HEADER HYDROLASE/HYDROLASE INHIBITOR 24-SEP-12 3VYF TITLE HUMAN RENIN IN COMPLEX WITH INHIBITOR 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANGIOTENSINOGENASE; COMPND 5 EC: 3.4.23.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS ASPARTYL PROTEASE, RAS, HYPERTENSION, INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.TAKAHASHI,H.HANZAWA REVDAT 3 08-NOV-23 3VYF 1 HETSYN REVDAT 2 29-JUL-20 3VYF 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 19-DEC-12 3VYF 0 JRNL AUTH Y.MORI,Y.OGAWA,A.MOCHIZUKI,Y.NAKAMURA,C.SUGITA,S.MIYAZAKI, JRNL AUTH 2 K.TAMAKI,Y.MATSUI,M.TAKAHASHI,T.NAGAYAMA,Y.NAGAI,S.INOUE, JRNL AUTH 3 T.NISHI JRNL TITL DESIGN AND DISCOVERY OF NEW JRNL TITL 2 (3S,5R)-5-[4-(2-CHLOROPHENYL)-2, JRNL TITL 3 2-DIMETHYL-5-OXOPIPERAZIN-1-YL]PIPERIDINE-3-CARBOXAMIDES AS JRNL TITL 4 POTENT RENIN INHIBITORS JRNL REF BIOORG.MED.CHEM.LETT. V. 22 7677 2012 JRNL REFN ISSN 0960-894X JRNL PMID 23122821 JRNL DOI 10.1016/J.BMCL.2012.09.103 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1684691.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3469 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 381 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 31.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.790 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 33.67 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : UNL.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : UNL.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3VYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.0-4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.502 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3VSW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-12% PEG 3350, 0.6M NACL, 0.1M REMARK 280 CITRATE PH3.0-4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.71350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.71350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.71350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.71350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.71350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.71350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.71350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.71350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.71350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.71350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.71350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.71350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.71350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.71350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.71350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.71350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.71350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.71350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 70.71350 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 353.56750 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 282.85400 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 353.56750 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 282.85400 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -70.71350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 167 REMARK 465 ASN A 168 REMARK 465 SER A 169 REMARK 465 GLN A 170 REMARK 465 SER B 166 REMARK 465 GLU B 167 REMARK 465 ASN B 168 REMARK 465 SER B 169 REMARK 465 GLN B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 16 22.66 48.32 REMARK 500 ASN A 75 -65.11 -152.94 REMARK 500 LYS A 197 148.14 -176.59 REMARK 500 ALA A 299 45.46 -84.58 REMARK 500 ASN B 75 -55.75 -140.61 REMARK 500 PHE B 119 -4.08 -50.57 REMARK 500 ARG B 164 -33.81 -133.65 REMARK 500 LYS B 197 144.36 -178.39 REMARK 500 ARG B 251 -98.32 -65.08 REMARK 500 LEU B 252 -52.75 -120.