data_3VW4 # _entry.id 3VW4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VW4 pdb_00003vw4 10.2210/pdb3vw4/pdb NDB NA2008 ? ? RCSB RCSB095573 ? ? WWPDB D_1000095573 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2015-01-28 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VW4 _pdbx_database_status.recvd_initial_deposition_date 2012-07-31 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Itou, H.' 1 'Yagura, M.' 2 'Itoh, T.' 3 'Shirakihara, Y.' 4 # _citation.id primary _citation.title ;Structural Basis for Replication Origin Unwinding by An Initiator-Primase of Plasmid ColE2-P9: Duplex DNA Unwinding by A Single Protein ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 290 _citation.page_first 3601 _citation.page_last 3611 _citation.year 2015 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25538245 _citation.pdbx_database_id_DOI 10.1074/jbc.M114.595645 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Itou, H.' 1 ? primary 'Yagura, M.' 2 ? primary 'Shirakihara, Y.' 3 ? primary 'Itoh, T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rep 14726.999 2 ? ? 'DNA-bindig domain' ? 2 polymer syn ;DNA (5'-D(P*AP*AP*TP*GP*AP*GP*AP*CP*CP*AP*GP*AP*TP*AP*AP*GP*CP*CP*TP*TP*AP*TP*C)-3') ; 7057.600 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*AP*TP*AP*AP*GP*GP*CP*TP*TP*AP*TP*CP*TP*GP*GP*TP*CP*TP*CP*AP*TP*T)-3') ; 7061.568 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 5 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'replication initiator ColE2-Rep' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGHHHHHHRNYHLFEKVRKWAYRAIRQGWPVFSQWLDAVIQRVEMYNASLPVPLSPAECRAIGKSIAKYTHRKFSPEGFS AVQAARGRKGGTKSKRAAVPTSARSLKPWEALGISRATYYRKLKCDPD ; ;MGHHHHHHRNYHLFEKVRKWAYRAIRQGWPVFSQWLDAVIQRVEMYNASLPVPLSPAECRAIGKSIAKYTHRKFSPEGFS AVQAARGRKGGTKSKRAAVPTSARSLKPWEALGISRATYYRKLKCDPD ; A,B ? 2 polydeoxyribonucleotide no no ;(DA)(DA)(DT)(DG)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DG)(DC)(DC)(DT)(DT) (DA)(DT)(DC) ; AATGAGACCAGATAAGCCTTATC C,E ? 3 polydeoxyribonucleotide no no ;(DG)(DA)(DT)(DA)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DT)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DC) (DA)(DT)(DT) ; GATAAGGCTTATCTGGTCTCATT D,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 ARG n 1 10 ASN n 1 11 TYR n 1 12 HIS n 1 13 LEU n 1 14 PHE n 1 15 GLU n 1 16 LYS n 1 17 VAL n 1 18 ARG n 1 19 LYS n 1 20 TRP n 1 21 ALA n 1 22 TYR n 1 23 ARG n 1 24 ALA n 1 25 ILE n 1 26 ARG n 1 27 GLN n 1 28 GLY n 1 29 TRP n 1 30 PRO n 1 31 VAL n 1 32 PHE n 1 33 SER n 1 34 GLN n 1 35 TRP n 1 36 LEU n 1 37 ASP n 1 38 ALA n 1 39 VAL n 1 40 ILE n 1 41 GLN n 1 42 ARG n 1 43 VAL n 1 44 GLU n 1 45 MET n 1 46 TYR n 1 47 ASN n 1 48 ALA n 1 49 SER n 1 50 LEU n 1 51 PRO n 1 52 VAL n 1 53 PRO n 1 54 LEU n 1 55 SER n 1 56 PRO n 1 57 ALA n 1 58 GLU n 1 59 CYS n 1 60 ARG n 1 61 ALA n 1 62 ILE n 1 63 GLY n 1 64 LYS n 1 65 SER n 1 66 ILE n 1 67 ALA n 1 68 LYS n 1 69 TYR n 1 70 THR n 1 71 HIS n 1 72 ARG n 1 73 LYS n 1 74 PHE n 1 75 SER n 1 76 PRO n 1 77 GLU n 1 78 GLY n 1 79 PHE n 1 80 SER n 1 81 ALA n 1 82 VAL n 1 83 GLN n 1 84 ALA n 1 85 ALA n 1 86 ARG n 1 87 GLY n 1 88 ARG n 1 89 LYS n 1 90 GLY n 1 91 GLY n 1 92 THR n 1 93 LYS n 1 94 SER n 1 95 LYS n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 VAL n 1 100 PRO n 1 101 THR n 1 102 SER n 1 103 ALA n 1 104 ARG n 1 105 SER n 1 106 LEU n 1 107 LYS n 1 108 PRO n 1 109 TRP n 1 110 GLU n 1 111 ALA n 1 112 LEU n 1 113 GLY n 1 114 ILE n 1 115 SER n 1 116 ARG n 1 117 ALA n 1 118 THR n 1 119 TYR n 1 120 TYR n 1 121 ARG n 1 122 LYS n 1 123 LEU n 1 124 LYS n 1 125 CYS n 1 126 ASP n 1 127 PRO n 1 128 ASP n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DA n 2 13 DT n 2 14 DA n 2 15 DA n 2 16 DG n 2 17 DC n 2 18 DC n 2 19 DT n 2 20 DT n 2 21 DA n 2 22 DT n 2 23 DC n 3 1 DG n 3 2 DA n 3 3 DT n 3 4 DA n 3 5 DA n 3 6 DG n 3 7 DG n 3 8 DC n 3 9 DT n 3 10 DT n 3 11 DA n 3 12 DT n 3 13 DC n 3 14 DT n 3 15 DG n 3 16 DG n 3 17 DT n 3 18 DC n 3 19 DT n 3 20 DC n 3 21 DA n 3 22 DT n 3 23 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rep _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic oligo DNA' 3 1 sample ? ? ? ? ? 'synthetic oligo DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 167 ? ? ? A . n A 1 2 GLY 2 168 ? ? ? A . n A 1 3 HIS 3 169 ? ? ? A . n A 1 4 HIS 4 170 170 HIS HIS A . n A 1 5 HIS 5 171 171 HIS HIS A . n A 1 6 HIS 6 172 172 HIS HIS A . n A 1 7 HIS 7 173 173 HIS HIS A . n A 1 8 HIS 8 174 174 HIS HIS A . n A 1 9 ARG 9 175 175 ARG ARG A . n A 1 10 ASN 10 176 176 ASN ASN A . n A 1 11 TYR 11 177 177 TYR TYR A . n A 1 12 HIS 12 178 178 HIS HIS A . n A 1 13 LEU 13 179 179 LEU LEU A . n A 1 14 PHE 14 180 180 PHE PHE A . n A 1 15 GLU 15 181 181 GLU GLU A . n A 1 16 LYS 16 182 182 LYS LYS A . n A 1 17 VAL 17 183 183 VAL VAL A . n A 1 18 ARG 18 184 184 ARG ARG A . n A 1 19 LYS 19 185 185 LYS LYS A . n A 1 20 TRP 20 186 186 TRP TRP A . n A 1 21 ALA 21 187 187 ALA ALA A . n A 1 22 TYR 22 188 188 TYR TYR A . n A 1 23 ARG 23 189 189 ARG ARG A . n A 1 24 ALA 24 190 190 ALA ALA A . n A 1 25 ILE 25 191 191 ILE ILE A . n A 1 26 ARG 26 192 192 ARG ARG A . n A 1 27 GLN 27 193 193 GLN GLN A . n A 1 28 GLY 28 194 194 GLY GLY A . n A 1 29 TRP 29 195 195 TRP TRP A . n A 1 30 PRO 30 196 196 PRO PRO A . n A 1 31 VAL 31 197 197 VAL VAL A . n A 1 32 PHE 32 198 198 PHE PHE A . n A 1 33 SER 33 199 199 SER SER A . n A 1 34 GLN 34 200 200 GLN GLN A . n A 1 35 TRP 35 201 201 TRP TRP A . n A 1 36 LEU 36 202 202 LEU LEU A . n A 1 37 ASP 37 203 203 ASP ASP A . n A 1 38 ALA 38 204 204 ALA ALA A . n A 1 39 VAL 39 205 205 VAL VAL A . n A 1 40 ILE 40 206 206 ILE ILE A . n A 1 41 GLN 41 207 207 GLN GLN A . n A 1 42 ARG 42 208 208 ARG ARG A . n A 1 43 VAL 43 209 209 VAL VAL A . n A 1 44 GLU 44 210 210 GLU GLU A . n A 1 45 MET 45 211 211 MET MET A . n A 1 46 TYR 46 212 212 TYR TYR A . n A 1 47 ASN 47 213 213 ASN ASN A . n A 1 48 ALA 48 214 214 ALA ALA A . n A 1 49 SER 49 215 215 SER SER A . n A 1 50 LEU 50 216 216 LEU LEU A . n A 1 51 PRO 51 217 217 PRO PRO A . n A 1 52 VAL 52 218 218 VAL VAL A . n A 1 53 PRO 53 219 219 PRO PRO A . n A 1 54 LEU 54 220 220 LEU LEU A . n A 1 55 SER 55 221 221 SER SER A . n A 1 56 PRO 56 222 222 PRO PRO A . n A 1 57 ALA 57 223 223 ALA ALA A . n A 1 58 GLU 58 224 224 GLU GLU A . n A 1 59 CYS 59 225 225 CYS CYS A . n A 1 60 ARG 60 226 226 ARG ARG A . n A 1 61 ALA 61 227 227 ALA ALA A . n A 1 62 ILE 62 228 228 ILE ILE A . n A 1 63 GLY 63 229 229 GLY GLY A . n A 1 64 LYS 64 230 230 LYS LYS A . n A 1 65 SER 65 231 231 SER SER A . n A 1 66 ILE 66 232 232 ILE ILE A . n A 1 67 ALA 67 233 233 ALA ALA A . n A 1 68 LYS 68 234 234 LYS LYS A . n A 1 69 TYR 69 235 235 TYR TYR A . n A 1 70 THR 70 236 236 THR THR A . n A 1 71 HIS 71 237 237 HIS HIS A . n A 1 72 ARG 72 238 238 ARG ARG A . n A 1 73 LYS 73 239 239 LYS LYS A . n A 1 74 PHE 74 240 240 PHE PHE A . n A 1 75 SER 75 241 241 SER SER A . n A 1 76 PRO 76 242 242 PRO PRO A . n A 1 77 GLU 77 243 243 GLU GLU A . n A 1 78 GLY 78 244 244 GLY GLY A . n A 1 79 PHE 79 245 245 PHE PHE A . n A 1 80 SER 80 246 246 SER SER A . n A 1 81 ALA 81 247 247 ALA ALA A . n A 1 82 VAL 82 248 248 VAL VAL A . n A 1 83 GLN 83 249 249 GLN GLN A . n A 1 84 ALA 84 250 250 ALA ALA A . n A 1 85 ALA 85 251 251 ALA ALA A . n A 1 86 ARG 86 252 252 ARG ARG A . n A 1 87 GLY 87 253 253 GLY GLY A . n A 1 88 ARG 88 254 254 ARG ARG A . n A 1 89 LYS 89 255 255 LYS LYS A . n A 1 90 GLY 90 256 256 GLY GLY A . n A 1 91 GLY 91 257 257 GLY GLY A . n A 1 92 THR 92 258 258 THR THR A . n A 1 93 LYS 93 259 259 LYS LYS A . n A 1 94 SER 94 260 260 SER SER A . n A 1 95 LYS 95 261 261 LYS LYS A . n A 1 96 ARG 96 262 262 ARG ARG A . n A 1 97 ALA 97 263 263 ALA ALA A . n A 1 98 ALA 98 264 264 ALA ALA A . n A 1 99 VAL 99 265 265 VAL VAL A . n A 1 100 PRO 100 266 266 PRO PRO A . n A 1 101 THR 101 267 267 THR THR A . n A 1 102 SER 102 268 268 SER SER A . n A 1 103 ALA 103 269 269 ALA ALA A . n A 1 104 ARG 104 270 270 ARG ARG A . n A 1 105 SER 105 271 271 SER SER A . n A 1 106 LEU 106 272 272 LEU LEU A . n A 1 107 LYS 107 273 273 LYS LYS A . n A 1 108 PRO 108 274 274 PRO PRO A . n A 1 109 TRP 109 275 275 TRP TRP A . n A 1 110 GLU 110 276 276 GLU GLU A . n A 1 111 ALA 111 277 277 ALA ALA A . n A 1 112 LEU 112 278 278 LEU LEU A . n A 1 113 GLY 113 279 279 GLY GLY A . n A 1 114 ILE 114 280 280 ILE ILE A . n A 1 115 SER 115 281 281 SER SER A . n A 1 116 ARG 116 282 282 ARG ARG A . n A 1 117 ALA 117 283 283 ALA ALA A . n A 1 118 THR 118 284 284 THR THR A . n A 1 119 TYR 119 285 285 TYR TYR A . n A 1 120 TYR 120 286 286 TYR TYR A . n A 1 121 ARG 121 287 287 ARG ARG A . n A 1 122 LYS 122 288 288 LYS LYS A . n A 1 123 LEU 123 289 289 LEU LEU A . n A 1 124 LYS 124 290 290 LYS LYS A . n A 1 125 CYS 125 291 291 CYS CYS A . n A 1 126 ASP 126 292 ? ? ? A . n A 1 127 PRO 127 293 ? ? ? A . n A 1 128 ASP 128 294 ? ? ? A . n B 1 1 MET 1 167 ? ? ? B . n B 1 2 GLY 2 168 ? ? ? B . n B 1 3 HIS 3 169 ? ? ? B . n B 1 4 HIS 4 170 ? ? ? B . n B 1 5 HIS 5 171 171 HIS HIS B . n B 1 6 HIS 6 172 172 HIS HIS B . n B 1 7 HIS 7 173 173 HIS HIS B . n B 1 8 HIS 8 174 174 HIS HIS B . n B 1 9 ARG 9 175 175 ARG ARG B . n B 1 10 ASN 10 176 176 ASN ASN B . n B 1 11 TYR 11 177 177 TYR TYR B . n B 1 12 HIS 12 178 178 HIS HIS B . n B 1 13 LEU 13 179 179 LEU LEU B . n B 1 14 PHE 14 180 180 PHE PHE B . n B 1 15 GLU 15 181 181 GLU GLU B . n B 1 16 LYS 16 182 182 LYS LYS B . n B 1 17 VAL 17 183 183 VAL VAL B . n B 1 18 ARG 18 184 184 ARG ARG B . n B 1 19 LYS 19 185 185 LYS LYS B . n B 1 20 TRP 20 186 186 TRP TRP B . n B 1 21 ALA 21 187 187 ALA ALA B . n B 1 22 TYR 22 188 188 TYR TYR B . n B 1 23 ARG 23 189 189 ARG ARG B . n B 1 24 ALA 24 190 190 ALA ALA B . n B 1 25 ILE 25 191 191 ILE ILE B . n B 1 26 ARG 26 192 192 ARG ARG B . n B 1 27 GLN 27 193 193 GLN GLN B . n B 1 28 GLY 28 194 194 GLY GLY B . n B 1 29 TRP 29 195 195 TRP TRP B . n B 1 30 PRO 30 196 196 PRO PRO B . n B 1 31 VAL 31 197 197 VAL VAL B . n B 1 32 PHE 32 198 198 PHE PHE B . n B 1 33 SER 33 199 199 SER SER B . n B 1 34 GLN 34 200 200 GLN GLN B . n B 1 35 TRP 35 201 201 TRP TRP B . n B 1 36 LEU 36 202 202 LEU LEU B . n B 1 37 ASP 37 203 203 ASP ASP B . n B 1 38 ALA 38 204 204 ALA ALA B . n B 1 39 VAL 39 205 205 VAL VAL B . n B 1 40 ILE 40 206 206 ILE ILE B . n B 1 41 GLN 41 207 207 GLN GLN B . n B 1 42 ARG 42 208 208 ARG ARG B . n B 1 43 VAL 43 209 209 VAL VAL B . n B 1 44 GLU 44 210 210 GLU GLU B . n B 1 45 MET 45 211 211 MET MET B . n B 1 46 TYR 46 212 212 TYR TYR B . n B 1 47 ASN 47 213 213 ASN ASN B . n B 1 48 ALA 48 214 214 ALA ALA B . n B 1 49 SER 49 215 215 SER SER B . n B 1 50 LEU 50 216 216 LEU LEU B . n B 1 51 PRO 51 217 217 PRO PRO B . n B 1 52 VAL 52 218 218 VAL VAL B . n B 1 53 PRO 53 219 219 PRO PRO B . n B 1 54 LEU 54 220 220 LEU LEU B . n B 1 55 SER 55 221 221 SER SER B . n B 1 56 PRO 56 222 222 PRO PRO B . n B 1 57 ALA 57 223 223 ALA ALA B . n B 1 58 GLU 58 224 224 GLU GLU B . n B 1 59 CYS 59 225 225 CYS CYS B . n B 1 60 ARG 60 226 226 ARG ARG B . n B 1 61 ALA 61 227 227 ALA ALA B . n B 1 62 ILE 62 228 228 ILE ILE B . n B 1 63 GLY 63 229 229 GLY GLY B . n B 1 64 LYS 64 230 230 LYS LYS B . n B 1 65 SER 65 231 231 SER SER B . n B 1 66 ILE 66 232 232 ILE ILE B . n B 1 67 ALA 67 233 233 ALA ALA B . n B 1 68 LYS 68 234 234 LYS LYS B . n B 1 69 TYR 69 235 235 TYR TYR B . n B 1 70 THR 70 236 236 THR THR B . n B 1 71 HIS 71 237 237 HIS HIS B . n B 1 72 ARG 72 238 238 ARG ARG B . n B 1 73 LYS 73 239 239 LYS LYS B . n B 1 74 PHE 74 240 240 PHE PHE B . n B 1 75 SER 75 241 241 SER SER B . n B 1 76 PRO 76 242 242 PRO PRO B . n B 1 77 GLU 77 243 243 GLU GLU B . n B 1 78 GLY 78 244 244 GLY GLY B . n B 1 79 PHE 79 245 245 PHE PHE B . n B 1 80 SER 80 246 246 SER SER B . n B 1 81 ALA 81 247 247 ALA ALA B . n B 1 82 VAL 82 248 248 VAL VAL B . n B 1 83 GLN 83 249 249 GLN GLN B . n B 1 84 ALA 84 250 250 ALA ALA B . n B 1 85 ALA 85 251 251 ALA ALA B . n B 1 86 ARG 86 252 252 ARG ARG B . n B 1 87 GLY 87 253 253 GLY GLY B . n B 1 88 ARG 88 254 254 ARG ARG B . n B 1 89 LYS 89 255 255 LYS LYS B . n B 1 90 GLY 90 256 256 GLY GLY B . n B 1 91 GLY 91 257 257 GLY GLY B . n B 1 92 THR 92 258 258 THR THR B . n B 1 93 LYS 93 259 259 LYS LYS B . n B 1 94 SER 94 260 260 SER SER B . n B 1 95 LYS 95 261 261 LYS LYS B . n B 1 96 ARG 96 262 262 ARG ARG B . n B 1 97 ALA 97 263 263 ALA ALA B . n B 1 98 ALA 98 264 264 