data_3VYJ # _entry.id 3VYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VYJ RCSB RCSB095660 WWPDB D_1000095660 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VYK _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VYJ _pdbx_database_status.recvd_initial_deposition_date 2012-09-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagae, M.' 1 'Yamanaka, K.' 2 'Hanashima, S.' 3 'Ikeda, A.' 4 'Satoh, T.' 5 'Matsumoto, N.' 6 'Yamamoto, K.' 7 'Yamaguchi, Y.' 8 # _citation.id primary _citation.title ;Recognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2 ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 33598 _citation.page_last 33610 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24108122 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.513572 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nagae, M.' 1 primary 'Yamanaka, K.' 2 primary 'Hanashima, S.' 3 primary 'Ikeda, A.' 4 primary 'Morita-Matsumoto, K.' 5 primary 'Satoh, T.' 6 primary 'Matsumoto, N.' 7 primary 'Yamamoto, K.' 8 primary 'Yamaguchi, Y.' 9 # _cell.entry_id 3VYJ _cell.length_a 49.420 _cell.length_b 49.420 _cell.length_c 250.499 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VYJ _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C-type lectin domain family 4, member a4' 14960.639 1 ? ? 'UNP residues 107-233' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dendritic cell immunoreceptor-2, Dendritic cell inhibitory receptor 2, MCG1050915, Protein Clec4a4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSCPKDWKPFVSHCYFILNDSKASWNESEEKCSHMGAHLVVIHSQAEQDFITSNLNTSAGYFIGLLDAGQRQWRWIDQTP YNKSATFWHKGEPNQDWERCVIINHKTTGWGWNDIPCKDEHNSVCQVKK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSCPKDWKPFVSHCYFILNDSKASWNESEEKCSHMGAHLVVIHSQAEQDFITSNLNTSAGYFIGLLDAGQRQWRWIDQTP YNKSATFWHKGEPNQDWERCVIINHKTTGWGWNDIPCKDEHNSVCQVKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 CYS n 1 4 PRO n 1 5 LYS n 1 6 ASP n 1 7 TRP n 1 8 LYS n 1 9 PRO n 1 10 PHE n 1 11 VAL n 1 12 SER n 1 13 HIS n 1 14 CYS n 1 15 TYR n 1 16 PHE n 1 17 ILE n 1 18 LEU n 1 19 ASN n 1 20 ASP n 1 21 SER n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 TRP n 1 26 ASN n 1 27 GLU n 1 28 SER n 1 29 GLU n 1 30 GLU n 1 31 LYS n 1 32 CYS n 1 33 SER n 1 34 HIS n 1 35 MET n 1 36 GLY n 1 37 ALA n 1 38 HIS n 1 39 LEU n 1 40 VAL n 1 41 VAL n 1 42 ILE n 1 43 HIS n 1 44 SER n 1 45 GLN n 1 46 ALA n 1 47 GLU n 1 48 GLN n 1 49 ASP n 1 50 PHE n 1 51 ILE n 1 52 THR n 1 53 SER n 1 54 ASN n 1 55 LEU n 1 56 ASN n 1 57 THR n 1 58 SER n 1 59 ALA n 1 60 GLY n 1 61 TYR n 1 62 PHE n 1 63 ILE n 1 64 GLY n 1 65 LEU n 1 66 LEU n 1 67 ASP n 1 68 ALA n 1 69 GLY n 1 70 GLN n 1 71 ARG n 1 72 GLN n 1 73 TRP n 1 74 ARG n 1 75 TRP n 1 76 ILE n 1 77 ASP n 1 78 GLN n 1 79 THR n 1 80 PRO n 1 81 TYR n 1 82 ASN n 1 83 LYS n 1 84 SER n 1 85 ALA n 1 86 THR n 1 87 PHE n 1 88 TRP n 1 89 HIS n 1 90 LYS n 1 91 GLY n 1 92 GLU n 1 93 PRO n 1 94 ASN n 1 95 GLN n 1 96 ASP n 1 97 TRP n 1 98 GLU n 1 99 ARG n 1 100 CYS n 1 101 VAL n 1 102 ILE n 1 103 ILE n 1 104 ASN n 1 105 HIS n 1 106 LYS n 1 107 THR n 1 108 THR n 1 109 GLY n 1 110 TRP n 1 111 GLY n 1 112 TRP n 1 113 ASN n 1 114 ASP n 1 115 