data_3VXX # _entry.id 3VXX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VXX pdb_00003vxx 10.2210/pdb3vxx/pdb NDB NA2049 ? ? RCSB RCSB095638 ? ? WWPDB D_1000095638 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3VXV . unspecified PDB 3VYB . unspecified PDB 3VYQ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VXX _pdbx_database_status.recvd_initial_deposition_date 2012-09-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Otani, J.' 1 'Arita, K.' 2 'Kato, T.' 3 'Kinoshita, M.' 4 'Ariyoshi, M.' 5 'Shirakawa, M.' 6 # _citation.id primary _citation.title 'Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 6351 _citation.page_last 6362 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23316048 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.431098 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Otani, J.' 1 ? primary 'Arita, K.' 2 ? primary 'Kato, T.' 3 ? primary 'Kinoshita, M.' 4 ? primary 'Kimura, H.' 5 ? primary 'Suetake, I.' 6 ? primary 'Tajima, S.' 7 ? primary 'Ariyoshi, M.' 8 ? primary 'Shirakawa, M.' 9 ? # _cell.entry_id 3VXX _cell.length_a 89.182 _cell.length_b 93.829 _cell.length_c 55.357 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VXX _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 7829.089 1 3.2.2.- ? 'methyl CpG binding domain, UNP residues 69-136' ? 2 polymer syn ;DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') ; 4263.809 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') ; 4325.828 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 6 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 6 water nat water 18.015 123 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG SGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG A ? 2 polydeoxyribonucleotide no yes '(DG)(DT)(DC)(DA)(DC)(DT)(DA)(DC)(5CM)(DG)(DG)(DA)(DC)(DA)' GTCACTACCGGACA B ? 3 polydeoxyribonucleotide no yes '(DG)(DT)(DC)(5CM)(DG)(DG)(DT)(DA)(DG)(DT)(DG)(DA)(DC)(DT)' GTCCGGTAGTGACT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 HIS n 1 4 LYS n 1 5 PRO n 1 6 VAL n 1 7 PRO n 1 8 CYS n 1 9 GLY n 1 10 TRP n 1 11 GLU n 1 12 ARG n 1 13 VAL n 1 14 VAL n 1 15 LYS n 1 16 GLN n 1 17 ARG n 1 18 LEU n 1 19 SER n 1 20 GLY n 1 21 LYS n 1 22 THR n 1 23 ALA n 1 24 GLY n 1 25 LYS n 1 26 PHE n 1 27 ASP n 1 28 VAL n 1 29 TYR n 1 30 PHE n 1 31 ILE n 1 32 SER n 1 33 PRO n 1 34 GLN n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 PHE n 1 39 ARG n 1 40 SER n 1 41 LYS n 1 42 ARG n 1 43 SER n 1 44 LEU n 1 45 ALA n 1 46 ASN n 1 47 TYR n 1 48 LEU n 1 49 LEU n 1 50 LYS n 1 51 ASN n 1 52 GLY n 1 53 GLU n 1 54 THR n 1 55 PHE n 1 56 LEU n 1 57 LYS n 1 58 PRO n 1 59 GLU n 1 60 ASP n 1 61 PHE n 1 62 ASN n 1 63 PHE n 1 64 THR n 1 65 VAL n 1 66 LEU n 1 67 PRO n 1 68 LYS n 1 69 GLY n 2 1 DG n 2 2 DT n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DA n 2 8 DC n 2 9 5CM n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DA n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 5CM n 3 5 DG n 3 6 DG n 3 7 DT n 3 8 DA n 3 9 DG n 3 10 DT n 3 11 DG n 3 12 DA n 3 13 DC n 3 14 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mbd4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'chemical synthesis' 3 1 sample ? ? ? ? ? 'chemical synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MBD4_MOUSE Q9Z2D7 1 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG 69 ? 2 PDB 3VXX 3VXX 2 ? ? ? 3 PDB 3VXX 3VXX 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VXX A 2 ? 69 ? Q9Z2D7 69 ? 136 ? 69 136 2 2 3VXX B 1 ? 14 ? 3VXX 1 ? 14 ? 1 14 3 3 3VXX C 1 ? 14 ? 3VXX 1 ? 14 ? 1 14 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3VXX _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9Z2D7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 68 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VXX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_percent_sol 65.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '7% PEG 10000, 0.1M sodium acetate, 0.2M sodium chloride, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-11-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3VXX _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.2 _reflns.number_obs 12048 _reflns.number_all 12096 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.B_iso_Wilson_estimate 41.310 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.477 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3VXX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12027 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.339 _refine.ls_d_res_high 2.204 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.1965 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1955 _refine.ls_R_factor_R_free 0.2145 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.77 _refine.ls_number_reflns_R_free 574 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -13.1184 _refine.aniso_B[2][2] 11.4286 _refine.aniso_B[3][3] 1.6898 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.347 _refine.solvent_model_param_bsol 42.734 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3VXV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.B_iso_max 78.830 _refine.B_iso_min 20.150 _refine.pdbx_overall_phase_error 25.1500 _refine.occupancy_max 1.000 _refine.occupancy_min 0.460 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 511 _refine_hist.pdbx_number_atoms_nucleic_acid 570 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 1240 _refine_hist.d_res_high 2.204 _refine_hist.d_res_low 28.339 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1201 'X-RAY DIFFRACTION' ? f_angle_d 1.193 ? ? 