ALA ALA B . n B 1 99 VAL 99 265 265 VAL VAL B . n B 1 100 PRO 100 266 266 PRO PRO B . n B 1 101 THR 101 267 267 THR THR B . n B 1 102 SER 102 268 268 SER SER B . n B 1 103 ALA 103 269 269 ALA ALA B . n B 1 104 ARG 104 270 270 ARG ARG B . n B 1 105 SER 105 271 271 SER SER B . n B 1 106 LEU 106 272 272 LEU LEU B . n B 1 107 LYS 107 273 273 LYS LYS B . n B 1 108 PRO 108 274 274 PRO PRO B . n B 1 109 TRP 109 275 275 TRP TRP B . n B 1 110 GLU 110 276 276 GLU GLU B . n B 1 111 ALA 111 277 277 ALA ALA B . n B 1 112 LEU 112 278 278 LEU LEU B . n B 1 113 GLY 113 279 279 GLY GLY B . n B 1 114 ILE 114 280 280 ILE ILE B . n B 1 115 SER 115 281 281 SER SER B . n B 1 116 ARG 116 282 282 ARG ARG B . n B 1 117 ALA 117 283 283 ALA ALA B . n B 1 118 THR 118 284 284 THR THR B . n B 1 119 TYR 119 285 285 TYR TYR B . n B 1 120 TYR 120 286 286 TYR TYR B . n B 1 121 ARG 121 287 287 ARG ARG B . n B 1 122 LYS 122 288 288 LYS LYS B . n B 1 123 LEU 123 289 289 LEU LEU B . n B 1 124 LYS 124 290 290 LYS LYS B . n B 1 125 CYS 125 291 ? ? ? B . n B 1 126 ASP 126 292 ? ? ? B . n B 1 127 PRO 127 293 ? ? ? B . n B 1 128 ASP 128 294 ? ? ? B . n C 2 1 DA 1 3 1 DA DA C . n C 2 2 DA 2 4 2 DA DA C . n C 2 3 DT 3 5 3 DT DT C . n C 2 4 DG 4 6 4 DG DG C . n C 2 5 DA 5 7 5 DA DA C . n C 2 6 DG 6 8 6 DG DG C . n C 2 7 DA 7 9 7 DA DA C . n C 2 8 DC 8 10 8 DC DC C . n C 2 9 DC 9 11 9 DC DC C . n C 2 10 DA 10 12 10 DA DA C . n C 2 11 DG 11 13 11 DG DG C . n C 2 12 DA 12 14 12 DA DA C . n C 2 13 DT 13 15 13 DT DT C . n C 2 14 DA 14 16 14 DA DA C . n C 2 15 DA 15 17 15 DA DA C . n C 2 16 DG 16 18 16 DG DG C . n C 2 17 DC 17 19 17 DC DC C . n C 2 18 DC 18 20 18 DC DC C . n C 2 19 DT 19 21 19 DT DT C . n C 2 20 DT 20 22 20 DT DT C . n C 2 21 DA 21 23 ? ? ? C . n C 2 22 DT 22 24 ? ? ? C . n C 2 23 DC 23 25 ? ? ? C . n D 3 1 DG 1 13 1 DG DG D . n D 3 2 DA 2 14 2 DA DA D . n D 3 3 DT 3 15 3 DT DT D . n D 3 4 DA 4 16 4 DA DA D . n D 3 5 DA 5 17 5 DA DA D . n D 3 6 DG 6 18 6 DG DG D . n D 3 7 DG 7 19 7 DG DG D . n D 3 8 DC 8 20 8 DC DC D . n D 3 9 DT 9 21 9 DT DT D . n D 3 10 DT 10 22 10 DT DT D . n D 3 11 DA 11 23 11 DA DA D . n D 3 12 DT 12 24 12 DT DT D . n D 3 13 DC 13 25 13 DC DC D . n D 3 14 DT 14 26 14 DT DT D . n D 3 15 DG 15 27 15 DG DG D . n D 3 16 DG 16 28 16 DG DG D . n D 3 17 DT 17 29 17 DT DT D . n D 3 18 DC 18 30 18 DC DC D . n D 3 19 DT 19 31 19 DT DT D . n D 3 20 DC 20 32 20 DC DC D . n D 3 21 DA 21 33 ? ? ? D . n D 3 22 DT 22 34 ? ? ? D . n D 3 23 DT 23 35 ? ? ? D . n E 2 1 DA 1 3 1 DA DA E . n E 2 2 DA 2 4 2 DA DA E . n E 2 3 DT 3 5 3 DT DT E . n E 2 4 DG 4 6 4 DG DG E . n E 2 5 DA 5 7 5 DA DA E . n E 2 6 DG 6 8 6 DG DG E . n E 2 7 DA 7 9 7 DA DA E . n E 2 8 DC 8 10 8 DC DC E . n E 2 9 DC 9 11 9 DC DC E . n E 2 10 DA 10 12 10 DA DA E . n E 2 11 DG 11 13 11 DG DG E . n E 2 12 DA 12 14 12 DA DA E . n E 2 13 DT 13 15 13 DT DT E . n E 2 14 DA 14 16 14 DA DA E . n E 2 15 DA 15 17 15 DA DA E . n E 2 16 DG 16 18 16 DG DG E . n E 2 17 DC 17 19 17 DC DC E . n E 2 18 DC 18 20 18 DC DC E . n E 2 19 DT 19 21 19 DT DT E . n E 2 20 DT 20 22 20 DT DT E . n E 2 21 DA 21 23 21 DA DA E . n E 2 22 DT 22 24 ? ? ? E . n E 2 23 DC 23 25 ? ? ? E . n F 3 1 DG 1 13 1 DG DG F . n F 3 2 DA 2 14 2 DA DA F . n F 3 3 DT 3 15 3 DT DT F . n F 3 4 DA 4 16 4 DA DA F . n F 3 5 DA 5 17 5 DA DA F . n F 3 6 DG 6 18 6 DG DG F . n F 3 7 DG 7 19 7 DG DG F . n F 3 8 DC 8 20 8 DC DC F . n F 3 9 DT 9 21 9 DT DT F . n F 3 10 DT 10 22 10 DT DT F . n F 3 11 DA 11 23 11 DA DA F . n F 3 12 DT 12 24 12 DT DT F . n F 3 13 DC 13 25 13 DC DC F . n F 3 14 DT 14 26 14 DT DT F . n F 3 15 DG 15 27 15 DG DG F . n F 3 16 DG 16 28 16 DG DG F . n F 3 17 DT 17 29 17 DT DT F . n F 3 18 DC 18 30 18 DC DC F . n F 3 19 DT 19 31 19 DT DT F . n F 3 20 DC 20 32 20 DC DC F . n F 3 21 DA 21 33 ? ? ? F . n F 3 22 DT 22 34 ? ? ? F . n F 3 23 DT 23 35 ? ? ? F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 SO4 1 301 6922 SO4 SO4 A . H 4 SO4 1 301 6920 SO4 SO4 B . I 4 SO4 1 302 6921 SO4 SO4 B . J 4 SO4 1 303 6923 SO4 SO4 B . K 4 SO4 1 304 6924 SO4 SO4 B . L 5 HOH 1 401 2 HOH HOH A . L 5 HOH 2 402 3 HOH HOH A . L 5 HOH 3 403 7 HOH HOH A . L 5 HOH 4 404 8 HOH HOH A . L 5 HOH 5 405 11 HOH HOH A . L 5 HOH 6 406 15 HOH HOH A . L 5 HOH 7 407 17 HOH HOH A . L 5 HOH 8 408 21 HOH HOH A . L 5 HOH 9 409 24 HOH HOH A . L 5 HOH 10 410 25 HOH HOH A . M 5 HOH 1 401 1 HOH HOH B . M 5 HOH 2 402 4 HOH HOH B . M 5 HOH 3 403 6 HOH HOH B . M 5 HOH 4 404 9 HOH HOH B . M 5 HOH 5 405 10 HOH HOH B . M 5 HOH 6 406 12 HOH HOH B . M 5 HOH 7 407 13 HOH HOH B . M 5 HOH 8 408 14 HOH HOH B . M 5 HOH 9 409 16 HOH HOH B . M 5 HOH 10 410 18 HOH HOH B . M 5 HOH 11 411 19 HOH HOH B . M 5 HOH 12 412 20 HOH HOH B . M 5 HOH 13 413 26 HOH HOH B . M 5 HOH 14 414 27 HOH HOH B . N 5 HOH 1 101 5 HOH HOH D . N 5 HOH 2 102 23 HOH HOH D . O 5 HOH 1 101 22 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3VW4 _cell.length_a 47.662 _cell.length_b 61.824 _cell.length_c 273.508 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VW4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VW4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.49 _exptl_crystal.density_percent_sol 64.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '0.5M ammonium sulfate, 1.0M lithium sulfate, 0.1M sodium-citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-10-17 _diffrn_detector.details 'monochromator and mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9800 # _reflns.entry_id 3VW4 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 22951 _reflns.number_all 23141 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.133 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VW4 _refine.ls_number_reflns_obs 21787 _refine.ls_number_reflns_all 23141 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.22232 _refine.ls_R_factor_all 0.260 _refine.ls_R_factor_R_work 0.22014 _refine.ls_R_factor_R_free 0.26233 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1168 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.871 _refine.B_iso_mean 34.534 _refine.aniso_B[1][1] -0.83 _refine.aniso_B[2][2] 2.00 _refine.aniso_B[3][3] -1.