ILE n 1 116 PRO n 1 117 CYS n 1 118 LYS n 1 119 ASP n 1 120 GLU n 1 121 HIS n 1 122 ASN n 1 123 SER n 1 124 VAL n 1 125 CYS n 1 126 GLN n 1 127 VAL n 1 128 LYS n 1 129 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Dcir2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pCold vector' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5YIR8_MOUSE _struct_ref.pdbx_db_accession Q5YIR8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CPKDWKPFVSHCYFILNDSKASWNESEEKCSHMGAHLVVIHSQAEQDFITSNLNTSAGYFIGLLDAGQRQWRWIDQTPYN KSATFWHKGEPNQDWERCVIINHKTTGWGWNDIPCKDEHNSVCQVKK ; _struct_ref.pdbx_align_begin 107 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VYJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5YIR8 _struct_ref_seq.db_align_beg 107 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 233 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 107 _struct_ref_seq.pdbx_auth_seq_align_end 233 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VYJ GLY A 1 ? UNP Q5YIR8 ? ? 'EXPRESSION TAG' 105 1 1 3VYJ SER A 2 ? UNP Q5YIR8 ? ? 'EXPRESSION TAG' 106 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VYJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 58.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(1,1,1) double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 3VYJ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.15 _reflns.number_obs 10806 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 34.2 _reflns.pdbx_redundancy 19.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.19 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.484 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 20.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 503 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VYJ _refine.ls_number_reflns_obs 10218 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.80 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.23709 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23541 _refine.ls_R_factor_R_free 0.27161 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 497 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 34.451 _refine.aniso_B[1][1] 0.68 _refine.aniso_B[2][2] 0.68 _refine.aniso_B[3][3] -1.02 _refine.aniso_B[1][2] 0.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.222 _refine.pdbx_overall_ESU_R_Free 0.194 _refine.overall_SU_ML 0.147 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.699 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1049 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1092 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 42.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.020 ? 1099 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.319 1.890 ? 1497 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.521 5.000 ? 127 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39.295 24.912 ? 57 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.566 15.000 ? 175 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 28.642 15.000 ? 3 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.092 0.200 ? 