1727 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 23.213 ? ? 471 'X-RAY DIFFRACTION' ? f_chiral_restr 0.062 ? ? 183 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 126 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.2040 2.4257 4 100.0000 2830 . 0.2721 0.3409 . 142 . 2972 . 'X-RAY DIFFRACTION' . 2.4257 2.7764 4 100.0000 2828 . 0.2601 0.3333 . 141 . 2969 . 'X-RAY DIFFRACTION' . 2.7764 3.4970 4 100.0000 2858 . 0.1913 0.2073 . 133 . 2991 . 'X-RAY DIFFRACTION' . 3.4970 28.3414 4 99.0000 2937 . 0.1684 0.1738 . 158 . 3095 . 'X-RAY DIFFRACTION' . # _struct.entry_id 3VXX _struct.title 'Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VXX _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'methyl CpG binding domain, protein-DNA complex, versatile base recognition, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 4 ? L N N 4 ? M N N 6 ? N N N 6 ? O N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 40 ? GLY A 52 ? SER A 107 GLY A 119 1 ? 13 HELX_P HELX_P2 2 LYS A 57 ? PHE A 61 ? LYS A 124 PHE A 128 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 8 SG ? ? A CYS 75 A CYS 75 3_555 ? ? ? ? ? ? ? 2.056 ? ? covale1 covale both ? B DC 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DC 8 B 5CM 9 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? B 5CM 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B 5CM 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? C DC 3 "O3'" ? ? ? 1_555 C 5CM 4 P ? ? C DC 3 C 5CM 4 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? C 5CM 4 "O3'" ? ? ? 1_555 C DG 5 P ? ? C 5CM 4 C DG 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 1 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 1 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 1 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 2 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 2 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 4 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 4 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 5 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 5 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 5 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 6 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 6 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 7 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 7 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 8 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 8 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 8 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B 5CM 9 N3 ? ? ? 1_555 C DG 5 N1 ? ? B 5CM 9 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B 5CM 9 N4 ? ? ? 1_555 C DG 5 O6 ? ? B 5CM 9 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B 5CM 9 O2 ? ? ? 1_555 C DG 5 N2 ? ? B 5CM 9 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C 5CM 4 N3 ? ? B DG 10 C 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C 5CM 4 O2 ? ? B DG 10 C 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C 5CM 4 N4 ? ? B DG 10 C 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 12 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 12 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 13 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 13 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 13 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 11 ? GLN A 16 ? GLU A 78 GLN A 83 A 2 PHE A 26 ? ILE A 31 ? PHE A 93 ILE A 98 A 3 LYS A 37 ? PHE A 38 ? LYS A 104 PHE A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 13 ? N VAL A 80 O TYR A 29 ? O TYR A 96 A 2 3 N PHE A 30 ? N PHE A 97 O PHE A 38 ? O PHE A 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 201 ? 7 'BINDING SITE FOR RESIDUE ACT A 201' AC2 Software A ACT 202 ? 6 'BINDING SITE FOR RESIDUE ACT A 202' AC3 Software A ACT 203 ? 4 'BINDING SITE FOR RESIDUE ACT A 203' AC4 Software A ACT 204 ? 3 'BINDING SITE FOR RESIDUE ACT A 204' AC5 Software A EDO 205 ? 6 'BINDING SITE FOR RESIDUE EDO A 205' AC6 Software A EDO 206 ? 5 'BINDING SITE FOR RESIDUE EDO A 206' AC7 Software A EDO 207 ? 2 'BINDING SITE FOR RESIDUE EDO A 207' AC8 Software B ACT 101 ? 5 'BINDING SITE FOR RESIDUE ACT B 101' AC9 Software C ACT 101 ? 3 'BINDING SITE FOR RESIDUE ACT C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 53 ? GLU A 120 . ? 1_555 ? 2 AC1 7 GLU A 53 ? GLU A 120 . ? 3_555 ? 3 AC1 7 PHE A 55 ? PHE A 122 . ? 1_555 ? 4 AC1 7 DG B 1 ? DG B 1 . ? 8_455 ? 5 AC1 7 ACT K . ? ACT B 101 . ? 8_455 ? 6 AC1 7 DT C 14 ? DT C 14 . ? 6_555 ? 7 AC1 7 DT C 14 ? DT C 14 . ? 8_455 ? 8 AC2 6 LYS A 25 ? LYS A 92 . ? 1_555 ? 9 AC2 6 PHE A 26 ? PHE A 93 . ? 1_555 ? 10 AC2 6 ASP A 27 ? ASP A 94 . ? 1_555 ? 11 AC2 6 HOH M . ? HOH A 331 . ? 1_555 ? 12 AC2 6 DC B 8 ? DC B 8 . ? 1_555 ? 13 AC2 6 HOH N . ? HOH B 211 . ? 1_555 ? 14 AC3 4 VAL A 6 ? VAL A 73 . ? 1_555 ? 15 AC3 4 PRO A 7 ? PRO A 74 . ? 1_555 ? 16 AC3 4 GLY A 9 ? GLY A 76 . ? 1_555 ? 17 AC3 4 TRP A 10 ? TRP A 77 . ? 1_555 ? 18 AC4 3 GLN A 34 ? GLN A 101 . ? 1_555 ? 19 AC4 3 ASN A 51 ? ASN A 118 . ? 1_555 ? 20 AC4 3 GLU A 53 ? GLU A 120 . ? 1_555 ? 21 AC5 6 GLN A 16 ? GLN A 83 . ? 1_555 ? 22 AC5 6 ARG A 17 ? ARG A 84 . ? 1_555 ? 