                                       
REMARK 480     THR L  126   OG1  CG2                                            
REMARK 480     SER L  127   OG                                                  
REMARK 480     GLN L  156   CG   CD   OE1  NE2                                  
REMARK 480     ASN L  157   CG   OD1  ND2                                       
REMARK 480     LEU L  181   CG   CD1  CD2                                       
REMARK 480     LYS L  183   CG   CD   CE   NZ                                   
REMARK 480     THR L  197   OG1  CG2                                            
REMARK 480     ASN L  212   CG   OD1  ND2                                       
REMARK 480     SER H  113   OG                                                  
REMARK 480     VAL H  144   CG1  CG2                                            
REMARK 480     SER H  167   OG                                                  
REMARK 480     THR H  199   OG1  CG2                                            
REMARK 480     SER H  203   OG                                                  
REMARK 480     GLU H  204   CG   CD   OE1  OE2                                  
REMARK 480     THR H  205   OG1  CG2                                            
REMARK 480     THR H  207   OG1  CG2                                            
REMARK 480     ASN H  209   CG   OD1  ND2                                       
REMARK 480     SER H  215   OG                                                  
REMARK 480     SER H  216   OG                                                  
REMARK 480     THR H  217   OG1  CG2                                            
REMARK 480     ASP H  220   CG   OD1  OD2                                       
REMARK 480     LYS H  222   CG   CD   CE   NZ                                   
REMARK 480     ILE H  223   CG1  CG2  CD1                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC B  15   O4' -  C1' -  N1  ANGL. DEV. =   2.3 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER L  27E      -2.24    -58.73                                   
REMARK 500    VAL L  51      -53.08     71.45                                   
REMARK 500    ARG L  61        2.97    -66.51                                   
REMARK 500    HIS L  93     -118.97     62.81                                   
REMARK 500    PRO L 113      108.57    -57.96                                   
REMARK 500    SER L 116      112.62   -160.37                                   
REMARK 500    ASN L 138       86.80     45.18                                   
REMARK 500    ASP L 151       44.43     70.99                                   
REMARK 500    ASN L 190      -38.25   -135.95                                   
REMARK 500    PRO L 204      175.16    -57.00                                   
REMARK 500    ARG L 211       23.71    -51.99                                   
REMARK 500    THR H   9      153.14    -37.74                                   
REMARK 500    ASN H  54       13.89   -142.37                                   
REMARK 500    SER H  74      -16.88    -49.45                                   
REMARK 500    ALA H  88     -179.08    173.33                                   
REMARK 500    SER H 100      141.56    178.84                                   
REMARK 500    ALA H 100J    -172.16   -179.98                                   
REMARK 500    SER H 128       71.49     59.35                                   
REMARK 500    ALA H 129       -2.84   -146.08                                   
REMARK 500    PRO H 149     -169.22   -103.10                                   
REMARK 500    GLN H 179       76.52   -114.96                                   
REMARK 500    SER H 180       87.33     68.35                                   
REMARK 500    ASP H 183      -14.96     60.27                                   
REMARK 500    PRO H 227      174.19    -44.45                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO H 301                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1KEG   RELATED DB: PDB                                   
REMARK 900 THE RELATED ANTIBODY FAB IN COMPLEX WITH DNA (6-4) PHOTOPRODUCT      
REMARK 900 RELATED ID: 1EHL   RELATED DB: PDB                                   
REMARK 900 THE RELATED ANTIBODY FAB IN COMPLEX WITH DNA (6-4) PHOTOPRODUCT      
DBREF  3VW3 L    1   213  PDB    3VW3     3VW3             1    213             
DBREF  3VW3 H    1   228  PDB    3VW3     3VW3             1    228             
DBREF  3VW3 A    1    18  PDB    3VW3     3VW3             1     18             
DBREF  3VW3 B    1    18  PDB    3VW3     3VW3             1     18             
SEQRES   1 L  217  ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL          
SEQRES   2 L  217  SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER          
SEQRES   3 L  217  GLN ASN ILE VAL HIS SER ASN GLY TYR THR TYR LEU GLU          