149 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 848 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.152 _refine_ls_shell.d_res_low 2.208 _refine_ls_shell.number_reflns_R_work 579 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VYJ _struct.title 'Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 (apo form)' _struct.pdbx_descriptor 'C-type lectin domain family 4, member a4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VYJ _struct_keywords.pdbx_keywords 'CARBOHYDRATE BINDING PROTEIN' _struct_keywords.text 'C-type lectin fold, cell surface, CARBOHYDRATE BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? MET A 35 ? SER A 128 MET A 139 1 ? 12 HELX_P HELX_P2 2 SER A 44 ? ASN A 54 ? SER A 148 ASN A 158 1 ? 11 HELX_P HELX_P3 3 ASN A 82 ? THR A 86 ? ASN A 186 THR A 190 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 107 A CYS 118 1_555 ? ? ? ? ? ? ? 2.079 ? disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 125 SG ? ? A CYS 136 A CYS 229 1_555 ? ? ? ? ? ? ? 2.093 ? disulf3 disulf ? ? A CYS 100 SG ? ? ? 1_555 A CYS 117 SG ? ? A CYS 204 A CYS 221 1_555 ? ? ? ? ? ? ? 2.069 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 92 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 196 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 93 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 197 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 8 ? PHE A 10 ? LYS A 112 PHE A 114 A 2 HIS A 13 ? ALA A 23 ? HIS A 117 ALA A 127 A 3 HIS A 121 ? LYS A 128 ? HIS A 225 LYS A 232 A 4 HIS A 38 ? LEU A 39 ? HIS A 142 LEU A 143 B 1 LYS A 8 ? PHE A 10 ? LYS A 112 PHE A 114 B 2 HIS A 13 ? ALA A 23 ? HIS A 117 ALA A 127 B 3 HIS A 121 ? LYS A 128 ? HIS A 225 LYS A 232 B 4 TYR A 61 ? PHE A 62 ? TYR A 165 PHE A 166 B 5 CYS A 100 ? LYS A 106 ? CYS A 204 LYS A 210 B 6 GLY A 109 ? ILE A 115 ? GLY A 213 ILE A 219 C 1 LEU A 65 ? ASP A 67 ? LEU A 169 ASP A 171 C 2 TRP A 73 ? TRP A 75 ? TRP A 177 TRP A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 8 ? N LYS A 112 O TYR A 15 ? O TYR A 119 A 2 3 N LEU A 18 ? N LEU A 122 O SER A 123 ? O SER A 227 A 3 4 O GLN A 126 ? O GLN A 230 N HIS A 38 ? N HIS A 142 B 1 2 N LYS A 8 ? N LYS A 112 O TYR A 15 ? O TYR A 119 B 2 3 N LEU A 18 ? N LEU A 122 O SER A 123 ? O SER A 227 B 3 4 O ASN A 122 ? O ASN A 226 N PHE A 62 ? N PHE A 166 B 4 5 N TYR A 61 ? N TYR A 165 O ILE A 103 ? O ILE A 207 B 5 6 N LYS A 106 ? N LYS A 210 O GLY A 109 ? O GLY A 213 C 1 2 N LEU A 66 ? N LEU A 170 O ARG A 74 ? O ARG A 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1001' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1002' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1003' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 89 ? HIS A 193 . ? 1_555 ? 2 AC1 3 LYS A 90 ? LYS A 194 . ? 1_555 ? 3 AC1 3 THR A 108 ? THR A 212 . ? 1_555 ? 4 AC2 5 LYS A 22 ? LYS A 126 . ? 1_555 ? 5 AC2 5 SER A 58 ? SER A 162 . ? 1_555 ? 6 AC2 5 ALA A 59 ? ALA A 163 . ? 1_555 ? 7 AC2 5 GLY A 60 ? GLY A 164 . ? 1_555 ? 8 AC2 5 HIS A 121 ? HIS A 225 . ? 1_555 ? 9 AC3 5 GLU A 98 ? GLU A 202 . ? 1_555 ? 10 AC3 5 PRO A 116 ? PRO A 220 . ? 1_555 ? 11 AC3 5 CYS A 117 ? CYS A 221 . ? 1_555 ? 12 AC3 5 LYS A 118 ? LYS A 222 . ? 1_555 ? 