HEADER IMMUNE SYSTEM 20-SEP-12 3VXR TITLE THE COMPLEX BETWEEN H27-14 TCR AND HLA-A24 BOUND TO HIV-1 NEF134- TITLE 2 10(WT) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-24 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-298; COMPND 5 SYNONYM: AW-24, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-9 ALPHA COMPND 6 CHAIN, MHC CLASS I ANTIGEN A*24; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: H27-14 TCR ALPHA CHAIN; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: H27-14 TCR BETA CHAIN; COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: 10-MER PEPTIDE FROM PROTEIN NEF; COMPND 23 CHAIN: C; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET21A(+); SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PET21A(+); SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_COMMON: HUMAN; SOURCE 33 ORGANISM_TAXID: 9606; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 36 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 37 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 38 EXPRESSION_SYSTEM_PLASMID: PET21D(+); SOURCE 39 MOL_ID: 5; SOURCE 40 SYNTHETIC: YES; SOURCE 41 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 42 ORGANISM_TAXID: 11676; SOURCE 43 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS HIV-1, NEF, IMMUNE SYSTEM, HLA-A24, T CELL RECEPTOR, MHC CLASS I, KEYWDS 2 IMMUNOGLOBURIN DOMAIN, TCR, MHC, IMMUNE RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMIZU,S.FUKAI,A.YAMAGATA,A.IWAMOTO REVDAT 3 08-NOV-23 3VXR 1 SEQADV REVDAT 2 20-NOV-13 3VXR 1 JRNL REVDAT 1 23-OCT-13 3VXR 0 JRNL AUTH A.SHIMIZU,A.KAWANA-TACHIKAWA,A.YAMAGATA,C.HAN,D.ZHU,Y.SATO, JRNL AUTH 2 H.NAKAMURA,T.KOIBUCHI,J.CARLSON,E.MARTIN,C.J.BRUMME,Y.SHI, JRNL AUTH 3 G.F.GAO,Z.L.BRUMME,S.FUKAI,A.IWAMOTO JRNL TITL STRUCTURE OF TCR AND ANTIGEN COMPLEXES AT AN IMMUNODOMINANT JRNL TITL 2 CTL EPITOPE IN HIV-1 INFECTION JRNL REF SCI REP V. 3 3097 2013 JRNL REFN ESSN 2045-2322 JRNL PMID 24192765 JRNL DOI 10.1038/SREP03097 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 35742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.455 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6769 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9182 ; 1.112 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 815 ; 6.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 351 ;34.641 ;23.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1117 ;17.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;19.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 961 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5285 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000095632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VXQ, 3I6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1M AMMONIUM PHOSPHATE REMARK 280 DIBASIC, 10MM BARIUM CHLORIDE DIHYDRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 110.72350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 110.72350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET D 0 REMARK 465 PRO D 195 REMARK 465 GLU D 196 REMARK 465 ASP D 197 REMARK 465 THR D 198 REMARK 465 PHE D 199 REMARK 465 PHE D 200 REMARK 465 PRO D 201 REMARK 465 SER D 202 REMARK 465 PRO D 203 REMARK 465 GLU D 204 REMARK 465 SER D 205 REMARK 465 SER D 206 REMARK 465 MET E 0 REMARK 465 ASP E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 151 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -119.10 45.55 REMARK 500 HIS A 114 98.58 -165.22 REMARK 500 PRO A 193 -70.36 -46.04 REMARK 500 ILE A 194 -53.42 76.22 REMARK 500 SER A 195 -174.04 -172.74 REMARK 500 HIS A 263 134.73 -170.77 REMARK 500 ASN B 21 -159.92 -151.53 REMARK 500 HIS B 31 127.18 -170.14 REMARK 500 TRP B 60 -0.19 65.48 REMARK 500 PRO D 40 133.28 -38.51 REMARK 500 ALA D 86 173.34 179.94 REMARK 500 GLU E 28 21.78 46.79 REMARK 500 ASN E 51 -114.69 52.13 REMARK 500 SER E 73 -127.15 49.80 REMARK 500 ARG E 81 73.64 41.36 REMARK 500 TYR E 150 -60.90 -90.