23 AC5 6 LEU A 18 ? LEU A 85 . ? 1_555 ? 24 AC5 6 HOH M . ? HOH A 319 . ? 1_555 ? 25 AC5 6 DC C 3 ? DC C 3 . ? 1_555 ? 26 AC5 6 5CM C 4 ? 5CM C 4 . ? 1_555 ? 27 AC6 5 PHE A 26 ? PHE A 93 . ? 1_555 ? 28 AC6 5 PHE A 63 ? PHE A 130 . ? 3_555 ? 29 AC6 5 THR A 64 ? THR A 131 . ? 3_555 ? 30 AC6 5 VAL A 65 ? VAL A 132 . ? 3_555 ? 31 AC6 5 DA B 7 ? DA B 7 . ? 1_555 ? 32 AC7 2 LEU A 66 ? LEU A 133 . ? 1_555 ? 33 AC7 2 PRO A 67 ? PRO A 134 . ? 1_555 ? 34 AC8 5 ACT D . ? ACT A 201 . ? 8_555 ? 35 AC8 5 DT B 2 ? DT B 2 . ? 1_555 ? 36 AC8 5 DC B 3 ? DC B 3 . ? 1_555 ? 37 AC8 5 DC C 13 ? DC C 13 . ? 1_555 ? 38 AC8 5 DT C 14 ? DT C 14 . ? 3_654 ? 39 AC9 3 DC B 13 ? DC B 13 . ? 1_555 ? 40 AC9 3 DT C 2 ? DT C 2 . ? 1_555 ? 41 AC9 3 DC C 3 ? DC C 3 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VXX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VXX _atom_sites.fract_transf_matrix[1][1] 0.011213 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010658 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018065 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 68 ? ? ? A . n A 1 2 GLY 2 69 ? ? ? A . n A 1 3 HIS 3 70 ? ? ? A . n A 1 4 LYS 4 71 ? ? ? A . n A 1 5 PRO 5 72 72 PRO PRO A . n A 1 6 VAL 6 73 73 VAL VAL A . n A 1 7 PRO 7 74 74 PRO PRO A . n A 1 8 CYS 8 75 75 CYS CYS A . n A 1 9 GLY 9 76 76 GLY GLY A . n A 1 10 TRP 10 77 77 TRP TRP A . n A 1 11 GLU 11 78 78 GLU GLU A . n A 1 12 ARG 12 79 79 ARG ARG A . n A 1 13 VAL 13 80 80 VAL VAL A . n A 1 14 VAL 14 81 81 VAL VAL A . n A 1 15 LYS 15 82 82 LYS LYS A . n A 1 16 GLN 16 83 83 GLN GLN A . n A 1 17 ARG 17 84 84 ARG ARG A . n A 1 18 LEU 18 85 85 LEU LEU A . n A 1 19 SER 19 86 86 SER SER A . n A 1 20 GLY 20 87 87 GLY GLY A . n A 1 21 LYS 21 88 88 LYS LYS A . n A 1 22 THR 22 89 89 THR THR A . n A 1 23 ALA 23 90 90 ALA ALA A . n A 1 24 GLY 24 91 91 GLY GLY A . n A 1 25 LYS 25 92 92 LYS LYS A . n A 1 26 PHE 26 93 93 PHE PHE A . n A 1 27 ASP 27 94 94 ASP ASP A . n A 1 28 VAL 28 95 95 VAL VAL A . n A 1 29 TYR 29 96 96 TYR TYR A . n A 1 30 PHE 30 97 97 PHE PHE A . n A 1 31 ILE 31 98 98 ILE ILE A . n A 1 32 SER 32 99 99 SER SER A . n A 1 33 PRO 33 100 100 PRO PRO A . n A 1 34 GLN 34 101 101 GLN GLN A . n A 1 35 GLY 35 102 102 GLY GLY A . n A 1 36 LEU 36 103 103 LEU LEU A . n A 1 37 LYS 37 104 104 LYS LYS A . n A 1 38 PHE 38 105 105 PHE PHE A . n A 1 39 ARG 39 106 106 ARG ARG A . n A 1 40 SER 40 107 107 SER SER A . n A 1 41 LYS 41 108 108 LYS LYS A . n A 1 42 ARG 42 109 109 ARG ARG A . n A 1 43 SER 43 110 110 SER SER A . n A 1 44 LEU 44 111 111 LEU LEU A . n A 1 45 ALA 45 112 112 ALA ALA A . n A 1 46 ASN 46 113 113 ASN ASN A . n A 1 47 TYR 47 114 114 TYR TYR A . n A 1 48 LEU 48 115 115 LEU LEU A . n A 1 49 LEU 49 116 116 LEU LEU A . n A 1 50 LYS 50 117 117 LYS LYS A . n A 1 51 ASN 51 118 118 ASN ASN A . n A 1 52 GLY 52 119 119 GLY GLY A . n A 1 53 GLU 53 120 120 GLU GLU A . n A 1 54 THR 54 121 121 THR THR A . n A 1 55 PHE 55 122 122 PHE PHE A . n A 1 56 LEU 56 123 123 LEU LEU A . n A 1 57 LYS 57 124 124 LYS LYS A . n A 1 58 PRO 58 125 125 PRO PRO A . n A 1 59 GLU 59 126 126 GLU GLU A . n A 1 60 ASP 60 127 127 ASP ASP A . n A 1 61 PHE 61 128 128 PHE PHE A . n A 1 62 ASN 62 129 129 ASN ASN A . n A 1 63 PHE 63 130 130 PHE PHE A . n A 1 64 THR 64 131 131 THR THR A . n A 1 65 VAL 65 132 132 VAL VAL A . n A 1 66 LEU 66 133 133 LEU LEU A . n A 1 67 PRO 67 134 134 PRO PRO A . n A 1 68 LYS 68 135 ? ? ? A . n A 1 69 GLY 69 136 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 5CM 9 9 9 5CM 5CM B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DA 14 14 14 DA DA B . n C 3 1 DG 1 1 1 DG DG C . n C 3 2 DT 2 2 2 DT DT C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 5CM 4 4 4 5CM 5CM C . n C 3 5 DG 5 5 5 DG DG C . n C 3 6 DG 6 6 6 DG DG C . n C 3 7 DT 7 7 7 DT DT C . n C 3 8 DA 8 8 8 DA DA C . n C 3 9 DG 9 9 9 DG DG C . n C 3 10 DT 10 10 10 DT DT C . n C 3 11 DG 11 11 11 DG DG C . n C 3 12 DA 12 12 12 DA DA C . n C 3 13 DC 13 13 13 DC DC C . n C 3 14 DT 14 14 14 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT 1 201 1 ACT ACT A . E 4 ACT 1 202 2 ACT ACT A . F 4 ACT 1 203 5 ACT ACT A . G 4 ACT 1 204 6 ACT ACT A . H 5 EDO 1 205 10 EDO EDO A . I 5 EDO 1 206 12 EDO EDO A . J 5 EDO 1 207 13 EDO EDO A . K 4 ACT 1 101 4 ACT ACT B . L 4 ACT 1 101 3 ACT ACT C . M 6 HOH 1 301 2 HOH HOH A . M 6 HOH 2 302 3 HOH HOH A . M 6 HOH 3 303 7 HOH HOH A . M 6 HOH 4 304 11 HOH HOH A . M 6 HOH 5 305 12 HOH HOH A . M 6 HOH 6 306 14 HOH HOH A . M 6 HOH 7 307 16 HOH HOH A . M 6 HOH 8 308 19 HOH HOH A . M 6 HOH 9 309 24 HOH HOH A . M 6 HOH 10 310 26 HOH HOH A . M 6 HOH 11 311 27 HOH HOH A . M 6 HOH 12 312 28 HOH HOH A . M 6 HOH 13 313 34 HOH HOH A . M 6 HOH 14 314 36 HOH HOH A . M 6 HOH 15 315 39 HOH HOH A . M 6 HOH 16 316 40 HOH HOH A . M 6 HOH 17 317 42 HOH HOH A . M 6 HOH 18 318 44 HOH HOH A . M 6 HOH 19 319 46 HOH HOH A . M 6 HOH 20 320 47 HOH HOH A . M 6 HOH 21 321 49 HOH HOH A . M 6 HOH 22 322 52 HOH HOH A . M 6 HOH 23 323 53 HOH HOH A . M 6 HOH 24 324 54 HOH HOH A . M 6 HOH 25 325 58 HOH HOH A . M 6 HOH 26 326 63 HOH HOH A . M 6 HOH 27 327 64 HOH HOH A . M 6 HOH 28 328 65 HOH HOH A . M 6 HOH 29 329 68 HOH HOH A . M 6 HOH 30 330 70 HOH HOH A . M 6 HOH 31 331 72 HOH HOH A . M 6 HOH 32 332 75 HOH HOH A . M 6 HOH 33 333 80 HOH HOH A . M 6 HOH 34 334 83 HOH HOH A . M 6 HOH 35 335 84 HOH HOH A . M 6 HOH 36 336 87 HOH HOH A . M 6 HOH 37 337 94 HOH HOH A . M 6 