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.440 _refine.pdbx_overall_ESU_R_Free 0.298 _refine.overall_SU_ML 0.191 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.645 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1972 _refine_hist.pdbx_number_atoms_nucleic_acid 1665 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 3689 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.015 0.015 ? 3920 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.193 1.648 ? 5644 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.627 5.000 ? 240 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 30.723 19.780 ? 91 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 22.801 15.000 ? 348 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 23.066 15.000 ? 26 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.128 0.200 ? 522 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.013 0.021 ? 2411 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.702 _refine_ls_shell.d_res_low 2.771 _refine_ls_shell.number_reflns_R_work 1376 _refine_ls_shell.R_factor_R_work 0.318 _refine_ls_shell.percent_reflns_obs 95.68 _refine_ls_shell.R_factor_R_free 0.423 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 given ? -0.976328 0.113415 -0.184178 -0.113122 -0.993507 -0.012130 -0.184358 0.008991 0.982818 43.76983 37.72441 4.07547 # _database_PDB_matrix.entry_id 3VW4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VW4 _struct.title 'Crystal structure of the DNA-binding domain of ColE2-P9 Rep in complex with the replication origin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VW4 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;helix-turn-helix, specific DNA-binding and unwinding of DNA duplex, cytosol, replication initiator protein, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q06B24_ECOLX Q06B24 1 ;RNYHLFEKVRKWAYRAIRQGWPVFSQWLDAVIQRVEMYNASLPVPLSPAECRAIGKSIAKYTHRKFSPEGFSAVQAARGR KGGTKSKRAAVPTSARSLKPWEALGISRATYYRKLKCDPD ; 175 ? 2 PDB 3VW4 3VW4 2 ? ? ? 3 PDB 3VW4 3VW4 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VW4 A 9 ? 128 ? Q06B24 175 ? 294 ? 175 294 2 1 3VW4 B 9 ? 128 ? Q06B24 175 ? 294 ? 175 294 3 2 3VW4 C 1 ? 23 ? 3VW4 3 ? 25 ? 3 25 4 2 3VW4 E 1 ? 23 ? 3VW4 3 ? 25 ? 3 25 5 3 3VW4 D 1 ? 23 ? 3VW4 13 ? 35 ? 13 35 6 3 3VW4 F 1 ? 23 ? 3VW4 13 ? 35 ? 13 35 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VW4 MET A 1 ? UNP Q06B24 ? ? 'expression tag' 167 1 1 3VW4 GLY A 2 ? UNP Q06B24 ? ? 'expression tag' 168 2 1 3VW4 HIS A 3 ? UNP Q06B24 ? ? 'expression tag' 169 3 1 3VW4 HIS A 4 ? UNP Q06B24 ? ? 'expression tag' 170 4 1 3VW4 HIS A 5 ? UNP Q06B24 ? ? 'expression tag' 171 5 1 3VW4 HIS A 6 ? UNP Q06B24 ? ? 'expression tag' 172 6 1 3VW4 HIS A 7 ? UNP Q06B24 ? ? 'expression tag' 173 7 1 3VW4 HIS A 8 ? UNP Q06B24 ? ? 'expression tag' 174 8 2 3VW4 MET B 1 ? UNP Q06B24 ? ? 'expression tag' 167 9 2 3VW4 GLY B 2 ? UNP Q06B24 ? ? 'expression tag' 168 10 2 3VW4 HIS B 3 ? UNP Q06B24 ? ? 'expression tag' 169 11 2 3VW4 HIS B 4 ? UNP Q06B24 ? ? 'expression tag' 170 12 2 3VW4 HIS B 5 ? UNP Q06B24 ? ? 'expression tag' 171 13 2 3VW4 HIS B 6 ? UNP Q06B24 ? ? 'expression tag' 172 14 2 3VW4 HIS B 7 ? UNP Q06B24 ? ? 'expression tag' 173 15 2 3VW4 HIS B 8 ? UNP Q06B24 ? ? 'expression tag' 174 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7080 ? 1 MORE -28 ? 1 'SSA (A^2)' 12390 ? 2 'ABSA (A^2)' 7540 ? 2 MORE -63 ? 2 'SSA (A^2)' 12670 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G,L,N 2 1 B,E,F,H,I,J,K,M,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 6 ? ILE A 25 ? HIS A 172 ILE A 191 1 ? 20 HELX_P HELX_P2 2 VAL A 31 ? LEU A 50 ? VAL A 197 LEU A 216 1 ? 20 HELX_P HELX_P3 3 SER A 55 ? PHE A 74 ? SER A 221 PHE A 240 1 ? 20 HELX_P HELX_P4 4 SER A 75 ? LYS A 93 ? SER A 241 LYS A 259 1 ? 19 HELX_P HELX_P5 5 SER A 102 ? LYS A 107 ? SER A 268 LYS A 273 1 ? 6 HELX_P HELX_P6 6 LYS A 107 ? LEU A 112 ? LYS A 273 LEU A 278 1 ? 6 HELX_P HELX_P7 7 SER A 115 ? CYS A 125 ? SER A 281 CYS A 291 1 ? 11 HELX_P HELX_P8 8 HIS B 8 ? ILE B 25 ? HIS B 174 ILE B 191 1 ? 18 HELX_P HELX_P9 9 VAL B 31 ? ALA B 48 ? VAL B 197 ALA B 214 1 ? 18 HELX_P HELX_P10 10 SER B 55 ? PHE B 74 ? SER B 221 PHE B 240 1 ? 20 HELX_P HELX_P11 11 SER B 75 ? SER B 94 ? SER B 241 SER B 260 1 ? 20 HELX_P HELX_P12 12 SER B 102 ? LYS B 107 ? SER B 268 LYS B 273 1 ? 6 HELX_P HELX_P13 13 TRP B 109 ? GLY B 113 ? TRP B 275 GLY B 279 5 ? 5 HELX_P HELX_P14 14 SER B 115 ? LYS B 124 ? SER B 281 LYS B 290 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 20 N3 ? ? C DG 6 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 20 O2 ? ? C DG 6 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 20 N4 ? ? C DG 6 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 19 N3 ? ? C DA 7 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 19 O4 ? ? C DA 7 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 18 O2 ? ? C DG 8 D DC 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog7 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 18 N3 ? ? C DG 8 D DC 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog8 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 17 N3 ? ? C DA 9 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 17 O4 ? ? C DA 9 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 16 N1 ? ? C DC 10 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 16 O6 ? ? C DC 10 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 16 N2 ? ? C DC 10 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 15 N1 ? ? C DC 11 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 15 O6 ? ? C DC 11 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 15 N2 ? ? C DC 11 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 14 N3 ? ? C DA 12 D DT 26 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog17 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 13 N3 ? ? C DG 13 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 13 O2 ? ? C DG 13 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 13 N4 ? ? C DG 13 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 14 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 14 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 15 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 