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VXM RELATED DB: PDB REMARK 900 RELATED ID: 3VXN RELATED DB: PDB REMARK 900 RELATED ID: 3VXO RELATED DB: PDB REMARK 900 RELATED ID: 3VXP RELATED DB: PDB REMARK 900 RELATED ID: 3VXQ RELATED DB: PDB REMARK 900 RELATED ID: 3VXS RELATED DB: PDB REMARK 900 RELATED ID: 3VXT RELATED DB: PDB REMARK 900 RELATED ID: 3VXU RELATED DB: PDB DBREF 3VXR A 1 274 UNP P05534 1A24_HUMAN 25 298 DBREF 3VXR B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3VXR C 1 10 UNP Q9YYU8 Q9YYU8_9HIV1 134 143 DBREF 3VXR D 0 206 PDB 3VXR 3VXR 0 206 DBREF 3VXR E 0 243 PDB 3VXR 3VXR 0 243 SEQADV 3VXR MET A 0 UNP P05534 EXPRESSION TAG SEQADV 3VXR MET B 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 275 MET GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 A 275 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 275 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 275 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 275 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 A 275 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 A 275 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 275 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 A 275 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 275 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 275 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 275 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 275 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 A 275 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 275 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 A 275 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 275 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 275 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 275 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 275 ARG TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 D 207 MET LYS GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER SEQRES 2 D 207 VAL PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE SEQRES 3 D 207 THR ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN SEQRES 4 D 207 ASP PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SEQRES 5 D 207 SER SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SEQRES 6 D 207 SER LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE SEQRES 7 D 207 ALA ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS SEQRES 8 D 207 ALA VAL ARG MET ASP SER SER TYR LYS LEU ILE PHE GLY SEQRES 9 D 207 SER GLY THR ARG LEU LEU VAL ARG PRO ASP ILE GLN ASN SEQRES 10 D 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 244 MET ASP THR GLY VAL SER GLN ASN PRO ARG HIS LYS ILE SEQRES 2 E 244 THR LYS ARG GLY GLN ASN VAL THR PHE ARG CYS ASP PRO SEQRES 3 E 244 ILE SER GLU HIS ASN ARG LEU TYR TRP TYR ARG GLN THR SEQRES 4 E 244 LEU GLY GLN GLY PRO GLU PHE LEU THR TYR PHE GLN ASN SEQRES 5 E 244 GLU ALA GLN LEU GLU LYS SER ARG LEU LEU SER ASP ARG SEQRES 6 E 244 PHE SER ALA GLU ARG PRO LYS GLY SER PHE SER THR LEU SEQRES 7 E 244 GLU ILE GLN ARG THR GLU GLN GLY ASP SER ALA MET TYR SEQRES 8 E 244 LEU CYS ALA SER SER SER TRP ASP THR GLY GLU LEU PHE SEQRES 9 E 244 PHE GLY GLU GLY SER ARG LEU THR VAL LEU GLU ASP LEU SEQRES 10 E 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 C 10 ARG TYR PRO LEU THR PHE GLY TRP CYS PHE FORMUL 6 HOH *264(H2 O) HELIX 1 1 ALA A 49 GLU A 55 5 7 