HOH 38 338 96 HOH HOH A . M 6 HOH 39 339 99 HOH HOH A . M 6 HOH 40 340 100 HOH HOH A . M 6 HOH 41 341 101 HOH HOH A . M 6 HOH 42 342 104 HOH HOH A . M 6 HOH 43 343 105 HOH HOH A . M 6 HOH 44 344 106 HOH HOH A . M 6 HOH 45 345 108 HOH HOH A . M 6 HOH 46 346 109 HOH HOH A . M 6 HOH 47 347 110 HOH HOH A . M 6 HOH 48 348 116 HOH HOH A . M 6 HOH 49 349 119 HOH HOH A . M 6 HOH 50 350 123 HOH HOH A . M 6 HOH 51 351 32 HOH HOH A . M 6 HOH 52 352 15 HOH HOH A . N 6 HOH 1 201 8 HOH HOH B . N 6 HOH 2 202 9 HOH HOH B . N 6 HOH 3 203 10 HOH HOH B . N 6 HOH 4 204 17 HOH HOH B . N 6 HOH 5 205 18 HOH HOH B . N 6 HOH 6 206 20 HOH HOH B . N 6 HOH 7 207 22 HOH HOH B . N 6 HOH 8 208 30 HOH HOH B . N 6 HOH 9 209 38 HOH HOH B . N 6 HOH 10 210 41 HOH HOH B . N 6 HOH 11 211 45 HOH HOH B . N 6 HOH 12 212 48 HOH HOH B . N 6 HOH 13 213 51 HOH HOH B . N 6 HOH 14 214 55 HOH HOH B . N 6 HOH 15 215 61 HOH HOH B . N 6 HOH 16 216 62 HOH HOH B . N 6 HOH 17 217 66 HOH HOH B . N 6 HOH 18 218 69 HOH HOH B . N 6 HOH 19 219 76 HOH HOH B . N 6 HOH 20 220 79 HOH HOH B . N 6 HOH 21 221 88 HOH HOH B . N 6 HOH 22 222 89 HOH HOH B . N 6 HOH 23 223 90 HOH HOH B . N 6 HOH 24 224 93 HOH HOH B . N 6 HOH 25 225 97 HOH HOH B . N 6 HOH 26 226 102 HOH HOH B . N 6 HOH 27 227 111 HOH HOH B . N 6 HOH 28 228 112 HOH HOH B . N 6 HOH 29 229 114 HOH HOH B . N 6 HOH 30 230 115 HOH HOH B . N 6 HOH 31 231 117 HOH HOH B . N 6 HOH 32 232 122 HOH HOH B . O 6 HOH 1 201 92 HOH HOH C . O 6 HOH 2 202 1 HOH HOH C . O 6 HOH 3 203 4 HOH HOH C . O 6 HOH 4 204 5 HOH HOH C . O 6 HOH 5 205 6 HOH HOH C . O 6 HOH 6 206 13 HOH HOH C . O 6 HOH 7 207 21 HOH HOH C . O 6 HOH 8 208 23 HOH HOH C . O 6 HOH 9 209 25 HOH HOH C . O 6 HOH 10 210 29 HOH HOH C . O 6 HOH 11 211 31 HOH HOH C . O 6 HOH 12 212 33 HOH HOH C . O 6 HOH 13 213 35 HOH HOH C . O 6 HOH 14 214 37 HOH HOH C . O 6 HOH 15 215 43 HOH HOH C . O 6 HOH 16 216 50 HOH HOH C . O 6 HOH 17 217 56 HOH HOH C . O 6 HOH 18 218 57 HOH HOH C . O 6 HOH 19 219 59 HOH HOH C . O 6 HOH 20 220 60 HOH HOH C . O 6 HOH 21 221 67 HOH HOH C . O 6 HOH 22 222 71 HOH HOH C . O 6 HOH 23 223 73 HOH HOH C . O 6 HOH 24 224 74 HOH HOH C . O 6 HOH 25 225 77 HOH HOH C . O 6 HOH 26 226 78 HOH HOH C . O 6 HOH 27 227 81 HOH HOH C . O 6 HOH 28 228 82 HOH HOH C . O 6 HOH 29 229 85 HOH HOH C . O 6 HOH 30 230 86 HOH HOH C . O 6 HOH 31 231 91 HOH HOH C . O 6 HOH 32 232 95 HOH HOH C . O 6 HOH 33 233 98 HOH HOH C . O 6 HOH 34 234 103 HOH HOH C . O 6 HOH 35 235 107 HOH HOH C . O 6 HOH 36 236 113 HOH HOH C . O 6 HOH 37 237 118 HOH HOH C . O 6 HOH 38 238 120 HOH HOH C . O 6 HOH 39 239 121 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5CM 9 B 5CM 9 ? DC ? 2 C 5CM 4 C 5CM 4 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5080 ? 1 MORE -4 ? 1 'SSA (A^2)' 10280 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 207 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id N _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2013-08-14 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.4960 12.0971 4.4118 0.2086 0.2184 0.1876 -0.0364 -0.0034 0.0066 0.1975 0.6312 0.7690 -0.2888 0.2369 -0.0399 0.0093 0.1466 0.0347 -0.1660 0.0460 -0.0066 -0.0516 0.0524 -0.0326 'X-RAY DIFFRACTION' 2 ? refined 18.9353 11.7890 -13.9496 0.2592 0.2831 0.3023 -0.0793 -0.0121 0.1062 2.3468 1.1846 0.2642 1.4976 0.1516 0.3444 -0.1097 -0.3115 -0.3255 -0.2639 -0.0099 -0.2258 -0.1719 -0.1087 0.0512 'X-RAY DIFFRACTION' 3 ? refined 22.7568 13.1583 -11.3946 0.2233 0.3830 0.2568 -0.0566 0.0195 -0.0170 1.2729 0.5810 0.4689 -0.3261 0.4259 -0.5276 -0.2826 -0.0808 0.1478 -0.2369 0.1178 -0.1358 0.0670 -0.0054 0.1290 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 72 ? ? A 134 ? ? ? ;(chain 'A' and (resseq 72:134)) ; 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 14 ? ? ? ;(chain 'B' and (resseq 1:14)) ; 'X-RAY DIFFRACTION' 3 3 C 1 ? ? C 14 ? ? ? ;(chain 'C' and (resseq 1:14)) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 234 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 110.56 108.30 2.26 0.30 N 2 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.66 108.30 2.36 0.30 N 3 1 "O4'" C DC 3 ? ? "C4'" C DC 3 ? ? "C3'" C DC 3 ? ? 101.36 104.50 -3.14 0.40 N 4 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.98 108.30 2.68 0.30 N 5 1 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 110.64 108.30 2.34 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 68 ? A SER 1 2 1 Y 1 A GLY 69 ? A GLY 2 3 1 Y 1 A HIS 70 ? A HIS 3 4 1 Y 1 A LYS 71 ? A LYS 4 5 1 Y 1 A LYS 135 ? A LYS 68 6 1 Y 1 A GLY 136 ? A GLY 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 CYS N N N N 118 CYS CA C N R 119 CYS C C N N 120 CYS O O N N 121 CYS CB C N N 122 CYS SG S N N 123 CYS OXT O N N 124 CYS H H N N 125 CYS H2 H N N 126 CYS HA H N N 127 CYS HB2 H N N 128 CYS HB3 H N N 129 CYS HG H N N 130 CYS HXT H N N 131 DA OP3 O N N 132 DA P P N N 133 DA OP1 O N N 134 DA OP2 O N N 135 DA "O5'" O N N 136 DA "C5'" C N N 137 DA "C4'" C N R 138 DA "O4'" O N N 139 DA "C3'" C N S 140 DA "O3'" O N N 141 DA "C2'" C N N 142 DA "C1'" C N R 143 DA N9 N Y N 144 DA C8 C Y N 145 DA N7 N Y N 146 DA C5 C Y N 147 DA C6 C Y N 148 DA N6 N N N 149 DA N1 N Y N 150 DA C2 C Y N 151 DA N3 N Y N 152 DA C4 C Y N 153 DA HOP3 H N N 154 DA HOP2 H N N 155 DA "H5'" H N N 156 DA "H5''" H N N 157 DA "H4'" H N N 158 DA "H3'" H N N 159 DA "HO3'" H N N 160 DA "H2'" H N N 161 DA "H2''" H N N 162 DA "H1'" H N N 163 