15 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 16 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 16 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 15 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 17 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 15 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 17 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 16 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 18 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 16 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 18 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 16 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 18 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 17 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 19 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 17 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 19 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 17 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 19 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 18 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 20 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 18 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 20 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 18 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 20 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 19 O2 ? ? ? 1_555 D DA 5 N6 ? ? C DT 21 D DA 17 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog38 hydrog ? ? D DT 3 O2 ? ? ? 1_555 D DA 4 N6 ? ? D DT 15 D DA 16 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog39 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 20 N3 ? ? E DG 6 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 20 O2 ? ? E DG 6 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 20 N4 ? ? E DG 6 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 19 N3 ? ? E DA 7 F DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 19 O4 ? ? E DA 7 F DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 18 O2 ? ? E DG 8 F DC 30 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog45 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 17 N3 ? ? E DA 9 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 17 O4 ? ? E DA 9 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 16 N1 ? ? E DC 10 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 16 O6 ? ? E DC 10 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 16 N2 ? ? E DC 10 F DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DC 9 N3 ? ? ? 1_555 F DG 15 N1 ? ? E DC 11 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DC 9 N4 ? ? ? 1_555 F DG 15 O6 ? ? E DC 11 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DC 9 O2 ? ? ? 1_555 F DG 15 N2 ? ? E DC 11 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 14 N3 ? ? E DA 12 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 14 O4 ? ? E DA 12 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 13 N3 ? ? E DG 13 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 13 O2 ? ? E DG 13 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 13 N4 ? ? E DG 13 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DA 12 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 14 F DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DA 12 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 14 F DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DT 13 N3 ? ? ? 1_555 F DA 11 N1 ? ? E DT 15 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DT 13 O4 ? ? ? 1_555 F DA 11 N6 ? ? E DT 15 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DA 14 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 16 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DA 14 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 16 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DA 15 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 17 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DA 15 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 17 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DG 16 N1 ? ? ? 1_555 F DC 8 N3 ? ? E DG 18 F DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DG 16 N2 ? ? ? 1_555 F DC 8 O2 ? ? E DG 18 F DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DG 16 O6 ? ? ? 1_555 F DC 8 N4 ? ? E DG 18 F DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DC 17 N3 ? ? ? 1_555 F DG 7 N1 ? ? E DC 19 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DC 17 N4 ? ? ? 1_555 F DG 7 O6 ? ? E DC 19 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DC 17 O2 ? ? ? 1_555 F DG 7 N2 ? ? E DC 19 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DC 18 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 20 F DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DC 18 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 20 F DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DC 18 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 20 F DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 4 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software B SO4 301 ? 6 'BINDING SITE FOR RESIDUE SO4 B 301' AC3 Software B SO4 302 ? 5 'BINDING SITE FOR RESIDUE SO4 B 302' AC4 Software B SO4 303 ? 2 'BINDING SITE FOR RESIDUE SO4 B 303' AC5 Software B SO4 304 ? 4 'BINDING SITE FOR RESIDUE SO4 B 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 6 ? HIS A 172 . ? 1_555 ? 2 AC1 4 HIS A 7 ? HIS A 173 . ? 1_555 ? 3 AC1 4 HIS A 8 ? HIS A 174 . ? 1_555 ? 4 AC1 4 ARG A 9 ? ARG A 175 . ? 1_555 ? 5 AC2 6 HIS B 5 ? HIS B 171 . ? 1_555 ? 6 AC2 6 HIS B 6 ? HIS B 172 . ? 1_555 ? 7 AC2 6 HIS B 7 ? HIS B 173 . ? 1_555 ? 8 AC2 6 HIS B 8 ? HIS B 174 . ? 1_555 ? 9 AC2 6 ARG B 9 ? ARG B 175 . ? 1_555 ? 10 AC2 6 HOH M . ? HOH B 407 . ? 1_555 ? 11 AC3 5 HIS A 7 ? HIS A 173 . ? 1_555 ? 12 AC3 5 HIS B 8 ? HIS B 174 . ? 1_555 ? 13 AC3 5 ASN B 10 ? ASN B 176 . ? 1_555 ? 14 AC3 5 TYR B 11 ? TYR B 177 . ? 1_555 ? 15 AC3 5 DG F 1 ? DG F 13 . ? 1_555 ? 16 AC4 2 PRO B 56 ? PRO B 222 . ? 1_555 ? 17 AC4 2 ARG B 60 ? ARG B 226 . ? 1_555 ? 18 AC5 4 GLN A 27 ? GLN A 193 . ? 1_455 ? 