data_3VYQ # _entry.id 3VYQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VYQ pdb_00003vyq 10.2210/pdb3vyq/pdb NDB NA2058 ? ? RCSB RCSB095667 ? ? WWPDB D_1000095667 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3VXV . unspecified PDB 3VXX . unspecified PDB 3VYB . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VYQ _pdbx_database_status.recvd_initial_deposition_date 2012-10-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Otani, J.' 1 'Arita, K.' 2 'Kato, T.' 3 'Kinoshita, M.' 4 'Ariyoshi, M.' 5 'Shirakawa, M.' 6 # _citation.id primary _citation.title 'Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 6351 _citation.page_last 6362 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23316048 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.431098 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Otani, J.' 1 ? primary 'Arita, K.' 2 ? primary 'Kato, T.' 3 ? primary 'Kinoshita, M.' 4 ? primary 'Kimura, H.' 5 ? primary 'Suetake, I.' 6 ? primary 'Tajima, S.' 7 ? primary 'Ariyoshi, M.' 8 ? primary 'Shirakawa, M.' 9 ? # _cell.entry_id 3VYQ _cell.length_a 30.604 _cell.length_b 34.093 _cell.length_c 61.165 _cell.angle_alpha 75.28 _cell.angle_beta 77.76 _cell.angle_gamma 87.31 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VYQ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 8332.593 2 3.2.2.- ? 'methyl CpG binding domain, UNP residues 63-136' ? 2 polymer syn ;DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3') ; 3372.238 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3') ; 3364.208 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no STTATEGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG STTATEGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG A,D ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DA)(DT)(DC)(5CM)(DG)(DG)(DT)(DG)(DA)' ACATCCGGTGA B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DC)(DT)(DG)(DG)(DA)(DT)(DG)(DT)' TCACTGGATGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 THR n 1 4 ALA n 1 5 THR n 1 6 GLU n 1 7 GLY n 1 8 HIS n 1 9 LYS n 1 10 PRO n 1 11 VAL n 1 12 PRO n 1 13 CYS n 1 14 GLY n 1 15 TRP n 1 16 GLU n 1 17 ARG n 1 18 VAL n 1 19 VAL n 1 20 LYS n 1 21 GLN n 1 22 ARG n 1 23 LEU n 1 24 SER n 1 25 GLY n 1 26 LYS n 1 27 THR n 1 28 ALA n 1 29 GLY n 1 30 LYS n 1 31 PHE n 1 32 ASP n 1 33 VAL n 1 34 TYR n 1 35 PHE n 1 36 ILE n 1 37 SER n 1 38 PRO n 1 39 GLN n 1 40 GLY n 1 41 LEU n 1 42 LYS n 1 43 PHE n 1 44 ARG n 1 45 SER n 1 46 LYS n 1 47 ARG n 1 48 SER n 1 49 LEU n 1 50 ALA n 1 51 ASN n 1 52 TYR n 1 53 LEU n 1 54 LEU n 1 55 LYS n 1 56 ASN n 1 57 GLY n 1 58 GLU n 1 59 THR n 1 60 PHE n 1 61 LEU n 1 62 LYS n 1 63 PRO n 1 64 GLU n 1 65 ASP n 1 66 PHE n 1 67 ASN n 1 68 PHE n 1 69 THR n 1 70 VAL n 1 71 LEU n 1 72 PRO n 1 73 LYS n 1 74 GLY n 2 1 DA n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 5CM n 2 7 DG n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DA n 3 1 DT n 3 2 DC n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DA n 3 9 DT n 3 10 DG n 3 11 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mbd4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MBD4_MOUSE Q9Z2D7 1 STTATEGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG 63 ? 2 PDB 3VYQ 3VYQ 2 ? ? ? 3 PDB 3VYQ 3VYQ 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VYQ A 1 ? 74 ? Q9Z2D7 63 ? 136 ? 63 136 2 1 3VYQ D 1 ? 74 ? Q9Z2D7 63 ? 136 ? 63 136 3 2 3VYQ B 1 ? 11 ? 3VYQ 1 ? 11 ? 1 11 4 3 3VYQ C 1 ? 11 ? 3VYQ 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3VYQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '2mM zinc acetate, 100mM sodium cacodylate, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-06-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3VYQ _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 7225 _reflns.number_all 7786 _reflns.percent_possible_obs 92.8 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.3 _reflns.B_iso_Wilson_estimate 35.890 _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 67.4 _reflns_shell.Rmerge_I_obs 0.125 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VYQ _refine.ls_number_reflns_obs 7095 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.07 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.972 _refine.ls_d_res_high 2.525 _refine.ls_percent_reflns_obs 90.27 _refine.ls_R_factor_obs 0.1954 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1934 _refine.ls_R_factor_R_free 0.2365 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.55 _refine.ls_number_reflns_R_free 323 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.5379 _refine.aniso_B[1][1] -4.2347 _refine.aniso_B[2][2] 5.9693 _refine.aniso_B[3][3] -1.7345 _refine.aniso_B[1][2] -8.4430 _refine.aniso_B[1][3] -4.6272 _refine.aniso_B[2][3] 2.7744 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.314 _refine.solvent_model_param_bsol 26.543 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3VXV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.B_iso_max 109.830 _refine.B_iso_min 11.860 _refine.pdbx_overall_phase_error 26.1100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1030 _refine_hist.pdbx_number_atoms_nucleic_acid 429 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1521 _refine_hist.d_res_high 2.525 _refine_hist.d_res_low 32.972 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 1542 ? 'X-RAY DIFFRACTION' f_angle_d 1.161 ? ? 2158 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 23.241 ? ? 605 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.062 ? ? 228 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 201 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 'X-RAY DIFFRACTION' 1 1 POSITIONAL A 376 0.037 ? ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' 1 2 POSITIONAL D 376 0.037 ? ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 2 2.5253 3.1812 3093 0.2485 82.00 0.3347 . . 149 . . . . 'X-RAY DIFFRACTION' 2 3.1812 32.9752 3679 0.1745 98.00 0.2057 . . 174 . . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A LYS 9 . A GLN 21 . A LYS 71 A GLN 83 ? 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 1 2 A LEU 23 . A GLY 25 . A LEU 85 A GLY 87 ? 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 1 3 A PHE 35 . A PHE 43 . A PHE 97 A PHE 105 ? 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 1 4 A SER 48 . A LEU 54 . A SER 110 A LEU 116 ? 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 1 5 A ASN 56 . A VAL 70 . A ASN 118 A VAL 132 ? 'chain A and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 1 D LYS 9 . D GLN 21 . D LYS 71 D GLN 83 ? 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 2 D LEU 23 . D GLY 25 . D LEU 85 D GLY 87 ? 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 3 D PHE 35 . D PHE 43 . D PHE 97 D PHE 105 ? 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 4 D SER 48 . D LEU 54 . D SER 110 D LEU 116 ? 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' 1 2 5 D ASN 56 . D VAL 70 . D ASN 118 D VAL 132 ? 'chain D and (resseq 71:83 or resseq 85:87 or resseq 97:105 or resseq 110:116 or resseq 118:132 )' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3VYQ _struct.title 'Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VYQ _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'methyl CpG binding domain, protein-DNA complex, versatile base recognition, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 4 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 45 ? ASN A 56 ? SER A 107 ASN A 118 1 ? 12 HELX_P HELX_P2 2 LYS A 62 ? PHE A 66 ? LYS A 124 PHE A 128 5 ? 5 HELX_P HELX_P3 3 SER D 45 ? ASN D 56 ? SER D 107 ASN D 118 1 ? 12 HELX_P HELX_P4 4 LYS D 62 ? PHE D 66 ? LYS D 124 PHE D 128 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 5 "O3'" ? ? ? 1_555 B 5CM 6 P ? ? B DC 5 B 5CM 6 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? B 5CM 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B 5CM 6 B DG 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A CYS 13 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 75 A ZN 201 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 201 A HOH 311 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc3 metalc ? ? D HIS 8 ND1 ? ? ? 1_555 H ZN . ZN ? ? D HIS 70 D ZN 202 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc4 metalc ? ? D CYS 13 SG ? ? ? 1_555 G ZN . ZN ? ? D CYS 75 D ZN 201 1_555 ? ? ? ? ? ? ? 2.500 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 2 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 2 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 2 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 3 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 3 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 4 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 4 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 5 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 5 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 5 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B 5CM 6 N3 ? ? ? 1_555 C DG 6 N1 ? ? B 5CM 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B 5CM 6 N4 ? ? ? 1_555 C DG 6 O6 ? ? B 5CM 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B 5CM 6 O2 ? ? ? 