HEADER TRANSPORT PROTEIN 11-SEP-12 3VX4 TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE-BINDING DOMAIN OF S. MUTANS COMA, TITLE 2 A BIFUNCTIONAL ATP-BINDING CASSETTE TRANSPORTER INVOLVED IN THE TITLE 3 QUORUM-SENSING PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ABC TRANSPORTER, ATP-BINDING PROTEIN COMA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: NUCLEOTIDE-BINDING DOMAIN, UNP RESIDUES 495-760; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: ATCC 700610 / UA159; SOURCE 5 GENE: SMU_286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC TRANSPORTER, ATP BINDING, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ISHII,T.YANO,A.OKAMOTO,T.MURAKAWA,H.HAYASHI REVDAT 3 08-NOV-23 3VX4 1 REMARK SEQADV LINK REVDAT 2 05-JUN-13 3VX4 1 JRNL REVDAT 1 17-APR-13 3VX4 0 JRNL AUTH S.ISHII,T.YANO,A.OKAMOTO,T.MURAKAWA,H.HAYASHI JRNL TITL BOUNDARY OF THE NUCLEOTIDE-BINDING DOMAIN OF STREPTOCOCCUS JRNL TITL 2 COMA BASED ON FUNCTIONAL AND STRUCTURAL ANALYSIS JRNL REF BIOCHEMISTRY V. 52 2545 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23534432 JRNL DOI 10.1021/BI3017069 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1295 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.623 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3812 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5147 ; 1.300 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 4.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;33.245 ;25.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 713 ;15.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.028 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2750 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000095609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MX-225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 7.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 8000, 0.1M REMARK 280 CAPS, 0.2M NACL, PH 10.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.28333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.14167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.28333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.14167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 494 REMARK 465 ALA A 495 REMARK 465 ARG A 496 REMARK 465 VAL A 497 REMARK 465 ALA A 498 REMARK 465 ASN A 499 REMARK 465 THR A 500 REMARK 465 ARG A 501 REMARK 465 LEU A 502 REMARK 465 ASN A 503 REMARK 465 GLU A 504 REMARK 465 VAL A 505 REMARK 465 TYR A 506 REMARK 465 LEU A 507 REMARK 465 VAL A 508 REMARK 465 GLU A 509 REMARK 465 SER A 510 REMARK 465 GLU A 511 REMARK 465 PHE A 512 REMARK 465 GLU A 513 REMARK 465 LYS A 514 REMARK 465 ASP A 515 REMARK 465 GLY A 516 REMARK 465 ASP A 517 REMARK 465 LEU A 518 REMARK 465 SER A 519 REMARK 465 GLU A 520 REMARK 465 ASN A 521 REMARK 465 HIS A 761 REMARK 465 HIS A 762 REMARK 465 HIS A 763 REMARK 465 HIS A 764 REMARK 465 HIS A 765 REMARK 465 HIS A 766 REMARK 465 MET D 494 REMARK 465 ALA D 495 REMARK 465 ARG D 496 REMARK 465 VAL D 497 REMARK 465 ALA D 498 REMARK 465 ASN D 499 REMARK 465 THR D 500 REMARK 465 