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VYD RELATED DB: PDB REMARK 900 RELATED ID: 3VYE RELATED DB: PDB DBREF 3VYF A 1 340 UNP P00797 RENI_HUMAN 67 406 DBREF 3VYF B 1 340 UNP P00797 RENI_HUMAN 67 406 SEQRES 1 A 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR SEQRES 2 A 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 A 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR SEQRES 4 A 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER SEQRES 5 A 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP SEQRES 6 A 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU SEQRES 7 A 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE SEQRES 8 A 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL SEQRES 9 A 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU SEQRES 10 A 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET SEQRES 11 A 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE SEQRES 12 A 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP SEQRES 13 A 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER SEQRES 14 A 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP SEQRES 15 A 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU SEQRES 16 A 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SEQRES 17 A 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS SEQRES 18 A 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY SEQRES 19 A 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY SEQRES 20 A 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN SEQRES 21 A 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY SEQRES 22 A 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE SEQRES 23 A 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA SEQRES 24 A 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR SEQRES 25 A 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR SEQRES 26 A 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU SEQRES 27 A 340 ALA ARG SEQRES 1 B 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR SEQRES 2 B 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 B 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR SEQRES 4 B 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER SEQRES 5 B 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP SEQRES 6 B 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU SEQRES 7 B 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE SEQRES 8 B 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL SEQRES 9 B 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU SEQRES 10 B 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET SEQRES 11 B 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE SEQRES 12 B 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP SEQRES 13 B 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER SEQRES 14 B 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP SEQRES 15 B 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU SEQRES 16 B 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SEQRES 17 B 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS SEQRES 18 B 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY SEQRES 19 B 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY SEQRES 20 B 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN SEQRES 21 B 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY SEQRES 22 B 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE SEQRES 23 B 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA SEQRES 24 B 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR SEQRES 25 B 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR SEQRES 26 B 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU SEQRES 27 B 340 ALA ARG MODRES 3VYF ASN B 75 ASN GLYCOSYLATION SITE MODRES 3VYF ASN A 75 ASN GLYCOSYLATION SITE HET NAG A 401 14 HET VYF A 402 68 HET NAG B 401 14 HET VYF B 402 68 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM VYF (3S,5R)-5-[4-(2-CHLOROPHENYL)-2,2-DIMETHYL-5- HETNAM 2 VYF OXOPIPERAZIN-1-YL]-N-(2,6-DIMETHYLHEPTAN-4-YL) HETNAM 3 VYF PIPERIDINE-3-CARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 VYF 2(C27 H43 CL N4 O2) FORMUL 7 HOH *97(H2 O) HELIX 1 1 TYR A 55 TYR A 60 1 6 HELIX 2 2 ASP A 65 SER A 69 5 5 HELIX 3 3 PRO A 115 MET A 120 1 6 HELIX 4 4 PHE A 132 VAL A 140 5 9 HELIX 5 5 PRO A 142 SER A 149 1 8 HELIX 6 6 ASP A 182 GLN A 184 5 3 HELIX 7 7 SER A 235 GLY A 247 1 13 HELIX 8 8 ASN A 260 LEU A 265 5 6 HELIX 9 9 THR A 280 VAL A 285 1 6 HELIX 10 10 GLY A 316 ARG A 321 1 6 HELIX 11 11 TYR B 55 HIS B 61 1 7 HELIX 12 12 ASP B 65 SER B 69 5 5 HELIX 13 13 PRO B 115 MET B 120 1 6 HELIX 14 14 PHE B 132 VAL B 140 5 9 HELIX 15 15 PRO B 142 GLN B 150 1 9 HELIX 16 16 ASP B 182 GLN B 184 5 3 HELIX 17 17 SER