HEADER TRANSFERASE 30-SEP-12 3VYO TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS L,D-TRANSPEPTIDASE TITLE 2 LDTMT2 N140 TRUNCATION MUTANT (RESIDEUS 140-408) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPPS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 140-408; COMPND 5 SYNONYM: L,D-TRANSPEPTIDASE; COMPND 6 EC: 2.3.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2518C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS BETA BARREL, YKUD DOMAIN, L,D-TRANSPEPTIDASE, BETA-LACTAM BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.LI,D.F.LI,L.J.BI,D.C.WANG REVDAT 1 19-JUN-13 3VYO 0 JRNL AUTH W.J.LI,D.F.LI,Y.L.HU,X.E.ZHANG,L.J.BI,D.C.WANG JRNL TITL CRYSTAL STRUCTURE OF L,D-TRANSPEPTIDASE LDTMT2 IN COMPLEX JRNL TITL 2 WITH MEROPENEM REVEALS THE MECHANISM OF CARBAPENEM AGAINST JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF CELL RES. V. 23 728 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23588382 JRNL DOI 10.1038/CR.2013.53 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 80435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4047 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 649 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 512 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.94500 REMARK 3 B22 (A**2) : -5.99200 REMARK 3 B33 (A**2) : -3.95300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.31 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.01 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB095665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97889 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : 0.56400 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 30% PEG8000 , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.18500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.49500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.18500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.49500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 140 REMARK 465 LEU A 141 REMARK 465 THR A 142 REMARK 465 PHE A 143 REMARK 465 GLN A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 SER A 147 REMARK 465 GLN B 140 REMARK 465 LEU B 141 REMARK 465 THR B 142 REMARK 465 PHE B 143 REMARK 465 GLN B 144 REMARK 465 THR B 145 REMARK 465 SER B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 150 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 739 O HOH A 739 6665 1.84 REMARK 500 O HOH A 756 O HOH A 756 8566 2.12 REMARK 500 O HOH A 623 O HOH A 623 8566 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 149 -53.57 93.11 REMARK 500 ASN A 227 77.55 -100.18 REMARK 500 ASP A 241 169.57 179.88 REMARK 500 HIS A 347 -47.73 -134.82 REMARK 500 ASN A 405 40.24 -149.44 REMARK 500 PRO B 148 109.47 -41.65 REMARK 500 ALA B 149 -70.24 10.67 REMARK 500 ASP B 180 76.89 -104.89 REMARK 500 ASN B 204 -168.90 -163.53 REMARK 500 ASP B 241 175.51 179.82 REMARK 500 MSE B 280 -162.34 -101.73 REMARK 500 HIS B 347 -48.33 -134.61 REMARK 500 ASN B 405 38.38 -153.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VYN RELATED DB: PDB REMARK 900 RELATED ID: 3VYP RELATED DB: PDB DBREF 3VYO A 140 408 UNP O53223 O53223_MYCTU 140 408 DBREF 3VYO B 140 408 UNP O53223 O53223_MYCTU 140 408 SEQRES 1 A 269 GLN LEU THR PHE GLN THR SER SER PRO ALA HIS LEU THR SEQRES 2 A 269 MSE PRO TYR VAL MSE PRO GLY ASP GLY GLU VAL VAL GLY SEQRES 3 A 269 VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE SEQRES 4 A 269 ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE LYS ILE THR SEQRES 5 A 269 THR ASN PRO PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN SEQRES 6 A 269 ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS SEQRES 7 A 269 PRO GLY THR ALA VAL ASP VAL ALA VAL ASN THR TYR GLY SEQRES 8 A 269 VAL ASP LEU GLY GLU GLY MSE PHE GLY GLU ASP ASN VAL SEQRES 9 A 269 GLN THR HIS PHE THR ILE GLY ASP GLU VAL ILE ALA THR SEQRES 10 A 269 ALA ASP ASP ASN THR LYS ILE LEU THR VAL ARG VAL ASN SEQRES 11 A 269 GLY GLU VAL VAL LYS SER MSE PRO THR SER MSE GLY LYS SEQRES 12 A 269 ASP SER THR PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SEQRES 13 A 269 SER ARG TYR LYS HIS ILE ILE MSE ASP SER SER THR TYR SEQRES 14 A 269 GLY VAL PRO VAL ASN SER PRO ASN GLY TYR ARG THR ASP SEQRES 15 A 269 VAL ASP TRP ALA THR GLN ILE SER TYR SER GLY VAL PHE SEQRES 16 A 269 VAL HIS SER ALA PRO TRP SER VAL GLY ALA GLN GLY HIS SEQRES 17 A 269 THR ASN THR SER HIS GLY CYS LEU ASN VAL SER PRO SER SEQRES 18 A 269 ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP SEQRES 19 A 269 ILE VAL GLU VAL VAL ASN THR VAL GLY GLY THR LEU PRO SEQRES 20 A 269 GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP SEQRES 21 A 269 GLN TRP ARG ALA GLY ASN ALA LYS ALA SEQRES 1 B 269 GLN LEU THR PHE GLN THR SER SER PRO ALA HIS LEU THR SEQRES 2 B 269 MSE PRO TYR VAL MSE PRO GLY ASP GLY GLU VAL VAL GLY SEQRES 3 B 269 VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE SEQRES 4 B 269 ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE LYS ILE THR SEQRES 5 B 269 THR ASN PRO PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN SEQRES 6 B 269 ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS SEQRES 7 B 269 PRO GLY THR ALA VAL ASP VAL ALA VAL ASN THR TYR GLY SEQRES 8 B 269 VAL ASP LEU GLY GLU GLY MSE PHE GLY GLU ASP ASN VAL SEQRES 9 B 269 GLN THR HIS PHE THR ILE GLY ASP GLU VAL ILE ALA THR SEQRES 10 B 269 ALA ASP ASP ASN THR LYS ILE LEU THR VAL ARG VAL ASN SEQRES 11 B 269 GLY GLU VAL VAL LYS SER MSE PRO THR SER MSE GLY LYS SEQRES 12 B 269 ASP SER THR PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SEQRES 13 B 269 SER ARG TYR LYS HIS ILE ILE MSE ASP SER SER THR TYR SEQRES 14 B 269 GLY VAL PRO VAL ASN SER PRO ASN GLY TYR ARG THR ASP SEQRES 15 B 269 VAL ASP TRP ALA THR GLN ILE SER TYR SER GLY VAL PHE SEQRES 16 B 269 VAL HIS SER ALA PRO TRP SER VAL GLY ALA GLN GLY HIS SEQRES 17 B 269 THR ASN THR SER HIS GLY CYS LEU ASN VAL SER PRO SER SEQRES 18 B 269 ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP SEQRES 19 B 269 ILE VAL GLU VAL VAL ASN THR VAL GLY GLY THR LEU PRO SEQRES 20 B 269 GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP SEQRES 21 B 269 GLN TRP ARG ALA GLY ASN ALA LYS ALA MODRES 3VYO MSE A 153 MET SELENOMETHIONINE MODRES 3VYO MSE A 157 MET SELENOMETHIONINE MODRES 3VYO MSE A 237 MET SELENOMETHIONINE MODRES 3VYO MSE A 276 MET SELENOMETHIONINE MODRES 3VYO MSE A 280 MET SELENOMETHIONINE MODRES 3VYO MSE A 303 MET SELENOMETHIONINE MODRES 3VYO MSE B 153 MET SELENOMETHIONINE MODRES 3VYO MSE B 157 MET SELENOMETHIONINE MODRES 3VYO MSE B 237 MET SELENOMETHIONINE MODRES 3VYO MSE B 276 MET SELENOMETHIONINE MODRES 3VYO MSE B 280 MET SELENOMETHIONINE MODRES 3VYO MSE B 303 MET SELENOMETHIONINE HET MSE A 153 8 HET MSE A 157 8 HET MSE A 237 8 HET MSE A 276 8 HET MSE A 280 8 HET MSE A 303 8 HET MSE B 153 8 HET MSE B 157 8 HET MSE B 237 8 HET MSE B 276 8 HET MSE B 280 8 HET MSE B 303 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *512(H2 O) HELIX 1 1 ASP A 180 ALA A 187 1 8 HELIX 2 2 SER A 306 GLY A 309 5 4 HELIX 3 3 PRO A 339 VAL A 342 5 4 HELIX 4 4 SER A 358 VAL A 369 1 12 HELIX 5 5 GLY A 392 ILE A 396 5 5 HELIX 6 6 