ARG D 501 REMARK 465 LEU D 502 REMARK 465 ASN D 503 REMARK 465 GLU D 504 REMARK 465 VAL D 505 REMARK 465 TYR D 506 REMARK 465 LEU D 507 REMARK 465 VAL D 508 REMARK 465 GLU D 509 REMARK 465 SER D 510 REMARK 465 GLU D 511 REMARK 465 PHE D 512 REMARK 465 GLU D 513 REMARK 465 LYS D 514 REMARK 465 ASP D 515 REMARK 465 GLY D 516 REMARK 465 ASP D 517 REMARK 465 LEU D 518 REMARK 465 SER D 519 REMARK 465 GLU D 520 REMARK 465 HIS D 761 REMARK 465 HIS D 762 REMARK 465 HIS D 763 REMARK 465 HIS D 764 REMARK 465 HIS D 765 REMARK 465 HIS D 766 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS D 720 CG HIS D 720 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 532 51.70 34.76 REMARK 500 PHE A 539 133.26 -39.65 REMARK 500 ALA A 562 155.40 -49.56 REMARK 500 ASP A 661 103.06 -59.37 REMARK 500 PHE A 759 52.84 -142.10 REMARK 500 SER D 522 -112.96 60.99 REMARK 500 ASN D 532 54.60 39.48 REMARK 500 ALA D 562 157.51 -45.89 REMARK 500 LYS D 593 -8.49 -59.26 REMARK 500 GLN D 736 56.80 37.68 REMARK 500 GLN D 742 111.55 -163.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 568 OG1 REMARK 620 2 GLN A 609 OE1 91.2 REMARK 620 3 ATP A 801 O2B 92.0 171.2 REMARK 620 4 ATP A 801 O3G 173.6 83.8 92.5 REMARK 620 5 HOH A 920 O 92.5 77.6 94.1 82.6 REMARK 620 6 HOH A 964 O 89.1 94.9 93.3 95.2 172.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 568 OG1 REMARK 620 2 GLN D 609 OE1 98.9 REMARK 620 3 ATP D 801 O3G 161.0 86.8 REMARK 620 4 ATP D 801 O2B 80.8 173.2 91.4 REMARK 620 5 HOH D 977 O 77.3 83.9 85.5 89.5 REMARK 620 6 HOH D 982 O 91.3 89.4 106.9 97.4 165.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 802 DBREF 3VX4 A 495 760 UNP Q8DW05 Q8DW05_STRMU 495 760 DBREF 3VX4 D 495 760 UNP Q8DW05 Q8DW05_STRMU 495 760 SEQADV 3VX4 MET A 494 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 ALA A 690 UNP Q8DW05 GLU 690 ENGINEERED MUTATION SEQADV 3VX4 HIS A 761 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS A 762 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS A 763 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS A 764 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS A 765 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS A 766 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 MET D 494 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 ALA D 690 UNP Q8DW05 GLU 690 ENGINEERED MUTATION SEQADV 3VX4 HIS D 761 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS D 762 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS D 763 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS D 764 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS D 765 UNP Q8DW05 EXPRESSION TAG SEQADV 3VX4 HIS D 766 UNP Q8DW05 EXPRESSION TAG SEQRES 1 A 273 MET ALA ARG VAL ALA ASN THR ARG LEU ASN GLU VAL TYR SEQRES 2 A 273 LEU VAL GLU SER GLU PHE GLU LYS ASP GLY ASP LEU SER SEQRES 3 A 273 GLU ASN SER PHE LEU ASP GLY ASP ILE SER PHE GLU ASN SEQRES 4 A 273 LEU SER TYR LYS TYR GLY PHE GLY ARG ASP THR LEU SER SEQRES 5 A 273 ASP ILE ASN LEU SER ILE LYS LYS GLY SER LYS VAL SER SEQRES 6 A 273 LEU VAL GLY ALA SER GLY SER GLY LYS