SEQRES   4 L  217  TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU          
SEQRES   5 L  217  ILE TYR THR VAL SER ASN ARG PHE SER GLY VAL PRO ASP          
SEQRES   6 L  217  ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU          
SEQRES   7 L  217  LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR          
SEQRES   8 L  217  TYR CYS PHE ARG GLY SER HIS VAL PRO THR PHE GLY GLY          
SEQRES   9 L  217  GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO          
SEQRES  10 L  217  THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR          
SEQRES  11 L  217  SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE          
SEQRES  12 L  217  TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY          
SEQRES  13 L  217  SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP          
SEQRES  14 L  217  GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR          
SEQRES  15 L  217  LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER          
SEQRES  16 L  217  TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO          
SEQRES  17 L  217  ILE VAL LYS SER PHE ASN ARG ASN GLU                          
SEQRES   1 H  220  GLU VAL GLN LEU GLN GLN SER GLY THR VAL LEU ALA ARG          
SEQRES   2 H  220  PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY          
SEQRES   3 H  220  TYR THR PHE THR ASN TYR TRP MET HIS TRP ILE LYS GLN          
SEQRES   4 H  220  ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY THR ILE TYR          
SEQRES   5 H  220  PRO GLY ASN SER ASP THR THR TYR SER GLN LYS PHE LYS          
SEQRES   6 H  220  GLY LYS ALA LYS LEU THR ALA VAL THR SER THR SER THR          
SEQRES   7 H  220  ALA TYR MET GLU LEU SER SER LEU THR ASN GLU ASP SER          
SEQRES   8 H  220  ALA VAL TYR TYR CYS SER ARG ARG ASN TYR GLY SER SER          
SEQRES   9 H  220  TYR ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR          
SEQRES  10 H  220  VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO          
SEQRES  11 H  220  LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL          
SEQRES  12 H  220  THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO          
SEQRES  13 H  220  VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY          
SEQRES  14 H  220  VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR          
SEQRES  15 H  220  THR LEU SER SER SER VAL THR VAL PRO SER SER THR TRP          
SEQRES  16 H  220  PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA          
SEQRES  17 H  220  SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG              
SEQRES   1 A   18   DG  DC  DG  DA  DG  DT  DG  DA 64T 5PY  DA  DT  DG          
SEQRES   2 A   18   DG  DA  DC  DG  DG                                          
SEQRES   1 B   18   DC  DC  DC  DG  DT  DC  DC  DA  DT  DA  DA  DT  DC          
SEQRES   2 B   18   DA  DC  DT  DC  DG                                          
MODRES 3VW3 64T A    9   DT  5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE               
MODRES 3VW3 5PY A   10   DT                                                     
HET    64T  A   9      21                                                       
HET    5PY  A  10      19                                                       
HET    NCO  H 301       7                                                       
HETNAM     64T 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE                             
HETNAM     5PY 1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO-                       
HETNAM   2 5PY  PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE                     
HETNAM     NCO COBALT HEXAMMINE(III)                                            
FORMUL   3  64T    C10 H17 N2 O9 P                                              
FORMUL   3  5PY    C10 H15 N2 O7 P                                              
FORMUL   5  NCO    CO H18 N6 3+                                                 
FORMUL   6  HOH   *144(H2 O)                                                    
HELIX    1   1 GLU L   79  LEU L   83  5                                   5    
HELIX    2   2 SER L  121  SER L  127  1                                   7    
HELIX    3   3 LYS L  183  HIS L  189  1                                   7    
HELIX    4   4 THR H   28  TYR H   32  5                                   5    
HELIX    5   5 GLN H   61  LYS H   64  5                                   4    
HELIX    6   6 THR H   73  THR H   75  5                                   3    
HELIX    7   7 THR H   83  SER H   87  5                                   5    
SHEET    1   A 4 MET L   4  THR L   7  0                                        
SHEET    2   A 4 ALA L  19  SER L  25 -1  O  SER L  22   N  THR L   7           
SHEET    3   A 4 ASP L  70  ILE L  75 -1  O  PHE L  71   N  CYS L  23           