1_555 C DG 6 N2 ? ? B 5CM 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DT 5 O2 ? ? B DG 7 C DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DT 5 N3 ? ? B DG 7 C DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 9 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 9 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 10 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 10 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 10 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 16 ? GLN A 21 ? GLU A 78 GLN A 83 A 2 PHE A 31 ? ILE A 36 ? PHE A 93 ILE A 98 A 3 LYS A 42 ? PHE A 43 ? LYS A 104 PHE A 105 B 1 GLU D 16 ? GLN D 21 ? GLU D 78 GLN D 83 B 2 PHE D 31 ? ILE D 36 ? PHE D 93 ILE D 98 B 3 LYS D 42 ? PHE D 43 ? LYS D 104 PHE D 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 20 ? N LYS A 82 O ASP A 32 ? O ASP A 94 A 2 3 N PHE A 35 ? N PHE A 97 O PHE A 43 ? O PHE A 105 B 1 2 N VAL D 18 ? N VAL D 80 O TYR D 34 ? O TYR D 96 B 2 3 N PHE D 35 ? N PHE D 97 O PHE D 43 ? O PHE D 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software B EDO 101 ? 2 'BINDING SITE FOR RESIDUE EDO B 101' AC3 Software D ZN 201 ? 3 'BINDING SITE FOR RESIDUE ZN D 201' AC4 Software D ZN 202 ? 2 'BINDING SITE FOR RESIDUE ZN D 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 13 ? CYS A 75 . ? 1_555 ? 2 AC1 4 HOH I . ? HOH A 311 . ? 1_555 ? 3 AC1 4 GLU D 58 ? GLU D 120 . ? 1_556 ? 4 AC1 4 HOH L . ? HOH D 303 . ? 1_556 ? 5 AC2 2 DG B 10 ? DG B 10 . ? 1_555 ? 6 AC2 2 ARG D 44 ? ARG D 106 . ? 1_565 ? 7 AC3 3 GLU A 58 ? GLU A 120 . ? 1_554 ? 8 AC3 3 HOH I . ? HOH A 320 . ? 1_554 ? 9 AC3 3 CYS D 13 ? CYS D 75 . ? 1_555 ? 10 AC4 2 HIS A 8 ? HIS A 70 . ? 1_654 ? 11 AC4 2 HIS D 8 ? HIS D 70 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VYQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VYQ _atom_sites.fract_transf_matrix[1][1] 0.032675 _atom_sites.fract_transf_matrix[1][2] -0.001538 _atom_sites.fract_transf_matrix[1][3] -0.006922 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029364 _atom_sites.fract_transf_matrix[2][3] -0.007587 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017279 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 63 ? ? ? A . n A 1 2 THR 2 64 ? ? ? A . n A 1 3 THR 3 65 ? ? ? A . n A 1 4 ALA 4 66 ? ? ? A . n A 1 5 THR 5 67 ? ? ? A . n A 1 6 GLU 6 68 ? ? ? A . n A 1 7 GLY 7 69 ? ? ? A . n A 1 8 HIS 8 70 70 HIS HIS A . n A 1 9 LYS 9 71 71 LYS LYS A . n A 1 10 PRO 10 72 72 PRO PRO A . n A 1 11 VAL 11 73 73 VAL VAL A . n A 1 12 PRO 12 74 74 PRO PRO A . n A 1 13 CYS 13 75 75 CYS CYS A . n A 1 14 GLY 14 76 76 GLY GLY A . n A 1 15 TRP 15 77 77 TRP TRP A . n A 1 16 GLU 16 78 78 GLU GLU A . n A 1 17 ARG 17 79 79 ARG ARG A . n A 1 18 VAL 18 80 80 VAL VAL A . n A 1 19 VAL 19 81 81 VAL VAL A . n A 1 20 LYS 20 82 82 LYS LYS A . n A 1 21 GLN 21 83 83 GLN GLN A . n A 1 22 ARG 22 84 84 ARG ARG A . n A 1 23 LEU 23 85 85 LEU LEU A . n A 1 24 SER 24 86 86 SER SER A . n A 1 25 GLY 25 87 87 GLY GLY A . n A 1 26 LYS 26 88 88 LYS LYS A . n A 1 27 THR 27 89 89 THR THR A . n A 1 28 ALA 28 90 90 ALA ALA A . n A 1 29 GLY 29 91 91 GLY GLY A . n A 1 30 LYS 30 92 92 LYS LYS A . n A 1 31 PHE 31 93 93 PHE PHE A . n A 1 32 ASP 32 94 94 ASP ASP A . n A 1 33 VAL 33 95 95 VAL VAL A . n A 1 34 TYR 34 96 96 TYR TYR A . n A 1 35 PHE 35 97 97 PHE PHE A . n A 1 36 ILE 36 98 98 ILE ILE A . n A 1 37 SER 37 99 99 SER SER A . n A 1 38 PRO 38 100 100 PRO PRO A . n A 1 39 GLN 39 101 101 GLN GLN A . n A 1 40 GLY 40 102 102 GLY GLY A . n A 1 41 LEU 41 103 103 LEU LEU A . n A 1 42 LYS 42 104 104 LYS LYS A . n A 1 43 PHE 43 105 105 PHE PHE A . n A 1 44 ARG 44 106 106 ARG ARG A . n A 1 45 SER 45 107 107 SER SER A . n A 1 46 LYS 46 108 108 LYS LYS A . n A 1 47 ARG 47 109 109 ARG ARG A . n A 1 48 SER 48 110 110 SER SER A . n A 1 49 LEU 49 111 111 LEU LEU A . n A 1 50 ALA 50 112 112 ALA ALA A . n A 1 51 ASN 51 113 113 ASN ASN A . n A 1 52 TYR 52 114 114 TYR TYR A . n A 1 53 LEU 53 115 115 LEU LEU A . n A 1 54 LEU 54 116 116 LEU LEU A . n A 1 55 LYS 55 117 117 LYS LYS A . n A 1 56 ASN 56 118 118 ASN ASN A . n A 1 57 GLY 57 119 119 GLY GLY A . n A 1 58 GLU 58 120 120 GLU GLU A . n A 1 59 THR 59 121 121 THR THR A . n A 1 60 PHE 60 122 122 PHE PHE A . n A 1 61 LEU 61 123 123 LEU LEU A . n A 1 62 LYS 62 124 124 LYS LYS A . n A 1 63 PRO 63 125 125 PRO PRO A . n A 1 64 GLU 64 126 126 GLU GLU A . n A 1 65 ASP 65 127 127 ASP ASP A . n A 1 66 PHE 66 128 128 PHE PHE A . n A 1 67 ASN 67 129 129 ASN ASN A . n A 1 68 PHE 68 130 130 PHE PHE A . n A 1 69 THR 69 131 131 THR THR A . n A 1 70 VAL 70 132 132 VAL VAL A . n A 