THR THR LEU ALA SEQRES 7 A 273 LYS LEU ILE VAL ASN PHE TYR GLU PRO ASN LYS GLY ILE SEQRES 8 A 273 VAL ARG ILE ASN GLY ASN ASP LEU LYS VAL ILE ASP LYS SEQRES 9 A 273 THR ALA LEU ARG ARG HIS ILE SER TYR LEU PRO GLN GLN SEQRES 10 A 273 ALA TYR VAL PHE SER GLY SER ILE MET ASP ASN LEU VAL SEQRES 11 A 273 LEU GLY ALA LYS GLU GLY THR SER GLN GLU ASP ILE ILE SEQRES 12 A 273 ARG ALA CYS GLU ILE ALA GLU ILE ARG SER ASP ILE GLU SEQRES 13 A 273 GLN MET PRO GLN GLY TYR GLN THR GLU LEU SER ASP GLY SEQRES 14 A 273 ALA GLY ILE SER GLY GLY GLN LYS GLN ARG ILE ALA LEU SEQRES 15 A 273 ALA ARG ALA LEU LEU THR GLN ALA PRO VAL LEU ILE LEU SEQRES 16 A 273 ASP ALA ALA THR SER SER LEU ASP ILE LEU THR GLU LYS SEQRES 17 A 273 LYS ILE ILE SER ASN LEU LEU GLN MET THR GLU LYS THR SEQRES 18 A 273 ILE ILE PHE VAL ALA HIS ARG LEU SER ILE SER GLN ARG SEQRES 19 A 273 THR ASP GLU VAL ILE VAL MET ASP GLN GLY LYS ILE VAL SEQRES 20 A 273 GLU GLN GLY THR HIS LYS GLU LEU LEU ALA LYS GLN GLY SEQRES 21 A 273 PHE TYR TYR ASN LEU PHE ASN HIS HIS HIS HIS HIS HIS SEQRES 1 D 273 MET ALA ARG VAL ALA ASN THR ARG LEU ASN GLU VAL TYR SEQRES 2 D 273 LEU VAL GLU SER GLU PHE GLU LYS ASP GLY ASP LEU SER SEQRES 3 D 273 GLU ASN SER PHE LEU ASP GLY ASP ILE SER PHE GLU ASN SEQRES 4 D 273 LEU SER TYR LYS TYR GLY PHE GLY ARG ASP THR LEU SER SEQRES 5 D 273 ASP ILE ASN LEU SER ILE LYS LYS GLY SER LYS VAL SER SEQRES 6 D 273 LEU VAL GLY ALA SER GLY SER GLY LYS THR THR LEU ALA SEQRES 7 D 273 LYS LEU ILE VAL ASN PHE TYR GLU PRO ASN LYS GLY ILE SEQRES 8 D 273 VAL ARG ILE ASN GLY ASN ASP LEU LYS VAL ILE ASP LYS SEQRES 9 D 273 THR ALA LEU ARG ARG HIS ILE SER TYR LEU PRO GLN GLN SEQRES 10 D 273 ALA TYR VAL PHE SER GLY SER ILE MET ASP ASN LEU VAL SEQRES 11 D 273 LEU GLY ALA LYS GLU GLY THR SER GLN GLU ASP ILE ILE SEQRES 12 D 273 ARG ALA CYS GLU ILE ALA GLU ILE ARG SER ASP ILE GLU SEQRES 13 D 273 GLN MET PRO GLN GLY TYR GLN THR GLU LEU SER ASP GLY SEQRES 14 D 273 ALA GLY ILE SER GLY GLY GLN LYS GLN ARG ILE ALA LEU SEQRES 15 D 273 ALA ARG ALA LEU LEU THR GLN ALA PRO VAL LEU ILE LEU SEQRES 16 D 273 ASP ALA ALA THR SER SER LEU ASP ILE LEU THR GLU LYS SEQRES 17 D 273 LYS ILE ILE SER ASN LEU LEU GLN MET THR GLU LYS THR SEQRES 18 D 273 ILE ILE PHE VAL ALA HIS ARG LEU SER ILE SER GLN ARG SEQRES 19 D 273 THR ASP GLU VAL ILE VAL MET ASP GLN GLY LYS ILE VAL SEQRES 20 D 273 GLU GLN GLY THR HIS LYS GLU LEU LEU ALA LYS GLN GLY SEQRES 21 D 273 PHE TYR TYR ASN LEU PHE ASN HIS HIS HIS HIS HIS HIS HET ATP A 801 31 HET MG A 802 1 HET ATP D 801 31 HET MG D 802 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *148(H2 O) HELIX 1 1 GLY A 566 VAL A 575 1 10 HELIX 2 2 ASP A 596 HIS A 603 1 8 HELIX 3 3 ILE A 618 LEU A 624 1 7 HELIX 4 4 SER A 631 ALA A 642 1 12 HELIX 5 5 ILE A 644 MET A 651 1 8 HELIX 6 6 GLN A 653 GLN A 656 5 4 HELIX 7 7 SER A 666 GLN A 682 1 17 HELIX 8 8 ASP A 696 GLN A 709 1 14 HELIX 9 9 ARG A 721 GLN A 726 1 6 HELIX 10 10 THR A 744 LYS A 751 1 8 HELIX 11 11 TYR A 755 PHE A 759 5 5 HELIX 12 12 ASN D 521 ASP D 525 5 5 HELIX 13 13 GLY D 566 VAL D 575 1 10 HELIX 14 14 ASP D 596 HIS D 603 1 8 