13 AC3 5 HOH E . ? HOH A 1125 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VYJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VYJ _atom_sites.fract_transf_matrix[1][1] 0.020235 _atom_sites.fract_transf_matrix[1][2] 0.011683 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023365 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003992 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 105 ? ? ? A . n A 1 2 SER 2 106 106 SER SER A . n A 1 3 CYS 3 107 107 CYS CYS A . n A 1 4 PRO 4 108 108 PRO PRO A . n A 1 5 LYS 5 109 109 LYS LYS A . n A 1 6 ASP 6 110 110 ASP ASP A . n A 1 7 TRP 7 111 111 TRP TRP A . n A 1 8 LYS 8 112 112 LYS LYS A . n A 1 9 PRO 9 113 113 PRO PRO A . n A 1 10 PHE 10 114 114 PHE PHE A . n A 1 11 VAL 11 115 115 VAL VAL A . n A 1 12 SER 12 116 116 SER SER A . n A 1 13 HIS 13 117 117 HIS HIS A . n A 1 14 CYS 14 118 118 CYS CYS A . n A 1 15 TYR 15 119 119 TYR TYR A . n A 1 16 PHE 16 120 120 PHE PHE A . n A 1 17 ILE 17 121 121 ILE ILE A . n A 1 18 LEU 18 122 122 LEU LEU A . n A 1 19 ASN 19 123 123 ASN ASN A . n A 1 20 ASP 20 124 124 ASP ASP A . n A 1 21 SER 21 125 125 SER SER A . n A 1 22 LYS 22 126 126 LYS LYS A . n A 1 23 ALA 23 127 127 ALA ALA A . n A 1 24 SER 24 128 128 SER SER A . n A 1 25 TRP 25 129 129 TRP TRP A . n A 1 26 ASN 26 130 130 ASN ASN A . n A 1 27 GLU 27 131 131 GLU GLU A . n A 1 28 SER 28 132 132 SER SER A . n A 1 29 GLU 29 133 133 GLU GLU A . n A 1 30 GLU 30 134 134 GLU GLU A . n A 1 31 LYS 31 135 135 LYS LYS A . n A 1 32 CYS 32 136 136 CYS CYS A . n A 1 33 SER 33 137 137 SER SER A . n A 1 34 HIS 34 138 138 HIS HIS A . n A 1 35 MET 35 139 139 MET MET A . n A 1 36 GLY 36 140 140 GLY GLY A . n A 1 37 ALA 37 141 141 ALA ALA A . n A 1 38 HIS 38 142 142 HIS HIS A . n A 1 39 LEU 39 143 143 LEU LEU A . n A 1 40 VAL 40 144 144 VAL VAL A . n A 1 41 VAL 41 145 145 VAL VAL A . n A 1 42 ILE 42 146 146 ILE ILE A . n A 1 43 HIS 43 147 147 HIS HIS A . n A 1 44 SER 44 148 148 SER SER A . n A 1 45 GLN 45 149 149 GLN GLN A . n A 1 46 ALA 46 150 150 ALA ALA A . n A 1 47 GLU 47 151 151 GLU GLU A . n A 1 48 GLN 48 152 152 GLN GLN A . n A 1 49 ASP 49 153 153 ASP ASP A . n A 1 50 PHE 50 154 154 PHE PHE A . n A 1 51 ILE 51 155 155 ILE ILE A . n A 1 52 THR 52 156 156 THR THR A . n A 1 53 SER 53 157 157 SER SER A . n A 1 54 ASN 54 158 158 ASN ASN A . n A 1 55 LEU 55 159 159 LEU LEU A . n A 1 56 ASN 56 160 160 ASN ASN A . n A 1 57 THR 57 161 161 THR THR A . n A 1 58 SER 58 162 162 SER SER A . n A 1 59 ALA 59 163 163 ALA ALA A . n A 1 60 GLY 60 164 164 GLY GLY A . n A 1 61 TYR 61 165 165 TYR TYR A . n A 1 62 PHE 62 166 166 PHE PHE A . n A 1 63 ILE 63 167 167 ILE ILE A . n A 1 64 GLY 64 168 168 GLY GLY A . n A 1 65 LEU 65 169 169 LEU LEU A . n A 1 66 LEU 66 170 170 LEU LEU A . n A 1 67 ASP 67 171 171 ASP ASP A . n A 1 68 ALA 68 172 172 ALA ALA A . n A 1 69 GLY 69 173 173 GLY GLY A . n A 1 70 GLN 70 174 174 GLN GLN A . n A 1 71 ARG 71 175 175 ARG ARG A . n A 1 72 GLN 72 176 176 GLN GLN A . n A 1 73 TRP 73 177 177 TRP TRP A . n A 1 74 ARG 74 178 178 ARG ARG A . n A 1 75 TRP 75 179 179 TRP TRP A . n A 1 76 ILE 76 180 180 ILE ILE A . n A 1 77 ASP 77 181 181 ASP ASP A . n A 1 78 GLN 78 182 182 GLN GLN A . n A 1 