DA H8 H N N 164 DA H61 H N N 165 DA H62 H N N 166 DA H2 H N N 167 DC OP3 O N N 168 DC P P N N 169 DC OP1 O N N 170 DC OP2 O N N 171 DC "O5'" O N N 172 DC "C5'" C N N 173 DC "C4'" C N R 174 DC "O4'" O N N 175 DC "C3'" C N S 176 DC "O3'" O N N 177 DC "C2'" C N N 178 DC "C1'" C N R 179 DC N1 N N N 180 DC C2 C N N 181 DC O2 O N N 182 DC N3 N N N 183 DC C4 C N N 184 DC N4 N N N 185 DC C5 C N N 186 DC C6 C N N 187 DC HOP3 H N N 188 DC HOP2 H N N 189 DC "H5'" H N N 190 DC "H5''" H N N 191 DC "H4'" H N N 192 DC "H3'" H N N 193 DC "HO3'" H N N 194 DC "H2'" H N N 195 DC "H2''" H N N 196 DC "H1'" H N N 197 DC H41 H N N 198 DC H42 H N N 199 DC H5 H N N 200 DC H6 H N N 201 DG OP3 O N N 202 DG P P N N 203 DG OP1 O N N 204 DG OP2 O N N 205 DG "O5'" O N N 206 DG "C5'" C N N 207 DG "C4'" C N R 208 DG "O4'" O N N 209 DG "C3'" C N S 210 DG "O3'" O N N 211 DG "C2'" C N N 212 DG "C1'" C N R 213 DG N9 N Y N 214 DG C8 C Y N 215 DG N7 N Y N 216 DG C5 C Y N 217 DG C6 C N N 218 DG O6 O N N 219 DG N1 N N N 220 DG C2 C N N 221 DG N2 N N N 222 DG N3 N N N 223 DG C4 C Y N 224 DG HOP3 H N N 225 DG HOP2 H N N 226 DG "H5'" H N N 227 DG "H5''" H N N 228 DG "H4'" H N N 229 DG "H3'" H N N 230 DG "HO3'" H N N 231 DG "H2'" H N N 232 DG "H2''" H N N 233 DG "H1'" H N N 234 DG H8 H N N 235 DG H1 H N N 236 DG H21 H N N 237 DG H22 H N N 238 DT OP3 O N N 239 DT P P N N 240 DT OP1 O N N 241 DT OP2 O N N 242 DT "O5'" O N N 243 DT "C5'" C N N 244 DT "C4'" C N R 245 DT "O4'" O N N 246 DT "C3'" C N S 247 DT "O3'" O N N 248 DT "C2'" C N N 249 DT "C1'" C N R 250 DT N1 N N N 251 DT C2 C N N 252 DT O2 O N N 253 DT N3 N N N 254 DT C4 C N N 255 DT O4 O N N 256 DT C5 C N N 257 DT C7 C N N 258 DT C6 C N N 259 DT HOP3 H N N 260 DT HOP2 H N N 261 DT "H5'" H N N 262 DT "H5''" H N N 263 DT "H4'" H N N 264 DT "H3'" H N N 265 DT "HO3'" H N N 266 DT "H2'" H N N 267 DT "H2''" H N N 268 DT "H1'" H N N 269 DT H3 H N N 270 DT H71 H N N 271 DT H72 H N N 272 DT H73 H N N 273 DT H6 H N N 274 EDO C1 C N N 275 EDO O1 O N N 276 EDO C2 C N N 277 EDO O2 O N N 278 EDO H11 H N N 279 EDO H12 H N N 280 EDO HO1 H N N 281 EDO H21 H N N 282 EDO H22 H N N 283 EDO HO2 H N N 284 GLN N N N N 285 GLN CA C N S 286 GLN C C N N 287 GLN O O N N 288 GLN CB C N N 289 GLN CG C N N 290 GLN CD C N N 291 GLN OE1 O N N 292 GLN NE2 N N N 293 GLN OXT O N N 294 GLN H H N N 295 GLN H2 H N N 296 GLN HA H N N 297 GLN HB2 H N N 298 GLN HB3 H N N 299 GLN HG2 H N N 300 GLN HG3 H N N 301 GLN HE21 H N N 302 GLN HE22 H N N 303 GLN HXT H N N 304 GLU N N N N 305 GLU CA C N S 306 GLU C C N N 307 GLU O O N N 308 GLU CB C N N 309 GLU CG C N N 310 GLU CD C N N 311 GLU OE1 O N N 312 GLU OE2 O N N 313 GLU OXT O N N 314 GLU H H N N 315 GLU H2 H N N 316 GLU HA H N N 317 GLU HB2 H N N 318 GLU HB3 H N N 319 GLU HG2 H N N 320 GLU HG3 H N N 321 GLU HE2 H N N 322 GLU HXT H N N 323 GLY N N N N 324 GLY CA C N N 325 GLY C C N N 326 GLY O O N N 327 GLY OXT O N N 328 GLY H H N N 329 GLY H2 H N N 330 GLY HA2 H N N 331 GLY HA3 H N N 332 GLY HXT H N N 333 HIS N N N N 334 HIS CA C N S 335 HIS C C N N 336 HIS O O N N 337 HIS CB C N N 338 HIS CG C Y N 339 HIS ND1 N Y N 340 HIS CD2 C Y N 341 HIS CE1 C Y N 342 HIS NE2 N Y N 343 HIS OXT O N N 344 HIS H H N N 345 HIS H2 H N N 346 HIS HA H N N 347 HIS HB2 H N N 348 HIS HB3 H N N 349 HIS HD1 H N N 350 HIS HD2 H N N 351 HIS HE1 H N N 352 HIS HE2 H N N 353 HIS HXT H N N 354 HOH O O N N 355 HOH H1 H N N 356 HOH H2 H N N 357 ILE N N N N 358 ILE CA C N S 359 ILE C C N N 360 ILE O O N N 361 ILE CB C N S 362 ILE CG1 C N N 363 ILE CG2 C N N 364 ILE CD1 C N N 365 ILE OXT O N N 366 ILE H H N N 367 ILE H2 H N N 368 ILE HA H N N 369 ILE HB H N N 370 ILE HG12 H N N 371 ILE HG13 H N N 372 ILE HG21 H N N 373 ILE HG22 H N N 374 ILE HG23 H N N 375 ILE HD11 H N N 376 ILE HD12 H N N 377 ILE HD13 H N N 378 ILE HXT H N N 379 LEU N N N N 380 LEU CA C N S 381 LEU C C N N 382 LEU O O N N 383 LEU CB C N N 384 LEU CG C N N 385 LEU CD1 C N N 386 LEU CD2 C N N 387 LEU OXT O N N 388 LEU H H N N 389 LEU H2 H N N 390 LEU HA H N N 391 LEU HB2 H N N 392 LEU HB3 H N N 393 LEU HG H N N 394 LEU HD11 H N N 395 LEU HD12 H N N 396 LEU HD13 H N N 397 LEU HD21 H N N 398 LEU HD22 H N N 399 LEU HD23 H N N 400 LEU HXT H N N 401 LYS N N N N 402 LYS CA C N S 403 LYS C C N N 404 LYS O O N N 405 LYS CB C N N 406 LYS CG C N N 407 LYS CD C N N 408 LYS CE C N N 409 LYS NZ N N N 410 LYS OXT O N N 411 LYS H H N N 412 LYS H2 H N N 413 LYS HA H N N 414 LYS HB2 H N N 415 LYS HB3 H N N 416 LYS HG2 H N N 417 LYS HG3 H N N 418 LYS HD2 H N N 419 LYS HD3 H N N 420 LYS HE2 H N N 421 LYS HE3 H N N 422 LYS HZ1 H N N 423 LYS HZ2 H N N 424 LYS HZ3 H N N 425 LYS HXT H N N 426 PHE N N N N 427 PHE CA C N S 428 PHE C C N N 429 PHE O O N N 430 PHE CB C N N 431 PHE CG C Y N 432 PHE CD1 C Y N 433 PHE CD2 C Y N 434 PHE CE1 C Y N 435 PHE CE2 C Y N 436 PHE CZ C Y N 437 PHE OXT O N N 438 PHE H H N N 439 PHE H2 H N N 440 PHE HA H N N 441 PHE HB2 H N N 442 PHE HB3 H N N 443 PHE HD1 H N N 444 PHE HD2 H N N 445 PHE HE1 H N N 446 PHE HE2 H N N 447 PHE HZ H N N 448 PHE HXT H N N 449 PRO N N N N 450 PRO CA C N S 451 PRO C C N N 452 PRO O O N N 453 PRO CB C N N 454 PRO CG C N N 455 PRO CD C N N 456 PRO OXT O N N 457 PRO H H N N 458 PRO HA H N N 459 PRO HB2 H N N 460 PRO HB3 H N N 461 PRO HG2 H N N 462 PRO HG3 H N N 463 PRO HD2 H N N 464 PRO HD3 H N N 465 PRO HXT H N N 466 SER N N N N 467 SER CA C N S 468 SER C C N N 469 SER O O N N 470 SER CB C N N 471 