SHEET    4   A 4 PHE L  62  SER L  67 -1  N  SER L  65   O  THR L  72           
SHEET    1   B 6 SER L  10  VAL L  13  0                                        
SHEET    2   B 6 THR L 102  ILE L 106  1  O  LYS L 103   N  LEU L  11           
SHEET    3   B 6 GLY L  84  ARG L  90 -1  N  GLY L  84   O  LEU L 104           
SHEET    4   B 6 LEU L  33  GLN L  38 -1  N  GLU L  34   O  PHE L  89           
SHEET    5   B 6 LYS L  45  TYR L  49 -1  O  LYS L  45   N  LEU L  37           
SHEET    6   B 6 ASN L  53  ARG L  54 -1  O  ASN L  53   N  TYR L  49           
SHEET    1   C 4 SER L  10  VAL L  13  0                                        
SHEET    2   C 4 THR L 102  ILE L 106  1  O  LYS L 103   N  LEU L  11           
SHEET    3   C 4 GLY L  84  ARG L  90 -1  N  GLY L  84   O  LEU L 104           
SHEET    4   C 4 THR L  97  PHE L  98 -1  O  THR L  97   N  ARG L  90           
SHEET    1   D 4 THR L 114  PHE L 118  0                                        
SHEET    2   D 4 GLY L 129  PHE L 139 -1  O  VAL L 133   N  PHE L 118           
SHEET    3   D 4 TYR L 173  THR L 182 -1  O  LEU L 179   N  VAL L 132           
SHEET    4   D 4 VAL L 159  THR L 164 -1  N  LEU L 160   O  THR L 178           
SHEET    1   E 4 SER L 153  ARG L 155  0                                        
SHEET    2   E 4 ILE L 144  ILE L 150 -1  N  TRP L 148   O  ARG L 155           
SHEET    3   E 4 SER L 191  HIS L 198 -1  O  GLU L 195   N  LYS L 147           
SHEET    4   E 4 ILE L 205  ASN L 210 -1  O  LYS L 207   N  CYS L 194           
SHEET    1   F 4 GLN H   3  GLN H   6  0                                        
SHEET    2   F 4 VAL H  18  SER H  25 -1  O  LYS H  23   N  GLN H   5           
SHEET    3   F 4 THR H  77  LEU H  82 -1  O  ALA H  78   N  CYS H  22           
SHEET    4   F 4 ALA H  67  VAL H  72 -1  N  THR H  70   O  TYR H  79           
SHEET    1   G 6 VAL H  10  ALA H  12  0                                        
SHEET    2   G 6 THR H 107  VAL H 111  1  O  THR H 110   N  ALA H  12           
SHEET    3   G 6 ALA H  88  ASN H  96 -1  N  ALA H  88   O  VAL H 109           
SHEET    4   G 6 MET H  34  GLN H  39 -1  N  ILE H  37   O  TYR H  91           
SHEET    5   G 6 GLU H  46  ILE H  51 -1  O  ILE H  51   N  MET H  34           
SHEET    6   G 6 THR H  57  TYR H  59 -1  O  THR H  58   N  THR H  50           
SHEET    1   H 4 VAL H  10  ALA H  12  0                                        
SHEET    2   H 4 THR H 107  VAL H 111  1  O  THR H 110   N  ALA H  12           
SHEET    3   H 4 ALA H  88  ASN H  96 -1  N  ALA H  88   O  VAL H 109           
SHEET    4   H 4 ALA H 100J TRP H 103 -1  O  ALA H 100J  N  ASN H  96           
SHEET    1   I 4 TYR H 122  LEU H 124  0                                        
SHEET    2   I 4 LEU H 140  TYR H 147 -1  O  GLY H 141   N  LEU H 124           
SHEET    3   I 4 TYR H 185  VAL H 191 -1  O  LEU H 187   N  VAL H 144           
SHEET    4   I 4 VAL H 171  THR H 173 -1  N  HIS H 172   O  SER H 190           
SHEET    1   J 4 TYR H 122  LEU H 124  0                                        
SHEET    2   J 4 LEU H 140  TYR H 147 -1  O  GLY H 141   N  LEU H 124           
SHEET    3   J 4 TYR H 185  VAL H 191 -1  O  LEU H 187   N  VAL H 144           
SHEET    4   J 4 VAL H 177  LEU H 178 -1  N  VAL H 177   O  THR H 186           
SHEET    1   K 3 THR H 153  TRP H 157  0                                        
SHEET    2   K 3 THR H 207  HIS H 212 -1  O  ALA H 211   N  THR H 153           
SHEET    3   K 3 THR H 217  LYS H 222 -1  O  LYS H 221   N  CYS H 208           
SSBOND   1 CYS L   23    CYS L   88                          1555   1555  2.04  
SSBOND   2 CYS L  134    CYS L  194                          1555   1555  2.03  
SSBOND   3 CYS H   22    CYS H   92                          1555   1555  2.04  
SSBOND   4 CYS H  142    CYS H  208                          1555   1555  2.03  
LINK         O3'  DA A   8                 P   64T A   9     1555   1555  1.60  
LINK         O3' 64T A   9                 P   5PY A  10     1555   1555  1.60  
LINK         C6  64T A   9                 C4  5PY A  10     1555   1555  1.53  
LINK         O3' 5PY A  10                 P    DA A  11     1555   1555  1.61  
CISPEP   1 THR L    7    PRO L    8          0        -0.40                     
CISPEP   2 TYR L  140    PRO L  141          0         0.09                     
CISPEP   3 PHE H  148    PRO H  149          0        -0.35                     
CISPEP   4 GLU H  150    PRO H  151          0        -0.31                     
CISPEP   5 TRP H  200    PRO H  202          0        -0.67                     
SITE     1 AC1  4  DA A  11  ASP H  56  THR H  57  THR H  58                    
CRYST1   68.430   68.430  243.658  90.00  90.00  90.00 P 43 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014613  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.014613  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.004104        0.00000