1 71 LEU 71 133 ? ? ? A . n A 1 72 PRO 72 134 ? ? ? A . n A 1 73 LYS 73 135 ? ? ? A . n A 1 74 GLY 74 136 ? ? ? A . n B 2 1 DA 1 1 ? ? ? B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 5CM 6 6 6 5CM 5CM B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DA 11 11 11 DA DA B . n C 3 1 DT 1 1 1 DT DT C . n C 3 2 DC 2 2 2 DC DC C . n C 3 3 DA 3 3 3 DA DA C . n C 3 4 DC 4 4 4 DC DC C . n C 3 5 DT 5 5 5 DT DT C . n C 3 6 DG 6 6 6 DG DG C . n C 3 7 DG 7 7 7 DG DG C . n C 3 8 DA 8 8 8 DA DA C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DG 10 10 10 DG DG C . n C 3 11 DT 11 11 11 DT DT C . n D 1 1 SER 1 63 ? ? ? D . n D 1 2 THR 2 64 ? ? ? D . n D 1 3 THR 3 65 ? ? ? D . n D 1 4 ALA 4 66 ? ? ? D . n D 1 5 THR 5 67 ? ? ? D . n D 1 6 GLU 6 68 ? ? ? D . n D 1 7 GLY 7 69 ? ? ? D . n D 1 8 HIS 8 70 70 HIS HIS D . n D 1 9 LYS 9 71 71 LYS LYS D . n D 1 10 PRO 10 72 72 PRO PRO D . n D 1 11 VAL 11 73 73 VAL VAL D . n D 1 12 PRO 12 74 74 PRO PRO D . n D 1 13 CYS 13 75 75 CYS CYS D . n D 1 14 GLY 14 76 76 GLY GLY D . n D 1 15 TRP 15 77 77 TRP TRP D . n D 1 16 GLU 16 78 78 GLU GLU D . n D 1 17 ARG 17 79 79 ARG ARG D . n D 1 18 VAL 18 80 80 VAL VAL D . n D 1 19 VAL 19 81 81 VAL VAL D . n D 1 20 LYS 20 82 82 LYS LYS D . n D 1 21 GLN 21 83 83 GLN GLN D . n D 1 22 ARG 22 84 84 ARG ARG D . n D 1 23 LEU 23 85 85 LEU LEU D . n D 1 24 SER 24 86 86 SER SER D . n D 1 25 GLY 25 87 87 GLY GLY D . n D 1 26 LYS 26 88 88 LYS LYS D . n D 1 27 THR 27 89 89 THR THR D . n D 1 28 ALA 28 90 90 ALA ALA D . n D 1 29 GLY 29 91 91 GLY GLY D . n D 1 30 LYS 30 92 92 LYS LYS D . n D 1 31 PHE 31 93 93 PHE PHE D . n D 1 32 ASP 32 94 94 ASP ASP D . n D 1 33 VAL 33 95 95 VAL VAL D . n D 1 34 TYR 34 96 96 TYR TYR D . n D 1 35 PHE 35 97 97 PHE PHE D . n D 1 36 ILE 36 98 98 ILE ILE D . n D 1 37 SER 37 99 99 SER SER D . n D 1 38 PRO 38 100 100 PRO PRO D . n D 1 39 GLN 39 101 101 GLN GLN D . n D 1 40 GLY 40 102 102 GLY GLY D . n D 1 41 LEU 41 103 103 LEU LEU D . n D 1 42 LYS 42 104 104 LYS LYS D . n D 1 43 PHE 43 105 105 PHE PHE D . n D 1 44 ARG 44 106 106 ARG ARG D . n D 1 45 SER 45 107 107 SER SER D . n D 1 46 LYS 46 108 108 LYS LYS D . n D 1 47 ARG 47 109 109 ARG ARG D . n D 1 48 SER 48 110 110 SER SER D . n D 1 49 LEU 49 111 111 LEU LEU D . n D 1 50 ALA 50 112 112 ALA ALA D . n D 1 51 ASN 51 113 113 ASN ASN D . n D 1 52 TYR 52 114 114 TYR TYR D . n D 1 53 LEU 53 115 115 LEU LEU D . n D 1 54 LEU 54 116 116 LEU LEU D . n D 1 55 LYS 55 117 117 LYS LYS D . n D 1 56 ASN 56 118 118 ASN ASN D . n D 1 57 GLY 57 119 119 GLY GLY D . n D 1 58 GLU 58 120 120 GLU GLU D . n D 1 59 THR 59 121 121 THR THR D . n D 1 60 PHE 60 122 122 PHE PHE D . n D 1 61 LEU 61 123 123 LEU LEU D . n D 1 62 LYS 62 124 124 LYS LYS D . n D 1 63 PRO 63 125 125 PRO PRO D . n D 1 64 GLU 64 126 126 GLU GLU D . n D 1 65 ASP 65 127 127 ASP ASP D . n D 1 66 PHE 66 128 128 PHE PHE D . n D 1 67 ASN 67 129 129 ASN ASN D . n D 1 68 PHE 68 130 130 PHE PHE D . n D 1 69 THR 69 131 131 THR THR D . n D 1 70 VAL 70 132 132 VAL VAL D . n D 1 71 LEU 71 133 ? ? ? D . n D 1 72 PRO 72 134 ? ? ? D . n D 1 73 LYS 73 135 ? ? ? D . n D 1 74 GLY 74 136 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 201 1 ZN ZN A . F 5 EDO 1 101 1 EDO EDO B . G 4 ZN 1 201 2 ZN ZN D . H 4 ZN 1 202 3 ZN ZN D . I 6 HOH 1 301 2 HOH HOH A . I 6 HOH 2 302 5 HOH HOH A . I 6 HOH 3 303 9 HOH HOH A . I 6 HOH 4 304 12 HOH HOH A . I 6 HOH 5 305 13 HOH HOH A . I 6 HOH 6 306 15 HOH HOH A . I 6 HOH 7 307 16 HOH HOH A . I 6 HOH 8 308 22 HOH HOH A . I 6 HOH 9 309 24 HOH HOH A . I 6 HOH 10 310 25 HOH HOH A . I 6 HOH 11 311 26 HOH HOH A . I 6 HOH 12 312 31 HOH HOH A . I 6 HOH 13 313 32 HOH HOH A . I 6 HOH 14 314 33 HOH HOH A . I 6 HOH 15 315 37 HOH HOH A . I 6 HOH 16 316 38 HOH HOH A . I 6 HOH 17 317 53 HOH HOH A . I 6 HOH 18 318 54 HOH HOH A . I 6 HOH 19 319 55 HOH HOH A . I 6 HOH 20 320 6 HOH HOH A . J 6 HOH 1 201 4 HOH HOH B . J 6 HOH 2 202 7 HOH HOH B . J 6 HOH 3 203 8 HOH HOH B . J 6 HOH 4 204 10 HOH HOH B . J 6 HOH 5 205 19 HOH HOH B . J 6 HOH 6 206 28 HOH HOH B . J 6 HOH 7 207 29 HOH HOH B . J 6 HOH 8 208 34 HOH HOH B . J 6 HOH 9 209 41 HOH HOH B . J 6 HOH 10 210 43 HOH HOH B . J 6 HOH 11 211 48 HOH HOH B . J 6 HOH 12 212 50 HOH HOH B . K 6 HOH 1 101 1 HOH HOH C . K 6 HOH 2 102 14 HOH HOH C . K 6 HOH 3 103 20 HOH HOH C . K 6 HOH 4 104 21 HOH HOH C . K 6 HOH 5 105 35 HOH HOH C . K 6 HOH 6 106 36 HOH HOH C . K 6 HOH 7 107 39 HOH HOH C . K 6 HOH 8 108 40 HOH HOH C . K 6 HOH 9 109 42 HOH HOH C . K 6 HOH 10 110 49 HOH HOH C . L 6 HOH 1 301 30 HOH HOH D . L 6 HOH 2 302 46 HOH HOH D . L 6 HOH 3 303 47 HOH HOH D . L 6 HOH 4 304 45 HOH HOH D . L 6 HOH 5 305 3 HOH HOH D . L 6 HOH 6 306 11 HOH HOH D . L 6 HOH 7 307 17 HOH HOH D . L 6 HOH 8 308 18 HOH HOH D . L 6 HOH 9 309 23 HOH HOH D . L 6 HOH 10 310 27 HOH HOH D . L 6 HOH 11 311 44 HOH HOH D . L 6 HOH 12 312 51 HOH HOH D . L 6 HOH 13 313 52 HOH HOH D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4150 ? 