SER OG O N N 472 SER OXT O N N 473 SER H H N N 474 SER H2 H N N 475 SER HA H N N 476 SER HB2 H N N 477 SER HB3 H N N 478 SER HG H N N 479 SER HXT H N N 480 THR N N N N 481 THR CA C N S 482 THR C C N N 483 THR O O N N 484 THR CB C N R 485 THR OG1 O N N 486 THR CG2 C N N 487 THR OXT O N N 488 THR H H N N 489 THR H2 H N N 490 THR HA H N N 491 THR HB H N N 492 THR HG1 H N N 493 THR HG21 H N N 494 THR HG22 H N N 495 THR HG23 H N N 496 THR HXT H N N 497 TRP N N N N 498 TRP CA C N S 499 TRP C C N N 500 TRP O O N N 501 TRP CB C N N 502 TRP CG C Y N 503 TRP CD1 C Y N 504 TRP CD2 C Y N 505 TRP NE1 N Y N 506 TRP CE2 C Y N 507 TRP CE3 C Y N 508 TRP CZ2 C Y N 509 TRP CZ3 C Y N 510 TRP CH2 C Y N 511 TRP OXT O N N 512 TRP H H N N 513 TRP H2 H N N 514 TRP HA H N N 515 TRP HB2 H N N 516 TRP HB3 H N N 517 TRP HD1 H N N 518 TRP HE1 H N N 519 TRP HE3 H N N 520 TRP HZ2 H N N 521 TRP HZ3 H N N 522 TRP HH2 H N N 523 TRP HXT H N N 524 TYR N N N N 525 TYR CA C N S 526 TYR C C N N 527 TYR O O N N 528 TYR CB C N N 529 TYR CG C Y N 530 TYR CD1 C Y N 531 TYR CD2 C Y N 532 TYR CE1 C Y N 533 TYR CE2 C Y N 534 TYR CZ C Y N 535 TYR OH O N N 536 TYR OXT O N N 537 TYR H H N N 538 TYR H2 H N N 539 TYR HA H N N 540 TYR HB2 H N N 541 TYR HB3 H N N 542 TYR HD1 H N N 543 TYR HD2 H N N 544 TYR HE1 H N N 545 TYR HE2 H N N 546 TYR HH H N N 547 TYR HXT H N N 548 VAL N N N N 549 VAL CA C N S 550 VAL C C N N 551 VAL O O N N 552 VAL CB C N N 553 VAL CG1 C N N 554 VAL CG2 C N N 555 VAL OXT O N N 556 VAL H H N N 557 VAL H2 H N N 558 VAL HA H N N 559 VAL HB H N N 560 VAL HG11 H N N 561 VAL HG12 H N N 562 VAL HG13 H N N 563 VAL HG21 H N N 564 VAL HG22 H N N 565 VAL HG23 H N N 566 VAL HXT H N N 567 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ACT C O doub N N 39 ACT C OXT sing N N 40 ACT C CH3 sing N N 41 ACT CH3 H1 sing N N 42 ACT CH3 H2 sing N N 43 ACT CH3 H3 sing N N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 DA OP3 P sing N N 127 DA OP3 HOP3 sing N N 128 DA P OP1 doub N N 129 DA P OP2 sing N N 130 DA P "O5'" sing N N 131 DA OP2 HOP2 sing N N 132 DA "O5'" "C5'" sing N N 133 DA "C5'" "C4'" sing N N 134 DA "C5'" "H5'" sing N N 135 DA "C5'" "H5''" sing N N 136 DA "C4'" "O4'" sing N N 137 DA "C4'" "C3'" sing N N 138 DA "C4'" "H4'" sing N N 139 DA "O4'" "C1'" sing N N 140 DA "C3'" "O3'" sing N N 141 DA "C3'" "C2'" sing N N 142 DA "C3'" "H3'" sing N N 143 DA "O3'" "HO3'" sing N N 144 DA "C2'" "C1'" sing N N 145 DA "C2'" "H2'" sing N N 146 DA "C2'" "H2''" sing N N 147 DA "C1'" N9 sing N N 148 DA "C1'" "H1'" sing N N 149 DA N9 C8 sing Y N 150 DA N9 C4 sing Y N 151 DA C8 N7 doub Y N 152 DA C8 H8 sing N N 153 DA N7 C5 sing Y N 154 DA C5 C6 sing Y N 155 DA C5 C4 doub Y N 156 DA C6 N6 sing N N 157 DA C6 N1 doub Y N 158 DA N6 H61 sing N N 159 DA N6 H62 sing N N 160 DA N1 C2 sing Y N 161 DA C2 N3 doub Y N 162 DA C2 H2 sing N N 163 DA N3 C4 sing Y N 164 DC OP3 P sing N N 165 DC OP3 HOP3 sing N N 166 DC P OP1 doub N N 167 DC P OP2 sing N N 168 DC P "O5'" sing N N 169 DC OP2 HOP2 sing N N 170 DC "O5'" "C5'" sing N N 171 DC "C5'" "C4'" sing N N 172 DC "C5'" "H5'" sing N N 173 DC "C5'" "H5''" sing N N 174 DC "C4'" "O4'" sing N N 175 DC "C4'" "C3'" sing N N 176 DC "C4'" "H4'" sing N N 177 DC "O4'" "C1'" sing N N 178 DC "C3'" "O3'" sing N N 179 DC "C3'" "C2'" sing N N 180 DC "C3'" "H3'" sing N N 181 DC "O3'" "HO3'" sing N N 182 DC "C2'" "C1'" sing N N 183 DC "C2'" "H2'" sing N N 184 DC "C2'" "H2''" sing N N 185 DC "C1'" N1 sing N N 186 DC "C1'" "H1'" sing N N 187 DC N1 C2 sing N N 188 DC N1 C6 sing N N 189 DC C2 O2 doub N N 190 DC C2 N3 sing N N 191 DC N3 C4 doub N N 192 DC C4 N4 sing N N 193 DC C4 C5 sing N N 194 DC N4 H41 sing N N 195 DC N4 H42 sing N N 196 DC C5 C6 doub N N 197 DC C5 H5 sing N N 198 DC C6 H6 sing N N 199 DG OP3 P sing N N 200 DG OP3 HOP3 sing N N 201 DG P OP1 doub N N 202 DG P OP2 sing N N 203 DG P "O5'" sing N N 204 DG OP2 HOP2 sing N N 205 DG "O5'" "C5'" sing N N 206 DG "C5'" "C4'" sing N N 207 DG "C5'" "H5'" sing N N 208 DG "C5'" "H5''" sing N N 209 DG "C4'" "O4'" sing N N 210 DG "C4'" "C3'" sing N N 211 DG "C4'" "H4'" sing N N 212 DG "O4'" "C1'" sing N N 213 DG "C3'" "O3'" sing N N 214 DG "C3'" "C2'" sing N N 215 DG "C3'" "H3'" sing N N 216 DG "O3'" "HO3'" sing N N 217 DG "C2'" "C1'" sing N N 218 DG "C2'" "H2'" sing N N 219 DG "C2'" "H2''" sing N N 220 DG "C1'" N9 sing N N 221 DG "C1'" "H1'" sing N N 222 DG N9 C8 sing Y N 223 DG N9 C4 sing Y N 224 DG C8 N7 doub Y N 225 DG C8 H8 sing N N 226 DG N7 C5 sing Y N 227 DG C5 C6 sing N N 228 DG C5 C4 doub Y N 229 DG C6 O6 doub N N 230 DG C6 N1 sing N N 231 DG N1 C2 sing N N 232 DG N1 H1 sing N N 233 DG C2 N2 sing N N 234 DG C2 N3 doub N N 235 DG N2 H21 sing N N 236 DG N2 H22 sing N N 237 DG N3 C4 sing N N 238 DT OP3 P sing N N 239 DT OP3 HOP3 sing N N 240 DT P OP1 doub N N 241 DT P OP2 sing N N 242 DT P "O5'" sing N N 243 DT OP2 HOP2 sing N N 244 DT "O5'" "C5'" sing N N 245 DT "C5'" "C4'" sing N N 246 DT "C5'" "H5'" sing N N 247 DT "C5'" "H5''" sing N N 248 DT "C4'" "O4'" sing N N 249 DT "C4'" "C3'" sing N N 250 DT "C4'" "H4'" sing N N 251 DT "O4'" "C1'" sing N N 252 DT "C3'" "O3'" sing N N 253 DT "C3'" "C2'" sing N N 254 DT "C3'" "H3'" sing N N 255 DT "O3'" "HO3'" sing N N 256 DT "C2'" "C1'" sing N N 257 DT "C2'" "H2'" sing N N 258 DT "C2'" "H2''" sing N N 259 DT "C1'" N1 sing N N 260 DT "C1'" "H1'" sing N N 261 DT N1 C2 sing N N 262 DT N1 C6 sing N N 263 DT C2 