79 THR 79 183 183 THR THR A . n A 1 80 PRO 80 184 184 PRO PRO A . n A 1 81 TYR 81 185 185 TYR TYR A . n A 1 82 ASN 82 186 186 ASN ASN A . n A 1 83 LYS 83 187 187 LYS LYS A . n A 1 84 SER 84 188 188 SER SER A . n A 1 85 ALA 85 189 189 ALA ALA A . n A 1 86 THR 86 190 190 THR THR A . n A 1 87 PHE 87 191 191 PHE PHE A . n A 1 88 TRP 88 192 192 TRP TRP A . n A 1 89 HIS 89 193 193 HIS HIS A . n A 1 90 LYS 90 194 194 LYS LYS A . n A 1 91 GLY 91 195 195 GLY GLY A . n A 1 92 GLU 92 196 196 GLU GLU A . n A 1 93 PRO 93 197 197 PRO PRO A . n A 1 94 ASN 94 198 198 ASN ASN A . n A 1 95 GLN 95 199 199 GLN GLN A . n A 1 96 ASP 96 200 200 ASP ASP A . n A 1 97 TRP 97 201 201 TRP TRP A . n A 1 98 GLU 98 202 202 GLU GLU A . n A 1 99 ARG 99 203 203 ARG ARG A . n A 1 100 CYS 100 204 204 CYS CYS A . n A 1 101 VAL 101 205 205 VAL VAL A . n A 1 102 ILE 102 206 206 ILE ILE A . n A 1 103 ILE 103 207 207 ILE ILE A . n A 1 104 ASN 104 208 208 ASN ASN A . n A 1 105 HIS 105 209 209 HIS HIS A . n A 1 106 LYS 106 210 210 LYS LYS A . n A 1 107 THR 107 211 211 THR THR A . n A 1 108 THR 108 212 212 THR THR A . n A 1 109 GLY 109 213 213 GLY GLY A . n A 1 110 TRP 110 214 214 TRP TRP A . n A 1 111 GLY 111 215 215 GLY GLY A . n A 1 112 TRP 112 216 216 TRP TRP A . n A 1 113 ASN 113 217 217 ASN ASN A . n A 1 114 ASP 114 218 218 ASP ASP A . n A 1 115 ILE 115 219 219 ILE ILE A . n A 1 116 PRO 116 220 220 PRO PRO A . n A 1 117 CYS 117 221 221 CYS CYS A . n A 1 118 LYS 118 222 222 LYS LYS A . n A 1 119 ASP 119 223 223 ASP ASP A . n A 1 120 GLU 120 224 224 GLU GLU A . n A 1 121 HIS 121 225 225 HIS HIS A . n A 1 122 ASN 122 226 226 ASN ASN A . n A 1 123 SER 123 227 227 SER SER A . n A 1 124 VAL 124 228 228 VAL VAL A . n A 1 125 CYS 125 229 229 CYS CYS A . n A 1 126 GLN 126 230 230 GLN GLN A . n A 1 127 VAL 127 231 231 VAL VAL A . n A 1 128 LYS 128 232 232 LYS LYS A . n A 1 129 LYS 129 233 233 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2013-10-16 3 'Structure model' 1 2 2013-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 115 ? ? 50.19 -122.47 2 1 ALA A 141 ? ? -121.93 -169.17 3 1 PRO A 197 ? ? -101.93 48.23 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 105 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1001 1001 SO4 SO4 A . C 2 SO4 1 1002 1002 SO4 SO4 A . D 2 SO4 1 1003 1003 SO4 SO4 A . E 3 HOH 1 1101 1 HOH HOH A . E 3 HOH 2 1102 2 HOH HOH A . E 3 HOH 3 1103 3 HOH HOH A . E 3 HOH 4 1104 4 HOH HOH A . E 3 HOH 5 1105 5 HOH HOH A . E 3 HOH 6 1106 6 HOH HOH A . E 3 HOH 7 1107 7 HOH HOH A . E 3 HOH 8 1108 8 HOH HOH A . E 3 HOH 9 1109 9 HOH HOH A . E 3 HOH 10 1110 10 HOH HOH A . E 3 HOH 11 1111 11 HOH HOH A . E 3 HOH 12 1112 12 HOH HOH A . E 3 HOH 13 1113 13 HOH HOH A . E 3 HOH 14 1114 14 HOH HOH A . E 3 HOH 15 1115 15 HOH HOH A . E 3 HOH 16 1116 16 HOH HOH A . E 3 HOH 17 1117 17 HOH HOH A . E 3 HOH 18 1118 18 HOH HOH A . E 3 HOH 19 1119 19 HOH HOH A . E 3 HOH 20 1120 20 HOH HOH A . E 3 HOH 21 1121 21 HOH HOH A . E 3 HOH 22 1122 22 HOH HOH A . E 3 HOH 23 1123 23 HOH HOH A . E 3 HOH 24 1124 24 HOH HOH A . E 3 HOH 25 1125 25 HOH HOH A . E 3 HOH 26 1126 26 HOH HOH A . E 3 HOH 27 1127 27 HOH HOH A . E 3 HOH 28 1128 28 HOH HOH A . #