1 MORE -60 ? 1 'SSA (A^2)' 11630 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id SG _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id CYS _pdbx_struct_conn_angle.ptnr1_label_seq_id 13 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id CYS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 75 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id ZN _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id ZN _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id ZN _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id I _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 311 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 129.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2013-08-14 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ncs_dom_lim 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 19 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 20 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 21 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 22 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 23 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 24 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 25 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 26 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 13.0063 -10.4065 9.1365 0.1382 0.2943 0.0735 0.0286 0.0360 0.0025 3.0406 0.9350 2.1090 -0.4356 0.5684 -0.2984 0.2038 -0.5951 -0.0653 -0.0662 0.0845 0.1188 -0.0179 -0.0396 -0.1596 'X-RAY DIFFRACTION' 2 ? refined 11.581 -8.714 -5.848 0.3294 0.1360 0.2122 0.0826 0.0176 -0.0588 4.7090 7.7506 5.4614 -4.0205 3.8515 -3.1737 0.2764 0.3929 0.6010 0.1410 -0.8930 0.1245 -0.9129 0.3172 -0.2417 'X-RAY DIFFRACTION' 3 ? refined 11.8095 -10.5140 -5.3296 0.3276 0.1257 0.1544 0.0295 -0.0316 0.0060 2.5678 0.5355 2.8119 -0.5116 -0.9572 -0.8178 0.2461 -0.0240 -0.0368 -0.3666 -0.4822 -0.0210 -0.1797 -0.2425 0.1551 'X-RAY DIFFRACTION' 4 ? refined 10.3282 -26.2174 -22.2785 0.1750 0.4176 0.0829 0.1229 0.0639 0.0262 2.2885 1.0114 1.0790 -0.0977 0.4555 -0.1188 -0.1358 0.0607 -0.3282 0.0522 0.2831 -0.0335 -0.0555 0.0083 -0.1095 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 70 A 132 '(chain A and resid 70:132)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 2 B 11 '(chain B and resid 2:11)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 11 '(chain C and resid 1:11)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 70 D 132 '(chain D and resid 70:132)' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DG 7 ? ? "C2'" C DG 7 ? ? "C1'" C DG 7 ? ? 95.00 102.40 -7.40 0.80 N 2 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 112.42 108.30 4.12 0.30 N 3 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 102.30 108.00 -5.70 0.70 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 63 ? A SER 1 2 1 Y 1 A THR 64 ? A THR 2 3 1 Y 1 A THR 65 ? A THR 3 4 1 Y 1 A ALA 66 ? A ALA 4 5 1 Y 1 A THR 67 ? A THR 5 6 1 Y 1 A GLU 68 ? A GLU 6 7 1 Y 1 A GLY 69 ? A GLY 7 8 1 Y 1 A LEU 133 ? A LEU 71 9 1 Y 1 A PRO 134 ? A PRO 72 10 1 Y 1 A LYS 135 ? A LYS 73 11 1 Y 1 A GLY 136 ? A GLY 74 12 1 Y 1 B DA 1 ? B DA 1 13 1 Y 1 D SER 63 ? D SER 1 14 1 Y 1 D THR 64 ? D THR 2 15 1 Y 1 D THR 65 ? D THR 3 16 1 Y 1 D ALA 66 ? D ALA 4 17 1 Y 1 D THR 67 ? D THR 5 18 1 Y 1 D GLU 68 ? D GLU 6 19 1 Y 1 D GLY 69 ? D GLY 7 20 1 Y 1 D LEU 133 ? D LEU 71 21 1 Y 1 D PRO 134 ? D PRO 72 22 1 Y 1 D LYS 135 ? D LYS 73 23 1 Y 1 D GLY 136 ? D GLY 74 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 EDO C1 C N N 268 EDO O1 O N N 269 EDO C2 C N N 270 EDO O2 O N N 271 EDO H11 H N N 272 EDO H12 H N N 273 EDO HO1 H N N 274 EDO H21 H N N 275 EDO H22 H N N 276 EDO HO2 H N N 277 GLN N N N N 278 GLN CA C N S 279 GLN C C N N 280 GLN O O N N 281 GLN CB C N N 282 GLN CG C N N 283 GLN CD C N N 284 GLN OE1 O N N 285 GLN NE2 N N N 286 GLN OXT O N N 287 GLN H H N N 288 GLN H2 H N N 289 GLN HA H N N 290 GLN HB2 H N N 291 GLN HB3 H N N 292 GLN HG2 H N N 293 GLN HG3 H N N 294 GLN HE21 H N N 295 GLN HE22 H N N 296 GLN HXT H N N 297 GLU N N N N 298 GLU CA C N S 299 GLU C C N N 300 GLU O O N N 301 GLU CB C N N 302 GLU CG C N N 303 GLU CD C N N 304 GLU OE1 O N N 305 GLU OE2 O N N 306 GLU OXT O N N 307 GLU H H N N 308 GLU H2 H N N 309 GLU HA H N N 310 