HEADER TRANSFERASE 30-SEP-12 3VYP TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS L,D-TRANSPEPTIDASE TITLE 2 LDTMT2-N140 ADDUCT WITH MEROPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPPS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 140-408; COMPND 5 SYNONYM: L,D-TRANSPEPTIDASE; COMPND 6 EC: 2.3.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2518C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS BETA BARREL, YKUD DOMAIN, L, D-TRANSPEPTIDASE, BETA-LACTAM BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.LI,D.F.LI,L.J.BI,D.C.WANG REVDAT 2 08-NOV-23 3VYP 1 REMARK LINK REVDAT 1 19-JUN-13 3VYP 0 JRNL AUTH W.J.LI,D.F.LI,Y.L.HU,X.E.ZHANG,L.J.BI,D.C.WANG JRNL TITL CRYSTAL STRUCTURE OF L,D-TRANSPEPTIDASE LDTMT2 IN COMPLEX JRNL TITL 2 WITH MEROPENEM REVEALS THE MECHANISM OF CARBAPENEM AGAINST JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF CELL RES. V. 23 728 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23588382 JRNL DOI 10.1038/CR.2013.53 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 101346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 5120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8761 - 4.3470 0.97 3367 164 0.1731 0.2107 REMARK 3 2 4.3470 - 3.4512 1.00 3319 188 0.1432 0.1704 REMARK 3 3 3.4512 - 3.0152 1.00 3287 177 0.1518 0.1835 REMARK 3 4 3.0152 - 2.7397 1.00 3264 179 0.1672 0.1870 REMARK 3 5 2.7397 - 2.5434 1.00 3262 162 0.1711 0.2060 REMARK 3 6 2.5434 - 2.3934 1.00 3223 186 0.1612 0.1931 REMARK 3 7 2.3934 - 2.2736 1.00 3263 161 0.1580 0.1712 REMARK 3 8 2.2736 - 2.1746 1.00 3232 159 0.1506 0.1778 REMARK 3 9 2.1746 - 2.0909 1.00 3226 186 0.1488 0.1972 REMARK 3 10 2.0909 - 2.0188 1.00 3216 161 0.1521 0.1764 REMARK 3 11 2.0188 - 1.9557 1.00 3200 188 0.1557 0.1939 REMARK 3 12 1.9557 - 1.8998 1.00 3237 175 0.1597 0.2041 REMARK 3 13 1.8998 - 1.8498 1.00 3195 183 0.1518 0.1972 REMARK 3 14 1.8498 - 1.8046 1.00 3234 159 0.1608 0.1916 REMARK 3 15 1.8046 - 1.7636 1.00 3202 166 0.1518 0.2152 REMARK 3 16 1.7636 - 1.7261 1.00 3185 156 0.1525 0.2082 REMARK 3 17 1.7261 - 1.6915 1.00 3176 166 0.1546 0.1866 REMARK 3 18 1.6915 - 1.6596 1.00 3227 189 0.1508 0.1990 REMARK 3 19 1.6596 - 1.6300 1.00 3186 171 0.1500 0.1700 REMARK 3 20 1.6300 - 1.6024 1.00 3208 168 0.1529 0.2193 REMARK 3 21 1.6024 - 1.5765 1.00 3182 184 0.1604 0.2205 REMARK 3 22 1.5765 - 1.5523 1.00 3203 168 0.1668 0.2430 REMARK 3 23 1.5523 - 1.5294 1.00 3144 175 0.1815 0.2331 REMARK 3 24 1.5294 - 1.5079 1.00 3178 180 0.1891 0.2375 REMARK 3 25 1.5079 - 1.4875 1.00 3224 162 0.2073 0.2678 REMARK 3 26 1.4875 - 1.4682 1.00 3176 163 0.2173 0.2637 REMARK 3 27 1.4682 - 1.4498 1.00 3213 162 0.2298 0.2613 REMARK 3 28 1.4498 - 1.4324 0.99 3162 157 0.2505 0.2733 REMARK 3 29 1.4324 - 1.4157 0.98 3133 182 0.2815 0.3133 REMARK 3 30 1.4157 - 1.3998 0.91 2902 143 0.2966 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 84.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.50000 REMARK 3 B22 (A**2) : -5.24660 REMARK 3 B33 (A**2) : -0.25350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4396 REMARK 3 ANGLE : 0.972 6052 REMARK 3 CHIRALITY : 0.066 672 REMARK 3 PLANARITY : 0.004 788 REMARK 3 DIHEDRAL : 10.339 1548 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : 0.53500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VYO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS, REMARK 280 25% PEG3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 140 REMARK 465 GLN B 140 REMARK 465 LEU B 141 REMARK 465 ALA B 406 REMARK 465 LYS B 407 REMARK 465 ALA B 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 -169.14 -169.72 REMARK 500 ASN A 227 56.75 -96.61 REMARK 500 MET A 280 -166.66 -104.49 REMARK 500 SER A 314 88.21 -173.76 REMARK 500 PRO A 315 121.74 -24.39 REMARK 500 ASN A 316 -13.16 105.39 REMARK 500 HIS A 347 -54.41 -138.06 REMARK 500 ASN A 405 39.15 -143.50 REMARK 500 MET B 280 -165.15 -103.83 REMARK 500 HIS B 347 -51.79 -133.