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 VAL A 152 GLY A 162 1 11 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLU A 253 GLN A 255 5 3 HELIX 8 8 GLN D 81 SER D 85 5 5 HELIX 9 9 ARG D 165 ASP D 168 5 4 HELIX 10 10 ALA D 184 PHE D 189 1 6 HELIX 11 11 GLU E 83 SER E 87 5 5 HELIX 12 12 SER E 130 GLN E 138 1 9 HELIX 13 13 ALA E 197 ASN E 202 1 6 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 HIS A 192 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 HIS A 192 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 5 VAL D 4 ILE D 7 0 SHEET 2 H 5 LEU D 19 PHE D 25 -1 O ASN D 22 N ILE D 7 SHEET 3 H 5 ARG D 72 ILE D 77 -1 O LEU D 75 N LEU D 21 SHEET 4 H 5 LEU D 62 ASP D 67 -1 N ASN D 63 O TYR D 76 SHEET 5 H 5 GLU D 56 SER D 59 -1 N GLN D 57 O ALA D 64 SHEET 1 I 5 ALA D 10 PRO D 14 0 SHEET 2 I 5 THR D 106 ARG D 111 1 O LEU D 109 N LEU D 11 SHEET 3 I 5 ALA D 86 MET D 94 -1 N ALA D 86 O LEU D 108 SHEET 4 I 5 ILE D 30 GLN D 38 -1 N TYR D 31 O ARG D 93 SHEET 5 I 5 LEU D 44 GLN D 51 -1 O THR D 45 N ARG D 37 SHEET 1 J 4 ALA D 10 PRO D 14 0 SHEET 2 J 4 THR D 106 ARG D 111 1 O LEU D 109 N LEU D 11 SHEET 3 J 4 ALA D 86 MET D 94 -1 N ALA D 86 O LEU D 108 SHEET 4 J 4 ILE D 101 PHE D 102 -1 O ILE D 101 N VAL D 92 SHEET 1 K 4 ALA D 120 ARG D 125 0 SHEET 2 K 4 SER D 133 THR D 138 -1 O LEU D 136 N TYR D 122 SHEET 3 K 4 PHE D 169 SER D 178 -1 O ALA D 176 N CYS D 135 SHEET 4 K 4 VAL D 154 ILE D 156 -1 N TYR D 155 O TRP D 177 SHEET 1 L 4 ALA D 120 ARG D 125 0 SHEET 2 L 4 SER D 133 THR D 138 -1 O LEU D 136 N TYR D 122 SHEET 3 L 4 PHE D 169 SER D 178 -1 O ALA D 176 N CYS D 135 SHEET 4 L 4 CYS D 160 MET D 164 -1 N MET D 164 O PHE D 169 SHEET 1 M 4 SER E 5 ASN E 7 0 SHEET 2 M 4 VAL E 19 ASP E 24 -1 O ARG E 22 N ASN E 7 SHEET 3 M 4 SER E 75 ILE E 79 -1 O LEU E 77 N PHE E 21 SHEET 4 M 4 PHE E 65 GLU E 68 -1 N SER E 66 O GLU E 78 SHEET 1 N 6 HIS E 10 LYS E 14 0 SHEET 2 N 6 SER E 108 LEU E 113 1 O LEU E 113 N THR E 13 SHEET 3 N 6 ALA E 88 SER E 95 -1 N TYR E 90 O SER E 108 SHEET 4 N 6 ARG E 31 GLN E 37 -1 N TYR E 33 O ALA E 93 SHEET 5 N 6 GLU E 44 GLN E 50 -1 O GLU E 44 N ARG E 36 SHEET 6 N 6 ALA E 53 LYS E 57 -1 O ALA E 53 N GLN E 50 SHEET 1 O 4 HIS E 10 LYS E 14 0 SHEET 2 O 4 SER E 108 LEU E 113 1 O LEU E 113 N THR E 13 SHEET 3 O 4 ALA E 88 SER E 95 -1 N TYR E 90 O SER E 108 SHEET 4 O 4 LEU E 102 PHE E 104 -1 O PHE E 103 N SER E 94 SHEET 1 P 4 GLU E 123 PHE E 127 0 SHEET 2 P 4 LYS E 139 PHE E 149 -1 O VAL E 143 N PHE E 127 SHEET 3 P 4 TYR E 187 SER E 196 -1 O TYR E 187 N PHE E 149 SHEET 4 P 4 VAL E 169 THR E 171 -1 N CYS E 170 O ARG E 192 SHEET 1 Q 4 GLU E 123 PHE E 127 0 SHEET 2 Q 4 LYS E 139 PHE E 149 -1 O VAL E 143 N PHE E 127 SHEET 3 Q 4 TYR E 187 SER E 196 -1 O TYR E 187 N PHE E 149 SHEET 4 Q 4 LEU E 176 LYS E 177 -1 N LEU E 176 O ALA E 188 SHEET 1 R 4 LYS E 163 VAL E 165 0 SHEET 2 R 4 VAL E 154 VAL E 160 -1 N VAL E 160 O LYS E 163 SHEET 3 R 4 HIS E 206 PHE E 213 -1 O GLN E 210 N SER E 157 SHEET 4 R 4 GLN E 232 TRP E 239 -1 O VAL E 234 N VAL E 211 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.06 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.07 SSBOND 4 CYS D 23 CYS D 90 1555 1555 2.02 SSBOND 5 CYS D 135 CYS D 185 1555 1555 2.03 SSBOND 6 CYS D 160 CYS E 170 1555 1555 2.03 SSBOND 7 CYS E 23 CYS E 92 1555 1555 2.03 SSBOND 8 CYS E 144 CYS E 209 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 -1.99 CISPEP 2 HIS B 31 PRO B 32 0 6.68 CISPEP 3 ILE D 7 PRO D 8 0 -6.39 CISPEP 4 ASN E 7 PRO E 8 0 -5.22 CRYST1 221.447 47.740 113.994 90.00 119.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004516 0.000000 0.002598 0.00000 SCALE2 0.000000 0.020947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010121 0.00000