O2 doub N N 264 DT C2 N3 sing N N 265 DT N3 C4 sing N N 266 DT N3 H3 sing N N 267 DT C4 O4 doub N N 268 DT C4 C5 sing N N 269 DT C5 C7 sing N N 270 DT C5 C6 doub N N 271 DT C7 H71 sing N N 272 DT C7 H72 sing N N 273 DT C7 H73 sing N N 274 DT C6 H6 sing N N 275 EDO C1 O1 sing N N 276 EDO C1 C2 sing N N 277 EDO C1 H11 sing N N 278 EDO C1 H12 sing N N 279 EDO O1 HO1 sing N N 280 EDO C2 O2 sing N N 281 EDO C2 H21 sing N N 282 EDO C2 H22 sing N N 283 EDO O2 HO2 sing N N 284 GLN N CA sing N N 285 GLN N H sing N N 286 GLN N H2 sing N N 287 GLN CA C sing N N 288 GLN CA CB sing N N 289 GLN CA HA sing N N 290 GLN C O doub N N 291 GLN C OXT sing N N 292 GLN CB CG sing N N 293 GLN CB HB2 sing N N 294 GLN CB HB3 sing N N 295 GLN CG CD sing N N 296 GLN CG HG2 sing N N 297 GLN CG HG3 sing N N 298 GLN CD OE1 doub N N 299 GLN CD NE2 sing N N 300 GLN NE2 HE21 sing N N 301 GLN NE2 HE22 sing N N 302 GLN OXT HXT sing N N 303 GLU N CA sing N N 304 GLU N H sing N N 305 GLU N H2 sing N N 306 GLU CA C sing N N 307 GLU CA CB sing N N 308 GLU CA HA sing N N 309 GLU C O doub N N 310 GLU C OXT sing N N 311 GLU CB CG sing N N 312 GLU CB HB2 sing N N 313 GLU CB HB3 sing N N 314 GLU CG CD sing N N 315 GLU CG HG2 sing N N 316 GLU CG HG3 sing N N 317 GLU CD OE1 doub N N 318 GLU CD OE2 sing N N 319 GLU OE2 HE2 sing N N 320 GLU OXT HXT sing N N 321 GLY N CA sing N N 322 GLY N H sing N N 323 GLY N H2 sing N N 324 GLY CA C sing N N 325 GLY CA HA2 sing N N 326 GLY CA HA3 sing N N 327 GLY C O doub N N 328 GLY C OXT sing N N 329 GLY OXT HXT sing N N 330 HIS N CA sing N N 331 HIS N H sing N N 332 HIS N H2 sing N N 333 HIS CA C sing N N 334 HIS CA CB sing N N 335 HIS CA HA sing N N 336 HIS C O doub N N 337 HIS C OXT sing N N 338 HIS CB CG sing N N 339 HIS CB HB2 sing N N 340 HIS CB HB3 sing N N 341 HIS CG ND1 sing Y N 342 HIS CG CD2 doub Y N 343 HIS ND1 CE1 doub Y N 344 HIS ND1 HD1 sing N N 345 HIS CD2 NE2 sing Y N 346 HIS CD2 HD2 sing N N 347 HIS CE1 NE2 sing Y N 348 HIS CE1 HE1 sing N N 349 HIS NE2 HE2 sing N N 350 HIS OXT HXT sing N N 351 HOH O H1 sing N N 352 HOH O H2 sing N N 353 ILE N CA sing N N 354 ILE N H sing N N 355 ILE N H2 sing N N 356 ILE CA C sing N N 357 ILE CA CB sing N N 358 ILE CA HA sing N N 359 ILE C O doub N N 360 ILE C OXT sing N N 361 ILE CB CG1 sing N N 362 ILE CB CG2 sing N N 363 ILE CB HB sing N N 364 ILE CG1 CD1 sing N N 365 ILE CG1 HG12 sing N N 366 ILE CG1 HG13 sing N N 367 ILE CG2 HG21 sing N N 368 ILE CG2 HG22 sing N N 369 ILE CG2 HG23 sing N N 370 ILE CD1 HD11 sing N N 371 ILE CD1 HD12 sing N N 372 ILE CD1 HD13 sing N N 373 ILE OXT HXT sing N N 374 LEU N CA sing N N 375 LEU N H sing N N 376 LEU N H2 sing N N 377 LEU CA C sing N N 378 LEU CA CB sing N N 379 LEU CA HA sing N N 380 LEU C O doub N N 381 LEU C OXT sing N N 382 LEU CB CG sing N N 383 LEU CB HB2 sing N N 384 LEU CB HB3 sing N N 385 LEU CG CD1 sing N N 386 LEU CG CD2 sing N N 387 LEU CG HG sing N N 388 LEU CD1 HD11 sing N N 389 LEU CD1 HD12 sing N N 390 LEU CD1 HD13 sing N N 391 LEU CD2 HD21 sing N N 392 LEU CD2 HD22 sing N N 393 LEU CD2 HD23 sing N N 394 LEU OXT HXT sing N N 395 LYS N CA sing N N 396 LYS N H sing N N 397 LYS N H2 sing N N 398 LYS CA C sing N N 399 LYS CA CB sing N N 400 LYS CA HA sing N N 401 LYS C O doub N N 402 LYS C OXT sing N N 403 LYS CB CG sing N N 404 LYS CB HB2 sing N N 405 LYS CB HB3 sing N N 406 LYS CG CD sing N N 407 LYS CG HG2 sing N N 408 LYS CG HG3 sing N N 409 LYS CD CE sing N N 410 LYS CD HD2 sing N N 411 LYS CD HD3 sing N N 412 LYS CE NZ sing N N 413 LYS CE HE2 sing N N 414 LYS CE HE3 sing N N 415 LYS NZ HZ1 sing N N 416 LYS NZ HZ2 sing N N 417 LYS NZ HZ3 sing N N 418 LYS OXT HXT sing N N 419 PHE N CA sing N N 420 PHE N H sing N N 421 PHE N H2 sing N N 422 PHE CA C sing N N 423 PHE CA CB sing N N 424 PHE CA HA sing N N 425 PHE C O doub N N 426 PHE C OXT sing N N 427 PHE CB CG sing N N 428 PHE CB HB2 sing N N 429 PHE CB HB3 sing N N 430 PHE CG CD1 doub Y N 431 PHE CG CD2 sing Y N 432 PHE CD1 CE1 sing Y N 433 PHE CD1 HD1 sing N N 434 PHE CD2 CE2 doub Y N 435 PHE CD2 HD2 sing N N 436 PHE CE1 CZ doub Y N 437 PHE CE1 HE1 sing N N 438 PHE CE2 CZ sing Y N 439 PHE CE2 HE2 sing N N 440 PHE CZ HZ sing N N 441 PHE OXT HXT sing N N 442 PRO N CA sing N N 443 PRO N CD sing N N 444 PRO N H sing N N 445 PRO CA C sing N N 446 PRO CA CB sing N N 447 PRO CA HA sing N N 448 PRO C O doub N N 449 PRO C OXT sing N N 450 PRO CB CG sing N N 451 PRO CB HB2 sing N N 452 PRO CB HB3 sing N N 453 PRO CG CD sing N N 454 PRO CG HG2 sing N N 455 PRO CG HG3 sing N N 456 PRO CD HD2 sing N N 457 PRO CD HD3 sing N N 458 PRO OXT HXT sing N N 459 SER N CA sing N N 460 SER N H sing N N 461 SER N H2 sing N N 462 SER CA C sing N N 463 SER CA CB sing N N 464 SER CA HA sing N N 465 SER C O doub N N 466 SER C OXT sing N N 467 SER CB OG sing N N 468 SER CB HB2 sing N N 469 SER CB HB3 sing N N 470 SER OG HG sing N N 471 SER OXT HXT sing N N 472 THR N CA sing N N 473 THR N H sing N N 474 THR N H2 sing N N 475 THR CA C sing N N 476 THR CA CB sing N N 477 THR CA HA sing N N 478 THR C O doub N N 479 THR C OXT sing N N 480 THR CB OG1 sing N N 481 THR CB CG2 sing N N 482 THR CB HB sing N N 483 THR OG1 HG1 sing N N 484 THR CG2 HG21 sing N N 485 THR CG2 HG22 sing N N 486 THR CG2 HG23 sing N N 487 THR OXT HXT sing N N 488 TRP N CA sing N N 489 TRP N H sing N N 490 TRP N H2 sing N N 491 TRP CA C sing N N 492 TRP CA CB sing N N 493 TRP CA HA sing N N 494 