GLU HB2 H N N 311 GLU HB3 H N N 312 GLU HG2 H N N 313 GLU HG3 H N N 314 GLU HE2 H N N 315 GLU HXT H N N 316 GLY N N N N 317 GLY CA C N N 318 GLY C C N N 319 GLY O O N N 320 GLY OXT O N N 321 GLY H H N N 322 GLY H2 H N N 323 GLY HA2 H N N 324 GLY HA3 H N N 325 GLY HXT H N N 326 HIS N N N N 327 HIS CA C N S 328 HIS C C N N 329 HIS O O N N 330 HIS CB C N N 331 HIS CG C Y N 332 HIS ND1 N Y N 333 HIS CD2 C Y N 334 HIS CE1 C Y N 335 HIS NE2 N Y N 336 HIS OXT O N N 337 HIS H H N N 338 HIS H2 H N N 339 HIS HA H N N 340 HIS HB2 H N N 341 HIS HB3 H N N 342 HIS HD1 H N N 343 HIS HD2 H N N 344 HIS HE1 H N N 345 HIS HE2 H N N 346 HIS HXT H N N 347 HOH O O N N 348 HOH H1 H N N 349 HOH H2 H N N 350 ILE N N N N 351 ILE CA C N S 352 ILE C C N N 353 ILE O O N N 354 ILE CB C N S 355 ILE CG1 C N N 356 ILE CG2 C N N 357 ILE CD1 C N N 358 ILE OXT O N N 359 ILE H H N N 360 ILE H2 H N N 361 ILE HA H N N 362 ILE HB H N N 363 ILE HG12 H N N 364 ILE HG13 H N N 365 ILE HG21 H N N 366 ILE HG22 H N N 367 ILE HG23 H N N 368 ILE HD11 H N N 369 ILE HD12 H N N 370 ILE HD13 H N N 371 ILE HXT H N N 372 LEU N N N N 373 LEU CA C N S 374 LEU C C N N 375 LEU O O N N 376 LEU CB C N N 377 LEU CG C N N 378 LEU CD1 C N N 379 LEU CD2 C N N 380 LEU OXT O N N 381 LEU H H N N 382 LEU H2 H N N 383 LEU HA H N N 384 LEU HB2 H N N 385 LEU HB3 H N N 386 LEU HG H N N 387 LEU HD11 H N N 388 LEU HD12 H N N 389 LEU HD13 H N N 390 LEU HD21 H N N 391 LEU HD22 H N N 392 LEU HD23 H N N 393 LEU HXT H N N 394 LYS N N N N 395 LYS CA C N S 396 LYS C C N N 397 LYS O O N N 398 LYS CB C N N 399 LYS CG C N N 400 LYS CD C N N 401 LYS CE C N N 402 LYS NZ N N N 403 LYS OXT O N N 404 LYS H H N N 405 LYS H2 H N N 406 LYS HA H N N 407 LYS HB2 H N N 408 LYS HB3 H N N 409 LYS HG2 H N N 410 LYS HG3 H N N 411 LYS HD2 H N N 412 LYS HD3 H N N 413 LYS HE2 H N N 414 LYS HE3 H N N 415 LYS HZ1 H N N 416 LYS HZ2 H N N 417 LYS HZ3 H N N 418 LYS HXT H N N 419 PHE N N N N 420 PHE CA C N S 421 PHE C C N N 422 PHE O O N N 423 PHE CB C N N 424 PHE CG C Y N 425 PHE CD1 C Y N 426 PHE CD2 C Y N 427 PHE CE1 C Y N 428 PHE CE2 C Y N 429 PHE CZ C Y N 430 PHE OXT O N N 431 PHE H H N N 432 PHE H2 H N N 433 PHE HA H N N 434 PHE HB2 H N N 435 PHE HB3 H N N 436 PHE HD1 H N N 437 PHE HD2 H N N 438 PHE HE1 H N N 439 PHE HE2 H N N 440 PHE HZ H N N 441 PHE HXT H N N 442 PRO N N N N 443 PRO CA C N S 444 PRO C C N N 445 PRO O O N N 446 PRO CB C N N 447 PRO CG C N N 448 PRO CD C N N 449 PRO OXT O N N 450 PRO H H N N 451 PRO HA H N N 452 PRO HB2 H N N 453 PRO HB3 H N N 454 PRO HG2 H N N 455 PRO HG3 H N N 456 PRO HD2 H N N 457 PRO HD3 H N N 458 PRO HXT H N N 459 SER N N N N 460 SER CA C N S 461 SER C C N N 462 SER O O N N 463 SER CB C N N 464 SER OG O N N 465 SER OXT O N N 466 SER H H N N 467 SER H2 H N N 468 SER HA H N N 469 SER HB2 H N N 470 SER HB3 H N N 471 SER HG H N N 472 SER HXT H N N 473 THR N N N N 474 THR CA C N S 475 THR C C N N 476 THR O O N N 477 THR CB C N R 478 THR OG1 O N N 479 THR CG2 C N N 480 THR OXT O N N 481 THR H H N N 482 THR H2 H N N 483 THR HA H N N 484 THR HB H N N 485 THR HG1 H N N 486 THR HG21 H N N 487 THR HG22 H N N 488 THR HG23 H N N 489 THR HXT H N N 490 TRP N N N N 491 TRP CA C N S 492 TRP C C N N 493 TRP O O N N 494 TRP CB C N N 495 TRP CG C Y N 496 TRP CD1 C Y N 497 TRP CD2 C Y N 498 TRP NE1 N Y N 499 TRP CE2 C Y N 500 TRP CE3 C Y N 501 TRP CZ2 C Y N 502 TRP CZ3 C Y N 503 TRP CH2 C Y N 504 TRP OXT O N N 505 TRP H H N N 506 TRP H2 H N N 507 TRP HA H N N 508 TRP HB2 H N N 509 TRP HB3 H N N 510 TRP HD1 H N N 511 TRP HE1 H N N 512 TRP HE3 H N N 513 TRP HZ2 H N N 514 TRP HZ3 H N N 515 TRP HH2 H N N 516 TRP HXT H N N 517 TYR N N N N 518 TYR CA C N S 519 TYR C C N N 520 TYR O O N N 521 TYR CB C N N 522 TYR CG C Y N 523 TYR CD1 C Y N 524 TYR CD2 C Y N 525 TYR CE1 C Y N 526 TYR CE2 C Y N 527 TYR CZ C Y N 528 TYR OH O N N 529 TYR OXT O N N 530 TYR H H N N 531 TYR H2 H N N 532 TYR HA H N N 533 TYR HB2 H N N 534 TYR HB3 H N N 535 TYR HD1 H N N 536 TYR HD2 H N N 537 TYR HE1 H N N 538 TYR HE2 H N N 539 TYR HH H N N 540 TYR HXT H N N 541 VAL N N N N 542 VAL CA C N S 543 VAL C C N N 544 VAL O O N N 545 VAL CB C N N 546 VAL CG1 C N N 547 VAL CG2 C N N 548 VAL OXT O N N 549 VAL H H N N 550 VAL H2 H N N 551 VAL HA H N N 552 VAL HB H N N 553 VAL HG11 H N N 554 VAL HG12 H N N 555 VAL HG13 H N N 556 VAL HG21 H N N 557 VAL HG22 H N N 558 VAL HG23 H N N 559 VAL HXT H N N 560 ZN ZN ZN N N 561 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 EDO C1 O1 sing N N 270 EDO C1 C2 sing N N 271 EDO C1 H11 sing N N 272 EDO C1 H12 sing N N 273 EDO O1 HO1 sing N N 274 EDO C2 O2 sing N N 275 EDO C2 H21 