19 AC5 4 GLY A 28 ? GLY A 194 . ? 1_455 ? 20 AC5 4 TRP B 20 ? TRP B 186 . ? 1_555 ? 21 AC5 4 ARG B 42 ? ARG B 208 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N2 C DG 8 ? ? O2 D DC 30 ? ? 2.15 2 1 N2 E DG 8 ? ? O2 F DC 30 ? ? 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A HIS 173 ? ? CD2 A HIS 173 ? ? 1.409 1.354 0.055 0.009 N 2 1 CG A HIS 237 ? ? CD2 A HIS 237 ? ? 1.422 1.354 0.068 0.009 N 3 1 CG B HIS 173 ? ? CD2 B HIS 173 ? ? 1.412 1.354 0.058 0.009 N 4 1 CG B HIS 178 ? ? CD2 B HIS 178 ? ? 1.434 1.354 0.080 0.009 N 5 1 CG B HIS 237 ? ? CD2 B HIS 237 ? ? 1.408 1.354 0.054 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 192 ? ? CZ B ARG 192 ? ? NH2 B ARG 192 ? ? 116.46 120.30 -3.84 0.50 N 2 1 NE B ARG 208 ? ? CZ B ARG 208 ? ? NH2 B ARG 208 ? ? 116.77 120.30 -3.53 0.50 N 3 1 "C3'" C DA 4 ? ? "O3'" C DA 4 ? ? P C DT 5 ? ? 128.56 119.70 8.86 1.20 Y 4 1 "C3'" C DG 6 ? ? "O3'" C DG 6 ? ? P C DA 7 ? ? 127.39 119.70 7.69 1.20 Y 5 1 "O5'" C DA 7 ? ? P C DA 7 ? ? OP1 C DA 7 ? ? 99.23 105.70 -6.47 0.90 N 6 1 "C3'" C DA 7 ? ? "O3'" C DA 7 ? ? P C DG 8 ? ? 128.29 119.70 8.59 1.20 Y 7 1 "C3'" C DC 10 ? ? "O3'" C DC 10 ? ? P C DC 11 ? ? 111.35 119.70 -8.35 1.20 Y 8 1 "C3'" C DC 11 ? ? "O3'" C DC 11 ? ? P C DA 12 ? ? 109.65 119.70 -10.05 1.20 Y 9 1 "O3'" C DA 16 ? ? P C DA 17 ? ? "O5'" C DA 17 ? ? 91.75 104.00 -12.25 1.90 Y 10 1 "O5'" C DG 18 ? ? P C DG 18 ? ? OP1 C DG 18 ? ? 98.68 105.70 -7.02 0.90 N 11 1 "C1'" C DG 18 ? ? "O4'" C DG 18 ? ? "C4'" C DG 18 ? ? 103.38 110.10 -6.72 1.00 N 12 1 "O3'" D DG 13 ? ? P D DA 14 ? ? "O5'" D DA 14 ? ? 117.71 104.00 13.71 1.90 Y 13 1 "O5'" D DT 15 ? ? P D DT 15 ? ? OP2 D DT 15 ? ? 97.25 105.70 -8.45 0.90 N 14 1 "O5'" D DA 17 ? ? P D DA 17 ? ? OP1 D DA 17 ? ? 98.49 105.70 -7.21 0.90 N 15 1 "O5'" D DA 17 ? ? P D DA 17 ? ? OP2 D DA 17 ? ? 121.29 110.70 10.59 1.20 N 16 1 "O5'" D DG 19 ? ? P D DG 19 ? ? OP1 D DG 19 ? ? 99.77 105.70 -5.93 0.90 N 17 1 "C3'" D DT 21 ? ? "O3'" D DT 21 ? ? P D DT 22 ? ? 128.87 119.70 9.17 1.20 Y 18 1 "C3'" D DT 22 ? ? "O3'" D DT 22 ? ? P D DA 23 ? ? 129.82 119.70 10.12 1.20 Y 19 1 "C3'" E DA 4 ? ? "O3'" E DA 4 ? ? P E DT 5 ? ? 127.77 119.70 8.07 1.20 Y 20 1 "C3'" E DT 5 ? ? "O3'" E DT 5 ? ? P E DG 6 ? ? 127.00 119.70 7.30 1.20 Y 21 1 "O4'" E DC 20 ? ? "C1'" E DC 20 ? ? N1 E DC 20 ? ? 110.19 108.30 1.89 0.30 N 22 1 "C3'" E DC 20 ? ? "O3'" E DC 20 ? ? P E DT 21 ? ? 130.21 119.70 10.51 1.20 Y 23 1 "O5'" E DT 21 ? ? P E DT 21 ? ? OP1 E DT 21 ? ? 123.05 110.70 12.35 1.20 N 24 1 "C3'" E DT 22 ? ? "O3'" E DT 22 ? ? P E DA 23 ? ? 131.10 119.70 11.40 1.20 Y 25 1 "O5'" F DG 13 ? ? P F DG 13 ? ? OP1 F DG 13 ? ? 125.40 110.70 14.70 1.20 N 26 1 "C3'" F DT 15 ? ? "O3'" F DT 15 ? ? P F DA 16 ? ? 129.88 119.70 10.18 1.20 Y 27 1 "C3'" F DA 17 ? ? "C2'" F DA 17 ? ? "C1'" F DA 17 ? ? 96.32 102.40 -6.08 0.80 N 28 1 "C3'" F DG 18 ? ? "O3'" F DG 18 ? ? P F DG 19 ? ? 129.25 119.70 9.55 1.20 Y 29 1 "O5'" F DC 20 ? ? P F DC 20 ? ? OP1 F DC 20 ? ? 118.35 110.70 7.65 1.20 N 30 1 "C3'" F DT 22 ? ? "O3'" F DT 22 ? ? P F DA 23 ? ? 129.99 119.70 10.29 1.20 Y 31 1 "C3'" F DT 24 ? ? "O3'" F DT 24 ? ? P F DC 25 ? ? 127.20 119.70 7.50 1.20 Y 32 1 "C3'" F DG 27 ? ? "O3'" F DG 27 ? ? P F DG 28 ? ? 128.52 119.70 8.82 1.20 Y 33 1 "C5'" F DG 28 ? ? "C4'" F DG 28 ? ? "O4'" F DG 28 ? ? 117.38 109.80 7.58 1.10 N 34 1 "C1'" F DG 28 ? ? "O4'" F DG 28 ? ? "C4'" F DG 28 ? ? 103.00 110.10 -7.10 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 259 ? ? -102.95 41.31 2 1 LYS A 273 ? ? 43.36 72.16 3 1 HIS B 172 ? ? -33.14 -80.09 4 1 ILE B 191 ? ? -49.06 -19.79 5 1 TRP B 195 ? ? 35.14 57.54 6 1 VAL B 197 ? ? -46.87 154.65 7 1 LYS B 273 ? ? 32.38 68.96 8 1 ALA B 277 ? ? -62.29 1.77 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 29.9230 16.5810 74.7320 0.0127 0.0330 0.0453 -0.0062 0.0035 0.0086 4.7071 3.3963 2.4524 -3.0529 -1.3860 2.1332 -0.0062 -0.1959 0.0868 -0.0993 0.0949 -0.0492 -0.1590 0.1430 -0.0886 'X-RAY DIFFRACTION' 2 ? refined 36.5570 12.9300 12.8900 1.0518 0.7475 0.2422 0.0570 0.0403 0.0942 7.0135 12.4873 16.3296 2.7826 0.6094 13.8304 -0.5486 0.4483 0.1837 0.4247 0.7015 -0.1210 0.8559 0.5646 -0.1529 'X-RAY DIFFRACTION' 3 ? refined 2.8790 20.0530 72.2030 0.0076 0.0264 0.0370 -0.0083 -0.0040 -0.0046 2.5020 4.0656 3.3213 -0.3408 -0.1534 -2.3367 0.0180 0.0194 -0.0532 -0.0892 0.0407 0.1192 0.1490 -0.1213 -0.0588 'X-RAY DIFFRACTION' 4 ? refined -0.7640 19.9100 11.7740 0.9911 0.9948 0.3389 -0.0207 0.0645 -0.0509 0.8187 3.0009 14.4801 0.3551 1.8128 -4.6053 0.0518 0.3260 -0.1289 -0.0547 0.6686 0.2516 0.0127 -0.0362 -0.7204 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 175 ? ? A 239 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 269 ? ? A 290 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 175 ? ? B 239 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 269 ? ? B 290 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 167 ? A MET 1 2 1 Y 1 A GLY 168 ? A GLY 2 3 1 Y 1 A HIS 169 ? A HIS 3 4 1 Y 1 A ASP 292 ? A ASP 126 5 1 Y 1 A PRO 293 ? A PRO 127 6 1 Y 1 A ASP 294 ? A ASP 128 7 1 Y 1 B MET 167 ? B MET 1 8 1 Y 1 B GLY 168 ? B GLY 2 9 1 Y 1 B HIS 169 ? B HIS 3 10 1 Y 1 B HIS 170 ? B HIS 4 11 1 Y 1 B CYS 291 ? B CYS 125 12 1 Y 1 B ASP 292 ? B ASP 126 13 1 Y 1 B PRO 293 ? B PRO 127 14 1 Y 1 B ASP 294 ? B ASP 128 15 1 Y 1 C DA 23 ? C DA 21 16 1 Y 1 C DT 24 ? C DT 22 17 1 Y 1 C DC 25 ? C DC 23 18 1 Y 1 D DA 33 ? D DA 21 19 1 Y 1 D DT 34 ? D DT 22 20 1 Y 1 D DT 35 ? D DT 23 21 1 Y 1 E DT 24 ? E DT 22 22 1 Y 1 E DC 25 ? E DC 23 23 1 Y 1 F DA 33 ? F DA 21 24 1 Y 1 F DT 34 ? F DT 22 25 1 Y 1 F DT 35 ? F DT 23 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 SO4 S S N N 447 SO4 O1 O N N 448 SO4 O2 O N N 449 SO4 O3 O N N 450 SO4 O4 O N N 451 THR N N N N 452 THR CA C N S 453 THR C C N N 454 THR O O N N 455 THR CB C N R 456 THR OG1 O N N 457 THR CG2 C N N 458 THR OXT O N N 459 THR H H N N 460 THR H2 H N N 461 THR HA H N N 462 THR HB H N N 463 THR HG1 H N N 464 THR HG21 H N N 465 THR HG22 H N N 466 THR HG23 H N N 467 THR HXT H N N 468 TRP N N N N 469 TRP CA C N S 470 TRP C C N N 471 TRP O O N N 472 TRP CB C N N 473 TRP CG C Y N 474 TRP CD1 C Y N 475 TRP CD2 C Y N 476 TRP NE1 N Y N 477 TRP CE2 C Y N 