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MXR A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MXR B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VYN RELATED DB: PDB REMARK 900 RELATED ID: 3VYO RELATED DB: PDB DBREF 3VYP A 140 408 UNP O53223 O53223_MYCTU 140 408 DBREF 3VYP B 140 408 UNP O53223 O53223_MYCTU 140 408 SEQRES 1 A 269 GLN LEU THR PHE GLN THR SER SER PRO ALA HIS LEU THR SEQRES 2 A 269 MET PRO TYR VAL MET PRO GLY ASP GLY GLU VAL VAL GLY SEQRES 3 A 269 VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE SEQRES 4 A 269 ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE LYS ILE THR SEQRES 5 A 269 THR ASN PRO PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN SEQRES 6 A 269 ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS SEQRES 7 A 269 PRO GLY THR ALA VAL ASP VAL ALA VAL ASN THR TYR GLY SEQRES 8 A 269 VAL ASP LEU GLY GLU GLY MET PHE GLY GLU ASP ASN VAL SEQRES 9 A 269 GLN THR HIS PHE THR ILE GLY ASP GLU VAL ILE ALA THR SEQRES 10 A 269 ALA ASP ASP ASN THR LYS ILE LEU THR VAL ARG VAL ASN SEQRES 11 A 269 GLY GLU VAL VAL LYS SER MET PRO THR SER MET GLY LYS SEQRES 12 A 269 ASP SER THR PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SEQRES 13 A 269 SER ARG TYR LYS HIS ILE ILE MET ASP SER SER THR TYR SEQRES 14 A 269 GLY VAL PRO VAL ASN SER PRO ASN GLY TYR ARG THR ASP SEQRES 15 A 269 VAL ASP TRP ALA THR GLN ILE SER TYR SER GLY VAL PHE SEQRES 16 A 269 VAL HIS SER ALA PRO TRP SER VAL GLY ALA GLN GLY HIS SEQRES 17 A 269 THR ASN THR SER HIS GLY CYS LEU ASN VAL SER PRO SER SEQRES 18 A 269 ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP SEQRES 19 A 269 ILE VAL GLU VAL VAL ASN THR VAL GLY GLY THR LEU PRO SEQRES 20 A 269 GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP SEQRES 21 A 269 GLN TRP ARG ALA GLY ASN ALA LYS ALA SEQRES 1 B 269 GLN LEU THR PHE GLN THR SER SER PRO ALA HIS LEU THR SEQRES 2 B 269 MET PRO TYR VAL MET PRO GLY ASP GLY GLU VAL VAL GLY SEQRES 3 B 269 VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE SEQRES 4 B 269 ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE LYS ILE THR SEQRES 5 B 269 THR ASN PRO PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN SEQRES 6 B 269 ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS SEQRES 7 B 269 PRO GLY THR ALA VAL ASP VAL ALA VAL ASN THR TYR GLY SEQRES 8 B 269 VAL ASP LEU GLY GLU GLY MET PHE GLY GLU ASP ASN VAL SEQRES 9 B 269 GLN THR HIS PHE THR ILE GLY ASP GLU VAL ILE ALA THR SEQRES 10 B 269 ALA ASP ASP ASN THR LYS ILE LEU THR VAL ARG VAL ASN SEQRES 11 B 269 GLY GLU VAL VAL LYS SER MET PRO THR SER MET GLY LYS SEQRES 12 B 269 ASP SER THR PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SEQRES 13 B 269 SER ARG TYR LYS HIS ILE ILE MET ASP SER SER THR TYR SEQRES 14 B 269 GLY VAL PRO VAL ASN SER PRO ASN GLY TYR ARG THR ASP SEQRES 15 B 269 VAL ASP TRP ALA THR GLN ILE SER TYR SER GLY VAL PHE SEQRES 16 B 269 VAL HIS SER ALA PRO TRP SER VAL GLY ALA GLN GLY HIS SEQRES 17 B 269 THR ASN THR SER HIS GLY CYS LEU ASN VAL SER PRO SER SEQRES 18 B 269 ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP SEQRES 19 B 269 ILE VAL GLU VAL VAL ASN THR VAL GLY GLY THR LEU PRO SEQRES 20 B 269 GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP SEQRES 21 B 269 GLN TRP ARG ALA GLY ASN ALA LYS ALA HET GOL