sing N N 276 EDO C2 H22 sing N N 277 EDO O2 HO2 sing N N 278 GLN N CA sing N N 279 GLN N H sing N N 280 GLN N H2 sing N N 281 GLN CA C sing N N 282 GLN CA CB sing N N 283 GLN CA HA sing N N 284 GLN C O doub N N 285 GLN C OXT sing N N 286 GLN CB CG sing N N 287 GLN CB HB2 sing N N 288 GLN CB HB3 sing N N 289 GLN CG CD sing N N 290 GLN CG HG2 sing N N 291 GLN CG HG3 sing N N 292 GLN CD OE1 doub N N 293 GLN CD NE2 sing N N 294 GLN NE2 HE21 sing N N 295 GLN NE2 HE22 sing N N 296 GLN OXT HXT sing N N 297 GLU N CA sing N N 298 GLU N H sing N N 299 GLU N H2 sing N N 300 GLU CA C sing N N 301 GLU CA CB sing N N 302 GLU CA HA sing N N 303 GLU C O doub N N 304 GLU C OXT sing N N 305 GLU CB CG sing N N 306 GLU CB HB2 sing N N 307 GLU CB HB3 sing N N 308 GLU CG CD sing N N 309 GLU CG HG2 sing N N 310 GLU CG HG3 sing N N 311 GLU CD OE1 doub N N 312 GLU CD OE2 sing N N 313 GLU OE2 HE2 sing N N 314 GLU OXT HXT sing N N 315 GLY N CA sing N N 316 GLY N H sing N N 317 GLY N H2 sing N N 318 GLY CA C sing N N 319 GLY CA HA2 sing N N 320 GLY CA HA3 sing N N 321 GLY C O doub N N 322 GLY C OXT sing N N 323 GLY OXT HXT sing N N 324 HIS N CA sing N N 325 HIS N H sing N N 326 HIS N H2 sing N N 327 HIS CA C sing N N 328 HIS CA CB sing N N 329 HIS CA HA sing N N 330 HIS C O doub N N 331 HIS C OXT sing N N 332 HIS CB CG sing N N 333 HIS CB HB2 sing N N 334 HIS CB HB3 sing N N 335 HIS CG ND1 sing Y N 336 HIS CG CD2 doub Y N 337 HIS ND1 CE1 doub Y N 338 HIS ND1 HD1 sing N N 339 HIS CD2 NE2 sing Y N 340 HIS CD2 HD2 sing N N 341 HIS CE1 NE2 sing Y N 342 HIS CE1 HE1 sing N N 343 HIS NE2 HE2 sing N N 344 HIS OXT HXT sing N N 345 HOH O H1 sing N N 346 HOH O H2 sing N N 347 ILE N CA sing N N 348 ILE N H sing N N 349 ILE N H2 sing N N 350 ILE CA C sing N N 351 ILE CA CB sing N N 352 ILE CA HA sing N N 353 ILE C O doub N N 354 ILE C OXT sing N N 355 ILE CB CG1 sing N N 356 ILE CB CG2 sing N N 357 ILE CB HB sing N N 358 ILE CG1 CD1 sing N N 359 ILE CG1 HG12 sing N N 360 ILE CG1 HG13 sing N N 361 ILE CG2 HG21 sing N N 362 ILE CG2 HG22 sing N N 363 ILE CG2 HG23 sing N N 364 ILE CD1 HD11 sing N N 365 ILE CD1 HD12 sing N N 366 ILE CD1 HD13 sing N N 367 ILE OXT HXT sing N N 368 LEU N CA sing N N 369 LEU N H sing N N 370 LEU N H2 sing N N 371 LEU CA C sing N N 372 LEU CA CB sing N N 373 LEU CA HA sing N N 374 LEU C O doub N N 375 LEU C OXT sing N N 376 LEU CB CG sing N N 377 LEU CB HB2 sing N N 378 LEU CB HB3 sing N N 379 LEU CG CD1 sing N N 380 LEU CG CD2 sing N N 381 LEU CG HG sing N N 382 LEU CD1 HD11 sing N N 383 LEU CD1 HD12 sing N N 384 LEU CD1 HD13 sing N N 385 LEU CD2 HD21 sing N N 386 LEU CD2 HD22 sing N N 387 LEU CD2 HD23 sing N N 388 LEU OXT HXT sing N N 389 LYS N CA sing N N 390 LYS N H sing N N 391 LYS N H2 sing N N 392 LYS CA C sing N N 393 LYS CA CB sing N N 394 LYS CA HA sing N N 395 LYS C O doub N N 396 LYS C OXT sing N N 397 LYS CB CG sing N N 398 LYS CB HB2 sing N N 399 LYS CB HB3 sing N N 400 LYS CG CD sing N N 401 LYS CG HG2 sing N N 402 LYS CG HG3 sing N N 403 LYS CD CE sing N N 404 LYS CD HD2 sing N N 405 LYS CD HD3 sing N N 406 LYS CE NZ sing N N 407 LYS CE HE2 sing N N 408 LYS CE HE3 sing N N 409 LYS NZ HZ1 sing N N 410 LYS NZ HZ2 sing N N 411 LYS NZ HZ3 sing N N 412 LYS OXT HXT sing N N 413 PHE N CA sing N N 414 PHE N H sing N N 415 PHE N H2 sing N N 416 PHE CA C sing N N 417 PHE CA CB sing N N 418 PHE CA HA sing N N 419 PHE C O doub N N 420 PHE C OXT sing N N 421 PHE CB CG sing N N 422 PHE CB HB2 sing N N 423 PHE CB HB3 sing N N 424 PHE CG CD1 doub Y N 425 PHE CG CD2 sing Y N 426 PHE CD1 CE1 sing Y N 427 PHE CD1 HD1 sing N N 428 PHE CD2 CE2 doub Y N 429 PHE CD2 HD2 sing N N 430 PHE CE1 CZ doub Y N 431 PHE CE1 HE1 sing N N 432 PHE CE2 CZ sing Y N 433 PHE CE2 HE2 sing N N 434 PHE CZ HZ sing N N 435 PHE OXT HXT sing N N 436 PRO N CA sing N N 437 PRO N CD sing N N 438 PRO N H sing N N 439 PRO CA C sing N N 440 PRO CA CB sing N N 441 PRO CA HA sing N N 442 PRO C O doub N N 443 PRO C OXT sing N N 444 PRO CB CG sing N N 445 PRO CB HB2 sing N N 446 PRO CB HB3 sing N N 447 PRO CG CD sing N N 448 PRO CG HG2 sing N N 449 PRO CG HG3 sing N N 450 PRO CD HD2 sing N N 451 PRO CD HD3 sing N N 452 PRO OXT HXT sing N N 453 SER N CA sing N N 454 SER N H sing N N 455 SER N H2 sing N N 456 SER CA C sing N N 457 SER CA CB sing N N 458 SER CA HA sing N N 459 SER C O doub N N 460 SER C OXT sing N N 461 SER CB OG sing N N 462 SER CB HB2 sing N N 463 SER CB HB3 sing N N 464 SER OG HG sing N N 465 SER OXT HXT sing N N 466 THR N CA sing N N 467 THR N H sing N N 468 THR N H2 sing N N 469 THR CA C sing N N 470 THR CA CB sing N N 471 THR CA HA