PRO A 397 GLY A 404 1 8 HELIX 7 7 ASP B 180 ALA B 187 1 8 HELIX 8 8 SER B 306 GLY B 309 5 4 HELIX 9 9 PRO B 339 VAL B 342 5 4 HELIX 10 10 SER B 358 VAL B 369 1 12 HELIX 11 11 GLY B 392 ILE B 396 5 5 HELIX 12 12 PRO B 397 GLY B 404 1 8 SHEET 1 A 2 LEU A 151 THR A 152 0 SHEET 2 A 2 PHE A 238 GLY A 239 1 O PHE A 238 N THR A 152 SHEET 1 B 4 PRO A 154 MSE A 157 0 SHEET 2 B 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 B 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 B 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 C 4 VAL A 163 VAL A 164 0 SHEET 2 C 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 C 4 ALA A 221 VAL A 226 -1 N VAL A 226 O VAL A 243 SHEET 4 C 4 ILE A 188 ASN A 193 -1 N LYS A 189 O ALA A 225 SHEET 1 D 5 GLU A 271 PRO A 277 0 SHEET 2 D 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MSE A 276 SHEET 3 D 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 D 5 ILE A 374 VAL A 378 1 O ILE A 374 N ALA A 255 SHEET 5 D 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 E 4 ARG A 297 ASP A 304 0 SHEET 2 E 4 ARG A 319 GLN A 327 -1 O ALA A 325 N TYR A 298 SHEET 3 E 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 E 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 F 2 LEU B 151 THR B 152 0 SHEET 2 F 2 PHE B 238 GLY B 239 1 O PHE B 238 N THR B 152 SHEET 1 G 4 PRO B 154 MSE B 157 0 SHEET 2 G 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 G 4 GLU B 207 PRO B 212 -1 O TRP B 210 N VAL B 170 SHEET 4 G 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 H 4 VAL B 163 VAL B 164 0 SHEET 2 H 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 H 4 ALA B 221 VAL B 226 -1 N VAL B 224 O THR B 245 SHEET 4 H 4 ILE B 188 ASN B 193 -1 N LYS B 189 O ALA B 225 SHEET 1 I 5 GLU B 271 PRO B 277 0 SHEET 2 I 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MSE B 276 SHEET 3 I 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 I 5 ILE B 374 VAL B 378 1 O ILE B 374 N ALA B 255 SHEET 5 I 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 J 4 ARG B 297 ASP B 304 0 SHEET 2 J 4 ARG B 319 GLN B 327 -1 O ALA B 325 N TYR B 298 SHEET 3 J 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 J 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK C THR A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N PRO A 154 1555 1555 1.34 LINK C VAL A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N PRO A 158 1555 1555 1.34 LINK C GLY A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N PHE A 238 1555 1555 1.33 LINK C SER A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N PRO A 277 1555 1555 1.34 LINK C SER A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N GLY A 281 1555 1555 1.33 LINK C ILE A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N ASP A 304 1555 1555 1.33 LINK C THR B 152 N MSE B 153 1555 1555 1.33 LINK C MSE B 153 N PRO B 154 1555 1555 1.34 LINK C VAL B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N PRO B 158 1555 1555 1.34 LINK C GLY B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N PHE B 238 1555 1555 1.33 LINK C SER B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N PRO B 277 1555 1555 1.34 LINK C SER B 279 N MSE B 280 1555 1555 1.33 LINK C MSE B 280 N GLY B 281 1555 1555 1.33 LINK C ILE B 302 N MSE B 303 1555 1555 1.33 LINK C MSE B 303 N ASP B 304 1555 1555 1.33 CISPEP 1 MSE A 157 PRO A 158 0 0.11 CISPEP 2 ASN A 193 PRO A 194 0 0.12 CISPEP 3 MSE B 157 PRO B 158 0 -0.10 CISPEP 4 ASN B 193 PRO B 194 0 -0.06 CRYST1 116.370 121.190 122.990 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008131 0.00000