TRP C O doub N N 495 TRP C OXT sing N N 496 TRP CB CG sing N N 497 TRP CB HB2 sing N N 498 TRP CB HB3 sing N N 499 TRP CG CD1 doub Y N 500 TRP CG CD2 sing Y N 501 TRP CD1 NE1 sing Y N 502 TRP CD1 HD1 sing N N 503 TRP CD2 CE2 doub Y N 504 TRP CD2 CE3 sing Y N 505 TRP NE1 CE2 sing Y N 506 TRP NE1 HE1 sing N N 507 TRP CE2 CZ2 sing Y N 508 TRP CE3 CZ3 doub Y N 509 TRP CE3 HE3 sing N N 510 TRP CZ2 CH2 doub Y N 511 TRP CZ2 HZ2 sing N N 512 TRP CZ3 CH2 sing Y N 513 TRP CZ3 HZ3 sing N N 514 TRP CH2 HH2 sing N N 515 TRP OXT HXT sing N N 516 TYR N CA sing N N 517 TYR N H sing N N 518 TYR N H2 sing N N 519 TYR CA C sing N N 520 TYR CA CB sing N N 521 TYR CA HA sing N N 522 TYR C O doub N N 523 TYR C OXT sing N N 524 TYR CB CG sing N N 525 TYR CB HB2 sing N N 526 TYR CB HB3 sing N N 527 TYR CG CD1 doub Y N 528 TYR CG CD2 sing Y N 529 TYR CD1 CE1 sing Y N 530 TYR CD1 HD1 sing N N 531 TYR CD2 CE2 doub Y N 532 TYR CD2 HD2 sing N N 533 TYR CE1 CZ doub Y N 534 TYR CE1 HE1 sing N N 535 TYR CE2 CZ sing Y N 536 TYR CE2 HE2 sing N N 537 TYR CZ OH sing N N 538 TYR OH HH sing N N 539 TYR OXT HXT sing N N 540 VAL N CA sing N N 541 VAL N H sing N N 542 VAL N H2 sing N N 543 VAL CA C sing N N 544 VAL CA CB sing N N 545 VAL CA HA sing N N 546 VAL C O doub N N 547 VAL C OXT sing N N 548 VAL CB CG1 sing N N 549 VAL CB CG2 sing N N 550 VAL CB HB sing N N 551 VAL CG1 HG11 sing N N 552 VAL CG1 HG12 sing N N 553 VAL CG1 HG13 sing N N 554 VAL CG2 HG21 sing N N 555 VAL CG2 HG22 sing N N 556 VAL CG2 HG23 sing N N 557 VAL OXT HXT sing N N 558 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VXX 'double helix' 3VXX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 13 1_555 -0.204 -0.026 -0.021 -24.289 -16.683 0.991 1 B_DG1:DC13_C B 1 ? C 13 ? 19 1 1 B DT 2 1_555 C DA 12 1_555 -0.215 0.001 0.085 -11.881 -9.124 -3.086 2 B_DT2:DA12_C B 2 ? C 12 ? 20 1 1 B DC 3 1_555 C DG 11 1_555 0.105 -0.026 -0.223 -2.031 -7.799 1.764 3 B_DC3:DG11_C B 3 ? C 11 ? 19 1 1 B DA 4 1_555 C DT 10 1_555 0.169 -0.049 0.075 2.582 -10.531 2.068 4 B_DA4:DT10_C B 4 ? C 10 ? 20 1 1 B DC 5 1_555 C DG 9 1_555 0.554 -0.167 -0.115 7.609 -16.011 2.624 5 B_DC5:DG9_C B 5 ? C 9 ? 19 1 1 B DT 6 1_555 C DA 8 1_555 -0.085 -0.166 0.022 -3.137 -11.306 -0.206 6 B_DT6:DA8_C B 6 ? C 8 ? 20 1 1 B DA 7 1_555 C DT 7 1_555 -0.121 -0.107 -0.078 -9.830 -10.211 1.235 7 B_DA7:DT7_C B 7 ? C 7 ? 20 1 1 B DC 8 1_555 C DG 6 1_555 0.402 -0.124 0.367 -3.913 -7.029 -2.251 8 B_DC8:DG6_C B 8 ? C 6 ? 19 1 1 B 5CM 9 1_555 C DG 5 1_555 0.524 -0.173 -0.166 4.408 -7.874 -0.814 9 B_5CM9:DG5_C B 9 ? C 5 ? 19 1 1 B DG 10 1_555 C 5CM 4 1_555 -0.469 -0.195 0.034 3.276 6.643 -5.182 10 B_DG10:5CM4_C B 10 ? C 4 ? 19 1 1 B DG 11 1_555 C DC 3 1_555 -0.334 0.014 0.179 19.190 -3.020 2.071 11 B_DG11:DC3_C B 11 ? C 3 ? 19 1 1 B DA 12 1_555 C DT 2 1_555 -0.042 -0.147 0.144 19.492 -21.036 3.697 12 B_DA12:DT2_C B 12 ? C 2 ? 20 1 1 B DC 13 1_555 C DG 1 1_555 0.351 -0.031 -0.099 13.527 -14.973 0.915 13 B_DC13:DG1_C B 13 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 13 1_555 B DT 2 1_555 C DA 12 1_555 -0.911 -0.730 2.965 -0.598 4.822 31.574 -2.107 1.558 2.841 8.796 1.091 31.937 1 BB_DG1DT2:DA12DC13_CC B 1 ? C 13 ? B 2 ? C 12 ? 1 B DT 2 1_555 C DA 12 1_555 B DC 3 1_555 C DG 11 1_555 0.705 0.039 3.007 3.735 1.604 37.878 -0.129 -0.640 3.060 2.463 -5.733 38.087 2 BB_DT2DC3:DG11DA12_CC B 2 ? C 12 ? B 3 ? C 11 ? 1 B DC 3 1_555 C DG 11 1_555 B DA 4 1_555 C DT 10 1_555 0.055 0.098 3.255 -1.324 12.235 28.268 -2.217 -0.363 3.031 23.683 2.564 30.781 3 BB_DC3DA4:DT10DG11_CC B 3 ? C 11 ? B 4 ? C 10 ? 1 B DA 4 1_555 C DT 10 1_555 B DC 5 1_555 C DG 9 1_555 0.696 -0.694 3.131 2.241 1.367 33.499 -1.415 -0.851 3.139 2.367 -3.880 33.599 4 BB_DA4DC5:DG9DT10_CC B 4 ? C 10 ? B 5 ? C 9 ? 1 B DC 5 1_555 C DG 9 1_555 B DT 6 1_555 C DA 8 1_555 -0.040 -0.616 3.508 3.129 8.270 31.389 -2.611 0.643 3.227 14.919 -5.644 32.580 5 BB_DC5DT6:DA8DG9_CC B 5 ? C 9 ? B 6 ? C 8 ? 1 B DT 6 1_555 C DA 8 1_555 B DA 7 1_555 C DT 7 1_555 0.196 -0.288 3.503 1.923 7.352 33.169 -1.741 -0.009 3.370 12.672 -3.315 34.005 6 BB_DT6DA7:DT7DA8_CC B 6 ? C 8 ? B 7 ? C 7 ? 1 B DA 7 1_555 C DT 7 1_555 B DC 8 1_555 C DG 6 1_555 -0.563 -0.499 3.251 -2.278 2.280 33.299 -1.241 0.603 3.241 3.967 3.964 33.451 7 BB_DA7DC8:DG6DT7_CC B 7 ? C 7 ? B 8 ? C 6 ? 1 B DC 8 1_555 C DG 6 1_555 B 5CM 9 1_555 C DG 5 1_555 0.923 0.001 3.161 4.938 -0.049 30.949 0.010 -0.788 3.265 -0.091 -9.181 31.331 8 BB_DC85CM9:DG5DG6_CC B 8 ? C 6 ? B 9 ? C 5 ? 1 B 5CM 9 1_555 C DG 5 1_555 B DG 10 1_555 C 5CM 4 1_555 -0.138 -0.190 3.583 -3.169 -4.665 36.122 0.406 -0.262 3.578 -7.467 5.073 36.545 9 BB_5CM9DG10:5CM4DG5_CC B 9 ? C 5 ? B 10 ? C 4 ? 1 B DG 10 1_555 C 5CM 4 1_555 B DG 11 1_555 C DC 3 1_555 0.045 -0.269 3.179 -4.461 3.605 30.464 -1.175 -0.916 3.090 6.785 8.397 30.987 10 BB_DG10DG11:DC35CM4_CC B 10 ? C 4 ? B 11 ? C 3 ? 1 B DG 11 1_555 C DC 3 1_555 B DA 12 1_555 C DT 2 1_555 -0.596 -0.735 3.298 -4.679 3.879 33.316 -1.893 0.263 3.246 6.696 8.077 33.850 11 BB_DG11DA12:DT2DC3_CC B 11 ? C 3 ? B 12 ? C 2 ? 1 B DA 12 1_555 C DT 2 1_555 B DC 13 1_555 C DG 1 1_555 0.279 -1.263 3.509 -1.647 5.708 33.611 -3.094 -0.747 3.240 9.776 2.821 34.117 12 BB_DA12DC13:DG1DT2_CC B 12 ? C 2 ? B 13 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ACETATE ION' ACT 5 1,2-ETHANEDIOL EDO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3VXV _pdbx_initial_refinement_model.details 'PDB ENTRY 3VXV' #