HELIX 15 15 ILE D 618 LEU D 624 1 7 HELIX 16 16 SER D 631 ALA D 642 1 12 HELIX 17 17 ILE D 644 MET D 651 1 8 HELIX 18 18 GLN D 653 GLN D 656 5 4 HELIX 19 19 SER D 666 LEU D 680 1 15 HELIX 20 20 ASP D 696 GLN D 709 1 14 HELIX 21 21 ARG D 721 GLN D 726 1 6 HELIX 22 22 THR D 744 LYS D 751 1 8 HELIX 23 23 GLY D 753 ASN D 760 1 8 SHEET 1 A 4 LEU A 544 ILE A 551 0 SHEET 2 A 4 ILE A 528 TYR A 535 -1 N LEU A 533 O ILE A 547 SHEET 3 A 4 LYS A 582 ILE A 587 -1 O ARG A 586 N SER A 529 SHEET 4 A 4 ASN A 590 ASP A 591 -1 O ASN A 590 N ILE A 587 SHEET 1 B 6 ILE A 604 LEU A 607 0 SHEET 2 B 6 VAL A 685 ASP A 689 1 O ILE A 687 N LEU A 607 SHEET 3 B 6 THR A 714 VAL A 718 1 O THR A 714 N LEU A 686 SHEET 4 B 6 LYS A 556 VAL A 560 1 N VAL A 557 O PHE A 717 SHEET 5 B 6 GLU A 730 ASP A 735 1 O ILE A 732 N SER A 558 SHEET 6 B 6 LYS A 738 GLY A 743 -1 O GLY A 743 N VAL A 731 SHEET 1 C 2 GLY A 616 SER A 617 0 SHEET 2 C 2 GLU A 658 LEU A 659 -1 O LEU A 659 N GLY A 616 SHEET 1 D 4 LEU D 544 ILE D 551 0 SHEET 2 D 4 ILE D 528 TYR D 535 -1 N ILE D 528 O ILE D 551 SHEET 3 D 4 LYS D 582 ILE D 587 -1 O ARG D 586 N SER D 529 SHEET 4 D 4 ASN D 590 ASP D 591 -1 O ASN D 590 N ILE D 587 SHEET 1 E 6 ILE D 604 LEU D 607 0 SHEET 2 E 6 VAL D 685 ASP D 689 1 O ILE D 687 N SER D 605 SHEET 3 E 6 THR D 714 VAL D 718 1 O VAL D 718 N LEU D 688 SHEET 4 E 6 LYS D 556 GLY D 561 1 N VAL D 557 O PHE D 717 SHEET 5 E 6 GLU D 730 ASP D 735 1 O ILE D 732 N SER D 558 SHEET 6 E 6 LYS D 738 GLY D 743 -1 O GLU D 741 N VAL D 733 SHEET 1 F 2 GLY D 616 SER D 617 0 SHEET 2 F 2 GLU D 658 LEU D 659 -1 O LEU D 659 N GLY D 616 LINK OG1 THR A 568 MG MG A 802 1555 1555 2.04 LINK OE1 GLN A 609 MG MG A 802 1555 1555 1.89 LINK O2B ATP A 801 MG MG A 802 1555 1555 1.95 LINK O3G ATP A 801 MG MG A 802 1555 1555 2.09 LINK MG MG A 802 O HOH A 920 1555 1555 2.28 LINK MG MG A 802 O HOH A 964 1555 1555 2.01 LINK OG1 THR D 568 MG MG D 802 1555 1555 2.01 LINK OE1 GLN D 609 MG MG D 802 1555 1555 1.90 LINK O3G ATP D 801 MG MG D 802 1555 1555 2.01 LINK O2B ATP D 801 MG MG D 802 1555 1555 2.07 LINK MG MG D 802 O HOH D 977 1555 1555 2.32 LINK MG MG D 802 O HOH D 982 1555 1555 2.22 SITE 1 AC1 23 TYR A 537 THR A 543 ALA A 562 SER A 563 SITE 2 AC1 23 GLY A 564 SER A 565 GLY A 566 LYS A 567 SITE 3 AC1 23 THR A 568 THR A 569 GLN A 609 HIS A 720 SITE 4 AC1 23 MG A 802 HOH A 907 HOH A 920 HOH A 922 SITE 5 AC1 23 HOH A 964 GLY D 664 ILE D 665 SER D 666 SITE 6 AC1 23 GLY D 667 GLY D 668 GLN D 669 SITE 1 AC2 5 THR A 568 GLN A 609 ATP A 801 HOH A 920 SITE 2 AC2 5 HOH A 964 SITE 1 AC3 22 GLY A 664 ILE A 665 SER A 666 GLY A 667 SITE 2 AC3 22 GLY A 668 GLN A 669 SER A 694 TYR D 537 SITE 3 AC3 22 THR D 543 SER D 563 GLY D 564 SER D 565 SITE 4 AC3 22 GLY D 566 LYS D 567 THR D 568 THR D 569 SITE 5 AC3 22 GLN D 609 HIS D 720 MG D 802 HOH D 961 SITE 6 AC3 22 HOH D 977 HOH D 982 SITE 1 AC4 5 THR D 568 GLN D 609 ATP D 801 HOH D 977 SITE 2 AC4 5 HOH D 982 CRYST1 129.611 129.611 72.425 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007715 0.004454 0.000000 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013807 0.00000