sing N N 472 THR C O doub N N 473 THR C OXT sing N N 474 THR CB OG1 sing N N 475 THR CB CG2 sing N N 476 THR CB HB sing N N 477 THR OG1 HG1 sing N N 478 THR CG2 HG21 sing N N 479 THR CG2 HG22 sing N N 480 THR CG2 HG23 sing N N 481 THR OXT HXT sing N N 482 TRP N CA sing N N 483 TRP N H sing N N 484 TRP N H2 sing N N 485 TRP CA C sing N N 486 TRP CA CB sing N N 487 TRP CA HA sing N N 488 TRP C O doub N N 489 TRP C OXT sing N N 490 TRP CB CG sing N N 491 TRP CB HB2 sing N N 492 TRP CB HB3 sing N N 493 TRP CG CD1 doub Y N 494 TRP CG CD2 sing Y N 495 TRP CD1 NE1 sing Y N 496 TRP CD1 HD1 sing N N 497 TRP CD2 CE2 doub Y N 498 TRP CD2 CE3 sing Y N 499 TRP NE1 CE2 sing Y N 500 TRP NE1 HE1 sing N N 501 TRP CE2 CZ2 sing Y N 502 TRP CE3 CZ3 doub Y N 503 TRP CE3 HE3 sing N N 504 TRP CZ2 CH2 doub Y N 505 TRP CZ2 HZ2 sing N N 506 TRP CZ3 CH2 sing Y N 507 TRP CZ3 HZ3 sing N N 508 TRP CH2 HH2 sing N N 509 TRP OXT HXT sing N N 510 TYR N CA sing N N 511 TYR N H sing N N 512 TYR N H2 sing N N 513 TYR CA C sing N N 514 TYR CA CB sing N N 515 TYR CA HA sing N N 516 TYR C O doub N N 517 TYR C OXT sing N N 518 TYR CB CG sing N N 519 TYR CB HB2 sing N N 520 TYR CB HB3 sing N N 521 TYR CG CD1 doub Y N 522 TYR CG CD2 sing Y N 523 TYR CD1 CE1 sing Y N 524 TYR CD1 HD1 sing N N 525 TYR CD2 CE2 doub Y N 526 TYR CD2 HD2 sing N N 527 TYR CE1 CZ doub Y N 528 TYR CE1 HE1 sing N N 529 TYR CE2 CZ sing Y N 530 TYR CE2 HE2 sing N N 531 TYR CZ OH sing N N 532 TYR OH HH sing N N 533 TYR OXT HXT sing N N 534 VAL N CA sing N N 535 VAL N H sing N N 536 VAL N H2 sing N N 537 VAL CA C sing N N 538 VAL CA CB sing N N 539 VAL CA HA sing N N 540 VAL C O doub N N 541 VAL C OXT sing N N 542 VAL CB CG1 sing N N 543 VAL CB CG2 sing N N 544 VAL CB HB sing N N 545 VAL CG1 HG11 sing N N 546 VAL CG1 HG12 sing N N 547 VAL CG1 HG13 sing N N 548 VAL CG2 HG21 sing N N 549 VAL CG2 HG22 sing N N 550 VAL CG2 HG23 sing N N 551 VAL OXT HXT sing N N 552 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VYQ 'b-form double helix' 3VYQ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 10 1_555 0.446 0.085 0.332 -0.076 -12.981 7.739 1 B_DC2:DG10_C B 2 ? C 10 ? 19 1 1 B DA 3 1_555 C DT 9 1_555 -0.471 -0.397 0.091 1.514 -20.107 -0.564 2 B_DA3:DT9_C B 3 ? C 9 ? 20 1 1 B DT 4 1_555 C DA 8 1_555 -0.039 0.060 0.035 1.238 -16.884 2.977 3 B_DT4:DA8_C B 4 ? C 8 ? 20 1 1 B DC 5 1_555 C DG 7 1_555 0.592 -0.114 -0.126 -14.791 -6.430 0.473 4 B_DC5:DG7_C B 5 ? C 7 ? 19 1 1 B 5CM 6 1_555 C DG 6 1_555 0.519 -0.219 0.007 5.592 -0.914 1.110 5 B_5CM6:DG6_C B 6 ? C 6 ? 19 1 1 B DG 7 1_555 C DT 5 1_555 -2.206 -0.536 0.288 6.637 -9.112 -6.782 6 B_DG7:DT5_C B 7 ? C 5 ? 28 1 1 B DG 8 1_555 C DC 4 1_555 -0.082 -0.072 0.359 1.028 -10.778 2.457 7 B_DG8:DC4_C B 8 ? C 4 ? 19 1 1 B DT 9 1_555 C DA 3 1_555 -0.165 -0.127 0.159 1.382 -14.432 -2.821 8 B_DT9:DA3_C B 9 ? C 3 ? 20 1 1 B DG 10 1_555 C DC 2 1_555 0.102 -0.155 0.129 8.932 -8.529 0.731 9 B_DG10:DC2_C B 10 ? C 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 10 1_555 B DA 3 1_555 C DT 9 1_555 -0.632 0.430 3.401 0.950 4.356 31.591 -0.046 1.331 3.408 7.952 -1.733 31.896 1 BB_DC2DA3:DT9DG10_CC B 2 ? C 10 ? B 3 ? C 9 ? 1 B DA 3 1_555 C DT 9 1_555 B DT 4 1_555 C DA 8 1_555 0.372 -0.662 3.266 -0.501 0.690 32.712 -1.294 -0.747 3.246 1.224 0.890 32.723 2 BB_DA3DT4:DA8DT9_CC B 3 ? C 9 ? B 4 ? C 8 ? 1 B DT 4 1_555 C DA 8 1_555 B DC 5 1_555 C DG 7 1_555 0.828 -0.083 3.735 4.719 -0.607 42.891 -0.044 -0.591 3.802 -0.827 -6.429 43.142 3 BB_DT4DC5:DG7DA8_CC B 4 ? C 8 ? B 5 ? C 7 ? 1 B DC 5 1_555 C DG 7 1_555 B 5CM 6 1_555 C DG 6 1_555 -0.344 0.251 3.003 0.836 5.692 21.021 -1.407 1.215 2.951 15.237 -2.239 21.786 4 BB_DC55CM6:DG6DG7_CC B 5 ? C 7 ? B 6 ? C 6 ? 1 B 5CM 6 1_555 C DG 6 1_555 B DG 7 1_555 C DT 5 1_555 -0.474 0.430 3.417 -7.302 -4.662 31.743 1.600 -0.477 3.346 -8.331 13.049 32.875 5 BB_5CM6DG7:DT5DG6_CC B 6 ? C 6 ? B 7 ? C 5 ? 1 B DG 7 1_555 C DT 5 1_555 B DG 8 1_555 C DC 4 1_555 -0.022 0.258 3.566 -3.260 -3.935 50.386 0.604 -0.225 3.533 -4.608 3.817 50.628 6 BB_DG7DG8:DC4DT5_CC B 7 ? C 5 ? B 8 ? C 4 ? 1 B DG 8 1_555 C DC 4 1_555 B DT 9 1_555 C DA 3 1_555 -0.356 -0.609 3.259 0.624 0.099 27.587 -1.301 0.898 3.248 0.207 -1.309 27.594 7 BB_DG8DT9:DA3DC4_CC B 8 ? C 4 ? B 9 ? C 3 ? 1 B DT 9 1_555 C DA 3 1_555 B DG 10 1_555 C DC 2 1_555 0.967 1.089 3.397 3.501 4.016 35.462 1.153 -1.033 3.571 6.547 -5.708 35.847 8 BB_DT9DG10:DC2DA3_CC B 9 ? C 3 ? B 10 ? C 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 1,2-ETHANEDIOL EDO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3VXV _pdbx_initial_refinement_model.details 'PDB ENTRY 3VXV' #