478 TRP CE3 C Y N 479 TRP CZ2 C Y N 480 TRP CZ3 C Y N 481 TRP CH2 C Y N 482 TRP OXT O N N 483 TRP H H N N 484 TRP H2 H N N 485 TRP HA H N N 486 TRP HB2 H N N 487 TRP HB3 H N N 488 TRP HD1 H N N 489 TRP HE1 H N N 490 TRP HE3 H N N 491 TRP HZ2 H N N 492 TRP HZ3 H N N 493 TRP HH2 H N N 494 TRP HXT H N N 495 TYR N N N N 496 TYR CA C N S 497 TYR C C N N 498 TYR O O N N 499 TYR CB C N N 500 TYR CG C Y N 501 TYR CD1 C Y N 502 TYR CD2 C Y N 503 TYR CE1 C Y N 504 TYR CE2 C Y N 505 TYR CZ C Y N 506 TYR OH O N N 507 TYR OXT O N N 508 TYR H H N N 509 TYR H2 H N N 510 TYR HA H N N 511 TYR HB2 H N N 512 TYR HB3 H N N 513 TYR HD1 H N N 514 TYR HD2 H N N 515 TYR HE1 H N N 516 TYR HE2 H N N 517 TYR HH H N N 518 TYR HXT H N N 519 VAL N N N N 520 VAL CA C N S 521 VAL C C N N 522 VAL O O N N 523 VAL CB C N N 524 VAL CG1 C N N 525 VAL CG2 C N N 526 VAL OXT O N N 527 VAL H H N N 528 VAL H2 H N N 529 VAL HA H N N 530 VAL HB H N N 531 VAL HG11 H N N 532 VAL HG12 H N N 533 VAL HG13 H N N 534 VAL HG21 H N N 535 VAL HG22 H N N 536 VAL HG23 H N N 537 VAL HXT H N N 538 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 SO4 S O1 doub N N 439 SO4 S O2 doub N N 440 SO4 S O3 sing N N 441 SO4 S O4 sing N N 442 THR N CA sing N N 443 THR N H sing N N 444 THR N H2 sing N N 445 THR CA C sing N N 446 THR CA CB sing N N 447 THR CA HA sing N N 448 THR C O doub N N 449 THR C OXT sing N N 450 THR CB OG1 sing N N 451 THR CB CG2 sing N N 452 THR CB HB sing N N 453 THR OG1 HG1 sing N N 454 THR CG2 HG21 sing N N 455 THR CG2 HG22 sing N N 456 THR CG2 HG23 sing N N 457 THR OXT HXT sing N N 458 TRP N CA sing N N 459 TRP N H sing N N 460 TRP N H2 sing N N 461 TRP CA C sing N N 462 TRP CA CB sing N N 463 TRP CA HA sing N N 464 TRP C O doub N N 465 TRP C OXT sing N N 466 TRP CB CG sing N N 467 TRP CB HB2 sing N N 468 TRP CB HB3 sing N N 469 TRP CG CD1 doub Y N 470 TRP CG CD2 sing Y N 471 TRP CD1 NE1 sing Y N 472 TRP CD1 HD1 sing N N 473 TRP CD2 CE2 doub Y N 474 TRP CD2 CE3 sing Y N 475 TRP NE1 CE2 sing Y N 476 TRP NE1 HE1 sing N N 477 TRP CE2 CZ2 sing Y N 478 TRP CE3 CZ3 doub Y N 479 TRP CE3 HE3 sing N N 480 TRP CZ2 CH2 doub Y N 481 TRP CZ2 HZ2 sing N N 482 TRP CZ3 CH2 sing Y N 483 TRP CZ3 HZ3 sing N N 484 TRP CH2 HH2 sing N N 485 TRP OXT HXT sing N N 486 TYR N CA sing N N 487 TYR N H sing N N 488 TYR N H2 sing N N 489 TYR CA C sing N N 490 TYR CA CB sing N N 491 TYR CA HA sing N N 492 TYR C O doub N N 493 TYR C OXT sing N N 494 TYR CB CG sing N N 495 TYR CB HB2 sing N N 496 TYR CB HB3 sing N N 497 TYR CG CD1 doub Y N 498 TYR CG CD2 sing Y N 499 TYR CD1 CE1 sing Y N 500 TYR CD1 HD1 sing N N 501 TYR CD2 CE2 doub Y N 502 TYR CD2 HD2 sing N N 503 TYR CE1 CZ doub Y N 504 TYR CE1 HE1 sing N N 505 TYR CE2 CZ sing Y N 506 TYR CE2 HE2 sing N N 507 TYR CZ OH sing N N 508 TYR OH HH sing N N 509 TYR OXT HXT sing N N 510 VAL N CA sing N N 511 VAL N H sing N N 512 VAL N H2 sing N N 513 VAL CA C sing N N 514 VAL CA CB sing N N 515 VAL CA HA sing N N 516 VAL C O doub N N 517 VAL C OXT sing N N 518 VAL CB CG1 sing N N 519 VAL CB CG2 sing N N 520 VAL CB HB sing N N 521 VAL CG1 HG11 sing N N 522 VAL CG1 HG12 sing N N 523 VAL CG1 HG13 sing N N 524 VAL CG2 HG21 sing N N 525 VAL CG2 HG22 sing N N 526 VAL CG2 HG23 sing N N 527 VAL OXT HXT sing N N 528 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VW4 'double helix' 3VW4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 4 1_555 D DC 20 1_555 0.086 -0.385 -0.074 2.403 -10.459 -1.728 1 C_DG6:DC32_D C 6 ? D 32 ? 19 1 1 C DA 5 1_555 D DT 19 1_555 1.102 -0.323 0.233 1.705 -10.811 -8.087 2 C_DA7:DT31_D C 7 ? D 31 ? 20 1 1 C DG 6 1_555 D DC 18 1_555 0.165 -0.584 0.055 -1.886 -6.191 2.583 3 C_DG8:DC30_D C 8 ? D 30 ? 22 1 1 C DA 7 1_555 D DT 17 1_555 -0.011 -0.297 0.235 2.638 -7.370 -4.157 4 C_DA9:DT29_D C 9 ? D 29 ? 20 1 1 C DC 8 1_555 D DG 16 1_555 1.419 -0.582 0.121 -1.995 -9.978 5.541 5 C_DC10:DG28_D C 10 ? D 28 ? 19 1 1 C DC 9 1_555 D DG 15 1_555 -0.384 -0.254 0.085 -9.120 -4.202 -10.948 6 C_DC11:DG27_D C 11 ? D 27 ? 19 1 1 C DA 10 1_555 D DT 14 1_555 0.039 0.219 0.748 19.205 -8.167 13.923 7 C_DA12:DT26_D C 12 ? D 26 ? ? 1 1 C DG 11 1_555 D DC 13 1_555 -0.062 -0.340 0.610 10.883 -15.981 3.145 8 C_DG13:DC25_D C 13 ? D 25 ? 19 1 1 C DA 12 1_555 D DT 12 1_555 -0.656 -0.301 0.047 -8.849 -1.488 -7.478 9 C_DA14:DT24_D C 14 ? D 24 ? 20 1 1 C DT 13 1_555 D DA 11 1_555 -0.178 -0.171 0.149 -3.460 -3.173 -2.813 10 C_DT15:DA23_D C 15 ? D 23 ? 20 1 1 C DA 14 1_555 D DT 10 1_555 0.371 0.005 -0.033 -1.343 -10.900 -4.513 11 C_DA16:DT22_D C 16 ? D 22 ? 20 1 1 C DA 15 1_555 D DT 9 1_555 0.059 -0.212 -0.027 5.478 -14.998 -1.402 12 C_DA17:DT21_D C 17 ? D 21 ? 20 1 1 C DG 16 1_555 D DC 8 1_555 -0.135 -0.277 -0.174 4.466 -18.230 0.156 13 C_DG18:DC20_D C 18 ? D 20 ? 19 1 1 C DC 17 1_555 D DG 7 1_555 0.205 -0.226 -0.257 9.309 -8.837 -5.176 14 C_DC19:DG19_D C 19 ? D 19 ? 19 1 1 C DC 18 1_555 D DG 6 1_555 0.231 -0.377 0.064 15.678 24.171 -1.090 15 C_DC20:DG18_D C 20 ? D 18 ? 19 1 1 C DT 19 1_555 D DA 5 1_555 6.592 -1.475 0.605 -25.852 46.415 83.545 16 C_DT21:DA17_D C 21 ? D 17 ? ? ? 1 D DT 3 1_555 D DA 4 1_555 6.278 0.388 -0.620 -21.241 16.346 3.171 17 D_DT15:DA16_D D 15 ? D 16 ? ? ? 1 E DG 4 1_555 F DC 20 1_555 -0.725 -0.578 0.256 1.535 -10.066 2.126 18 E_DG6:DC32_F E 6 ? F 32 ? 19 1 1 E DA 5 1_555 F DT 19 1_555 -0.135 -0.509 0.182 1.307 -10.341 -8.360 19 E_DA7:DT31_F E 7 ? F 31 ? 20 1 1 E DG 6 1_555 F DC 18 1_555 -0.865 -0.377 0.292 12.791 -8.661 11.241 20 E_DG8:DC30_F E 8 ? F 30 ? ? 1 1 E DA 7 1_555 F DT 17 1_555 0.599 -0.179 0.255 2.532 -8.927 -8.350 21 E_DA9:DT29_F E 9 ? F 29 ? 20 1 1 E DC 8 1_555 F DG 16 1_555 0.437 -0.476 0.078 1.475 -6.135 -4.552 22 E_DC10:DG28_F E 10 ? F 28 ? 19 1 1 E DC 9 1_555 F DG 15 1_555 -0.159 -0.329 -0.170 0.151 -5.844 -3.455 23 E_DC11:DG27_F E 11 ? F 27 ? 19 1 1 E DA 10 1_555 F DT 14 1_555 0.732 -0.278 0.407 15.937 -6.682 2.603 24 E_DA12:DT26_F E 12 ? F 26 ? 20 1 1 E DG 11 1_555 F DC 13 1_555 -0.216 -0.410 0.642 10.683 -14.148 -0.075 25 E_DG13:DC25_F E 13 ? F 25 ? 19 1 1 E DA 12 1_555 F DT 12 1_555 0.590 -0.366 -0.093 -11.062 0.306 -7.438 26 E_DA14:DT24_F E 14 ? F 24 ? 20 1 1 E DT 13 1_555 F DA 11 1_555 0.046 -0.287 0.275 2.481 -3.421 0.230 27 E_DT15:DA23_F E 15 ? F 23 ? 