B 235 GLY B 247 1 13 HELIX 18 18 ASN B 260 LEU B 265 5 6 HELIX 19 19 THR B 280 VAL B 285 1 6 HELIX 20 20 GLY B 316 ARG B 321 1 6 SHEET 1 A 9 GLU A 78 TYR A 83 0 SHEET 2 A 9 GLY A 86 VAL A 99 -1 O GLY A 90 N LEU A 79 SHEET 3 A 9 GLN A 19 ILE A 26 -1 N GLY A 25 O THR A 98 SHEET 4 A 9 SER A 8 TYR A 15 -1 N THR A 13 O TYR A 21 SHEET 5 A 9 GLY A 174 LEU A 178 -1 O LEU A 178 N SER A 8 SHEET 6 A 9 VAL A 157 TYR A 162 -1 N SER A 159 O VAL A 177 SHEET 7 A 9 PHE A 323 ASP A 328 -1 O PHE A 327 N PHE A 158 SHEET 8 A 9 ARG A 333 ALA A 339 -1 O GLY A 335 N GLU A 326 SHEET 9 A 9 TYR A 186 ASN A 194 -1 N HIS A 191 O PHE A 336 SHEET 1 B13 GLU A 78 TYR A 83 0 SHEET 2 B13 GLY A 86 VAL A 99 -1 O GLY A 90 N LEU A 79 SHEET 3 B13 ILE A 102 GLU A 113 -1 O GLU A 110 N PHE A 91 SHEET 4 B13 VAL A 44 PRO A 47 1 N VAL A 44 O GLY A 109 SHEET 5 B13 GLY A 126 GLY A 129 -1 O VAL A 127 N TRP A 45 SHEET 6 B13 GLN A 31 ASP A 38 1 N VAL A 36 O VAL A 128 SHEET 7 B13 GLN A 19 ILE A 26 -1 N GLY A 22 O VAL A 35 SHEET 8 B13 SER A 8 TYR A 15 -1 N THR A 13 O TYR A 21 SHEET 9 B13 GLY A 174 LEU A 178 -1 O LEU A 178 N SER A 8 SHEET 10 B13 VAL A 157 TYR A 162 -1 N SER A 159 O VAL A 177 SHEET 11 B13 PHE A 323 ASP A 328 -1 O PHE A 327 N PHE A 158 SHEET 12 B13 ARG A 333 ALA A 339 -1 O GLY A 335 N GLU A 326 SHEET 13 B13 TYR A 186 ASN A 194 -1 N HIS A 191 O PHE A 336 SHEET 1 C 3 GLN A 202 MET A 205 0 SHEET 2 C 3 CYS A 221 VAL A 225 -1 O CYS A 221 N MET A 205 SHEET 3 C 3 TRP A 313 LEU A 315 1 O LEU A 315 N LEU A 224 SHEET 1 D 4 THR A 214 LEU A 216 0 SHEET 2 D 4 GLY A 207 VAL A 210 -1 N VAL A 208 O LEU A 216 SHEET 3 D 4 ILE A 268 HIS A 271 -1 O HIS A 271 N GLY A 207 SHEET 4 D 4 GLU A 276 LEU A 279 -1 O LEU A 279 N ILE A 268 SHEET 1 E 2 ILE A 232 GLY A 234 0 SHEET 2 E 2 ILE A 300 ALA A 302 1 O HIS A 301 N ILE A 232 SHEET 1 F 3 LYS A 249 LYS A 250 0 SHEET 2 F 3 TYR A 255 LYS A 258 -1 O VAL A 256 N LYS A 249 SHEET 3 F 3 LEU A 295 THR A 297 -1 O CYS A 296 N VAL A 257 SHEET 1 G 6 SER B 8 ILE B 11 0 SHEET 2 G 6 GLY B 174 LEU B 178 -1 O LEU B 178 N SER B 8 SHEET 3 G 6 VAL B 157 TYR B 162 -1 N SER B 159 O VAL B 177 SHEET 4 G 6 PHE B 323 ASP B 328 -1 O PHE B 327 N PHE B 158 SHEET 5 G 6 ARG B 333 ALA B 339 -1 O GLY B 335 N GLU B 326 SHEET 6 G 6 TYR B 186 ASN B 194 -1 N GLU B 187 O LEU B 338 SHEET 1 H 8 THR B 13 TYR B 15 0 SHEET 2 H 8 GLN B 19 ILE B 26 -1 O GLN B 19 N TYR B 15 SHEET 3 H 8 GLN B 31 ASP B 38 -1 O VAL B 35 N GLY B 22 SHEET 4 H 8 GLY B 126 GLY B 129 1 O VAL B 128 N VAL B 36 SHEET 5 H 8 VAL B 44 PRO B 47 -1 N TRP B 45 O VAL B 127 SHEET 6 H 8 ILE B 102 GLU B 113 1 O GLY B 109 N VAL B 44 SHEET 7 H 8 GLY B 86 VAL B 99 -1 N PHE B 91 O GLU B 110 SHEET 8 H 8 LYS B 73 TYR B 83 -1 N LEU B 79 O GLY B 90 SHEET 1 I 4 THR B 13 TYR B 15 0 SHEET 2 I 4 GLN B 19 ILE B 26 -1 O GLN B 19 N TYR B 15 SHEET 3 I 4 GLY B 86 VAL B 99 -1 O THR B 98 N GLY B 25 SHEET 4 I 4 LYS B 73 TYR B 83 -1 N LEU B 79 O GLY B 90 SHEET 1 J 5 GLN B 202 MET B 205 0 SHEET 2 J 5 CYS B 221 VAL B 225 -1 O CYS B 221 N MET B 205 SHEET 3 J 5 TRP B 313 LEU B 315 1 O TRP B 313 N LEU B 224 SHEET 4 J 5 ILE B 232 GLY B 234 -1 N SER B 233 O ALA B 314 SHEET 5 J 5 ILE B 300 ALA B 302 1 O HIS B 301 N ILE B 232 SHEET 1 K 4 SER B 213 LEU B 216 0 SHEET 2 K 4 VAL B 208 VAL B 210 -1 N VAL B 208 O LEU B 216 SHEET 3 K 4 ILE B 268 LEU B 272 -1 O SER B 269 N SER B 209 SHEET 4 K 4 LYS B 275 LEU B 279 -1 O TYR B 277 N PHE B 270 SHEET 1 L 3 LYS B 249 LYS B 250 0 SHEET 2 L 3 TYR B 255 LYS B 258 -1 O VAL B 256 N LYS B 249 SHEET 3 L 3 LEU B 295 THR B 297 -1 O CYS B 296 N VAL B 257 SSBOND 1 CYS A 51 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 217 CYS A 221 1555 1555 2.04 SSBOND 3 CYS A 259 CYS A 296 1555 1555 2.04 SSBOND 4 CYS B 51 CYS B 58 1555 1555 2.03 SSBOND 5 CYS B 217 CYS B 221 1555 1555 2.04 SSBOND 6 CYS B 259 CYS B 296 1555 1555 2.03 LINK ND2 ASN A 75 C1 NAG A 401 1555 1555 1.46 LINK ND2 ASN B 75 C1 NAG B 401 1555 1555 1.46 CISPEP 1 THR A 28 PRO A 29 0 -0.15 CISPEP 2 LEU A 117 PRO A 118 0 0.28 CISPEP 3 PRO A 307 PRO A 308 0 0.00 CISPEP 4 GLY A 310 PRO A 311 0 0.04 CISPEP 5 THR B 28 PRO B 29 0 -0.05 CISPEP 6 LEU B 117 PRO B 118 0 0.21 CISPEP 7 PRO B 307 PRO B 308 0 -0.04 CISPEP 8 GLY B 310 PRO B 311 0 -0.06 CRYST1 141.427 141.427 141.427 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007071 0.00000