A 501 6 HET MXR A 502 26 HET GOL B 501 6 HET MXR B 502 26 HETNAM GOL GLYCEROL HETNAM MXR (2S,3R,4S)-4-{[(3S,5R)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN- HETNAM 2 MXR 3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]- HETNAM 3 MXR 3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MXR MEROPENEM BOUND FORM (TAUTOMERISM) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 MXR 2(C17 H27 N3 O5 S) FORMUL 7 HOH *822(H2 O) HELIX 1 1 ASP A 180 ALA A 187 1 8 HELIX 2 2 SER A 306 GLY A 309 5 4 HELIX 3 3 PRO A 339 VAL A 342 5 4 HELIX 4 4 SER A 358 VAL A 369 1 12 HELIX 5 5 GLY A 392 ILE A 396 5 5 HELIX 6 6 PRO A 397 GLY A 404 1 8 HELIX 7 7 ASP B 180 ALA B 187 1 8 HELIX 8 8 SER B 306 GLY B 309 5 4 HELIX 9 9 PRO B 339 VAL B 342 5 4 HELIX 10 10 SER B 358 VAL B 369 1 12 HELIX 11 11 GLY B 392 ILE B 396 5 5 HELIX 12 12 PRO B 397 GLY B 404 1 8 SHEET 1 A 2 LEU A 151 THR A 152 0 SHEET 2 A 2 PHE A 238 GLY A 239 1 O PHE A 238 N THR A 152 SHEET 1 B 4 PRO A 154 MET A 157 0 SHEET 2 B 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 B 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 B 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 C 4 VAL A 163 VAL A 164 0 SHEET 2 C 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 C 4 ALA A 221 VAL A 226 -1 N VAL A 226 O VAL A 243 SHEET 4 C 4 ILE A 188 ASN A 193 -1 N LYS A 189 O ALA A 225 SHEET 1 D 5 GLU A 271 PRO A 277 0 SHEET 2 D 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 D 5 VAL A 253 ASP A 258 -1 N ILE A 254 O ARG A 267 SHEET 4 D 5 ILE A 374 VAL A 378 1 O ILE A 374 N ALA A 255 SHEET 5 D 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 E 4 ARG A 297 ASP A 304 0 SHEET 2 E 4 ARG A 319 GLN A 327 -1 O THR A 320 N MET A 303 SHEET 3 E 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 E 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 F 4 PRO B 154 MET B 157 0 SHEET 2 F 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 F 4 GLU B 207 PRO B 212 -1 O VAL B 208 N ILE B 172 SHEET 4 F 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 G 4 VAL B 163 VAL B 164 0 SHEET 2 G 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 G 4 ALA B 221 VAL B 226 -1 N VAL B 222 O PHE B 247 SHEET 4 G 4 ILE B 188 ASN B 193 -1 N LYS B 189 O ALA B 225 SHEET 1 H 5 GLU B 271 PRO B 277 0 SHEET 2 H 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 H 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 H 5 ILE B 374 VAL B 378 1 O ILE B 374 N ALA B 255 SHEET 5 H 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 I 4 ARG B 297 ASP B 304 0 SHEET 2 I 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 I 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 I 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 C1 MXR A 502 1555 1555 1.78 LINK SG CYS B 354 C1 MXR B 502 1555 1555 1.80 CISPEP 1 MET A 157 PRO A 158 0 -0.08 CISPEP 2 MET A 157 PRO A 158 0 1.28 CISPEP 3 ASN A 193 PRO A 194 0 0.06 CISPEP 4 MET B 157 PRO B 158 0 0.94 CISPEP 5 MET B 157 PRO B 158 0 0.00 CISPEP 6 ASN B 193 PRO B 194 0 3.75 SITE 1 AC1 6 GLU A 213 HIS A 214 PHE A 215 ILE A 291 SITE 2 AC1 6 HOH A 765 HOH A 778 SITE 1 AC2 13 MET A 303 TYR A 308 TYR A 318 SER A 331 SITE 2 AC2 13 GLY A 332 VAL A 333 HIS A 352 GLY A 353 SITE 3 AC2 13 CYS A 354 HOH A 760 HOH A 929 ASP B 367 SITE 4 AC2 13 HOH B 670 SITE 1 AC3 5 HIS B 214 PHE B 215 ILE B 291 HOH B 780 SITE 2 AC3 5 HOH B 895 SITE 1 AC4 11 GLN A 363 HOH A 848 MET B 303 TYR B 308 SITE 2 AC4 11 TYR B 318 SER B 331 GLY B 332 HIS B 352 SITE 3 AC4 11 GLY B 353 CYS B 354 HOH B 965 CRYST1 67.610 73.280 103.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009650 0.00000