20 1 1 E DA 14 1_555 F DT 10 1_555 0.310 -0.132 -0.070 4.121 -11.367 -8.079 28 E_DA16:DT22_F E 16 ? F 22 ? 20 1 1 E DA 15 1_555 F DT 9 1_555 0.119 -0.370 0.190 8.449 -16.754 -0.790 29 E_DA17:DT21_F E 17 ? F 21 ? 20 1 1 E DG 16 1_555 F DC 8 1_555 -0.340 -0.089 0.320 8.991 -14.754 1.666 30 E_DG18:DC20_F E 18 ? F 20 ? 19 1 1 E DC 17 1_555 F DG 7 1_555 0.017 -0.320 -0.330 10.017 -7.306 -5.239 31 E_DC19:DG19_F E 19 ? F 19 ? 19 1 1 E DC 18 1_555 F DG 6 1_555 -0.043 -0.538 -0.201 18.272 20.225 -1.705 32 E_DC20:DG18_F E 20 ? F 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 4 1_555 D DC 20 1_555 C DA 5 1_555 D DT 19 1_555 -0.304 0.491 3.319 -3.762 3.577 44.740 0.312 0.050 3.360 4.681 4.922 45.025 1 CC_DG6DA7:DT31DC32_DD C 6 ? D 32 ? C 7 ? D 31 ? 1 C DA 5 1_555 D DT 19 1_555 C DG 6 1_555 D DC 18 1_555 1.438 -0.208 3.409 4.905 -2.158 23.341 0.262 -1.730 3.634 -5.245 -11.923 23.940 2 CC_DA7DG8:DC30DT31_DD C 7 ? D 31 ? C 8 ? D 30 ? 1 C DG 6 1_555 D DC 18 1_555 C DA 7 1_555 D DT 17 1_555 -0.465 -0.253 3.150 -1.821 3.372 35.769 -0.872 0.503 3.133 5.470 2.954 35.967 3 CC_DG8DA9:DT29DC30_DD C 8 ? D 30 ? C 9 ? D 29 ? 1 C DA 7 1_555 D DT 17 1_555 C DC 8 1_555 D DG 16 1_555 0.879 -1.071 3.443 0.619 -2.495 38.028 -1.304 -1.263 3.517 -3.824 -0.949 38.111 4 CC_DA9DC10:DG28DT29_DD C 9 ? D 29 ? C 10 ? D 28 ? 1 C DC 8 1_555 D DG 16 1_555 C DC 9 1_555 D DG 15 1_555 -1.457 -1.573 3.451 0.048 6.822 22.223 -6.223 3.634 2.844 17.187 -0.122 23.234 5 CC_DC10DC11:DG27DG28_DD C 10 ? D 28 ? C 11 ? D 27 ? 1 C DC 9 1_555 D DG 15 1_555 C DA 10 1_555 D DT 14 1_555 1.498 0.815 2.793 -1.468 10.050 32.830 -0.008 -2.742 2.845 17.273 2.523 34.324 6 CC_DC11DA12:DT26DG27_DD C 11 ? D 27 ? C 12 ? D 26 ? 1 C DA 10 1_555 D DT 14 1_555 C DG 11 1_555 D DC 13 1_555 -0.924 -0.246 3.364 -2.774 6.781 37.077 -1.283 1.057 3.328 10.537 4.310 37.769 7 CC_DA12DG13:DC25DT26_DD C 12 ? D 26 ? C 13 ? D 25 ? 1 C DG 11 1_555 D DC 13 1_555 C DA 12 1_555 D DT 12 1_555 -0.342 -0.705 3.676 3.718 -3.615 34.939 -0.558 1.185 3.674 -5.979 -6.150 35.310 8 CC_DG13DA14:DT24DC25_DD C 13 ? D 25 ? C 14 ? D 24 ? 1 C DA 12 1_555 D DT 12 1_555 C DT 13 1_555 D DA 11 1_555 -0.515 -0.432 3.203 -0.835 1.220 31.000 -1.038 0.805 3.196 2.282 1.561 31.034 9 CC_DA14DT15:DA23DT24_DD C 14 ? D 24 ? C 15 ? D 23 ? 1 C DT 13 1_555 D DA 11 1_555 C DA 14 1_555 D DT 10 1_555 -0.875 1.122 3.259 -2.654 -6.464 43.124 2.117 0.927 3.113 -8.726 3.583 43.660 10 CC_DT15DA16:DT22DA23_DD C 15 ? D 23 ? C 16 ? D 22 ? 1 C DA 14 1_555 D DT 10 1_555 C DA 15 1_555 D DT 9 1_555 0.039 0.473 3.260 0.369 -2.381 34.223 1.173 -0.009 3.221 -4.039 -0.626 34.305 11 CC_DA16DA17:DT21DT22_DD C 16 ? D 22 ? C 17 ? D 21 ? 1 C DA 15 1_555 D DT 9 1_555 C DG 16 1_555 D DC 8 1_555 0.824 0.350 3.375 1.248 3.737 32.183 -0.059 -1.248 3.421 6.710 -2.241 32.417 12 CC_DA17DG18:DC20DT21_DD C 17 ? D 21 ? C 18 ? D 20 ? 1 C DG 16 1_555 D DC 8 1_555 C DC 17 1_555 D DG 7 1_555 -0.425 -0.315 3.296 2.854 6.500 31.493 -1.714 1.269 3.120 11.789 -5.177 32.263 13 CC_DG18DC19:DG19DC20_DD C 18 ? D 20 ? C 19 ? D 19 ? 1 C DC 17 1_555 D DG 7 1_555 C DC 18 1_555 D DG 6 1_555 1.672 1.748 3.515 0.318 14.815 26.384 -0.321 -3.131 3.940 29.669 -0.636 30.197 14 CC_DC19DC20:DG18DG19_DD C 19 ? D 19 ? C 20 ? D 18 ? 1 E DG 4 1_555 F DC 20 1_555 E DA 5 1_555 F DT 19 1_555 -0.615 -0.104 3.374 0.068 4.295 36.482 -0.769 0.985 3.340 6.831 -0.109 36.726 15 EE_DG6DA7:DT31DC32_FF E 6 ? F 32 ? E 7 ? F 31 ? 1 E DA 5 1_555 F DT 19 1_555 E DG 6 1_555 F DC 18 1_555 1.511 0.227 3.033 0.082 2.586 25.851 -0.158 -3.340 3.045 5.761 -0.184 25.978 16 EE_DA7DG8:DC30DT31_FF E 7 ? F 31 ? E 8 ? F 30 ? 1 E DG 6 1_555 F DC 18 1_555 E DA 7 1_555 F DT 17 1_555 -0.951 -0.402 3.475 -3.296 -0.433 45.777 -0.476 0.914 3.535 -0.556 4.231 45.891 17 EE_DG8DA9:DT29DC30_FF E 8 ? F 30 ? E 9 ? F 29 ? 1 E DA 7 1_555 F DT 17 1_555 E DC 8 1_555 F DG 16 1_555 0.680 -1.494 3.335 -0.184 -2.058 31.304 -2.363 -1.294 3.420 -3.809 0.341 31.371 18 EE_DA9DC10:DG28DT29_FF E 9 ? F 29 ? E 10 ? F 28 ? 1 E DC 8 1_555 F DG 16 1_555 E DC 9 1_555 F DG 15 1_555 -0.668 -1.042 3.336 2.466 6.189 25.646 -3.872 2.094 2.932 13.651 -5.439 26.483 19 EE_DC10DC11:DG27DG28_FF E 10 ? F 28 ? E 11 ? F 27 ? 1 E DC 9 1_555 F DG 15 1_555 E DA 10 1_555 F DT 14 1_555 0.799 0.921 3.074 -2.435 8.684 36.838 0.344 -1.532 3.146 13.495 3.784 37.888 20 EE_DC11DA12:DT26DG27_FF E 11 ? F 27 ? E 12 ? F 26 ? 1 E DA 10 1_555 F DT 14 1_555 E DG 11 1_555 F DC 13 1_555 -0.017 -0.440 3.386 -4.169 4.094 30.661 -1.618 -0.783 3.274 7.656 7.795 31.200 21 EE_DA12DG13:DC25DT26_FF E 12 ? F 26 ? E 13 ? F 25 ? 1 E DG 11 1_555 F DC 13 1_555 E DA 12 1_555 F DT 12 1_555 -0.529 -0.564 3.819 6.361 -7.472 46.323 0.009 1.266 3.762 -9.374 -7.981 47.294 22 EE_DG13DA14:DT24DC25_FF E 13 ? F 25 ? E 14 ? F 24 ? 1 E DA 12 1_555 F DT 12 1_555 E DT 13 1_555 F DA 11 1_555 -0.090 -0.537 3.026 -1.328 3.027 23.886 -2.173 -0.175 2.937 7.270 3.190 24.111 23 EE_DA14DT15:DA23DT24_FF E 14 ? F 24 ? E 15 ? F 23 ? 1 E DT 13 1_555 F DA 11 1_555 E DA 14 1_555 F DT 10 1_555 -1.100 0.973 3.321 -1.609 -3.228 40.033 1.786 1.416 3.276 -4.704 2.344 40.189 24 EE_DT15DA16:DT22DA23_FF E 15 ? F 23 ? E 16 ? F 22 ? 1 E DA 14 1_555 F DT 10 1_555 E DA 15 1_555 F DT 9 1_555 0.041 0.530 3.155 -2.682 -5.775 35.496 1.636 -0.428 3.023 -9.379 4.355 36.044 25 EE_DA16DA17:DT21DT22_FF E 16 ? F 22 ? E 17 ? F 21 ? 1 E DA 15 1_555 F DT 9 1_555 E DG 16 1_555 F DC 8 1_555 0.611 0.436 3.251 -0.734 3.823 33.062 0.123 -1.189 3.266 6.688 1.284 33.284 26 EE_DA17DG18:DC20DT21_FF E 17 ? F 21 ? E 18 ? F 20 ? 1 E DG 16 1_555 F DC 8 1_555 E DC 17 1_555 F DG 7 1_555 -0.464 -0.382 3.328 5.963 8.938 30.574 -2.249 1.876 2.962 16.330 -10.894 32.364 27 EE_DG18DC19:DG19DC20_FF E 18 ? F 20 ? E 19 ? F 19 ? 1 E DC 17 1_555 F DG 7 1_555 E DC 18 1_555 F DG 6 1_555 1.763 1.759 3.415 3.729 11.772 21.992 -0.185 -2.708 4.057 28.179 -8.927 25.184 28 EE_DC19DC20:DG18DG19_FF E 19 ? F 19 ? E 20 ? F 18 ? # _atom_sites.entry_id 3VW4 _atom_sites.fract_transf_matrix[1][1] 0.020981 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016175 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003656 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_