HEADER HYDROLASE 03-OCT-12 3VYV TITLE CRYSTAL STRUCTURE OF SUBTILISIN NAT AT 1.36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN NAT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 107-381; COMPND 5 SYNONYM: NATTOKINASE; COMPND 6 EC: 3.4.21.62 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. NATTO; SOURCE 3 ORGANISM_TAXID: 86029; SOURCE 4 STRAIN: SUBSP. NATTO KEYWDS BACILLUS SUBTILIS SUBSP. NATTO, SERINE PROTEASE, O-BENZYLSULFONYL- KEYWDS 2 SERINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.USHIJIMA,N.FUCHITA,T.KAJIWARA,H.MOTOSHIMA,G.UENO,K.WATANABE REVDAT 2 08-NOV-23 3VYV 1 REMARK LINK REVDAT 1 09-OCT-13 3VYV 0 JRNL AUTH K.WATANABE JRNL TITL CRYSTAL STRUCTURE OF SUBTILISIN NAT AT 1.36 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 106057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5589 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 389 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4016 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2510 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5488 ; 1.519 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6192 ; 3.300 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 5.825 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;39.992 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;11.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2710 ; 1.909 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4332 ; 2.664 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 4.313 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1156 ; 5.775 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6526 ; 2.060 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1SCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 5% ETHANOL, 0.2M AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.84100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.72450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.72450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.84100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 249 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 30.97 73.04 REMARK 500 ASP A 32 -149.16 -167.62 REMARK 500 ASP A 36 99.79 -69.68 REMARK 500 SER A 63 -22.48 98.51 REMARK 500 ALA A 73 25.08 -150.02 REMARK 500 ASN A 77 -157.14 -161.54 REMARK 500 VAL A 81 -165.68 -119.06 REMARK 500 SER A 159 77.75 -150.00 REMARK 500 ASN A 259 121.74 -38.02 REMARK 500 ASP B 32 -149.12 -167.34 REMARK 500 SER B 63 -19.72 96.34 REMARK 500 ALA B 73 24.64 -150.13 REMARK 500 ASN B 77 -153.87 -158.72 REMARK 500 VAL B 81 -165.09 -119.66 REMARK 500 SER B 159 74.92 -152.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 2 OE1 REMARK 620 2 ASP A 41 OD1 152.2 REMARK 620 3 ASP A 41 OD2 155.4 52.1 REMARK 620 4 LEU A 75 O 77.0 86.8 111.0 REMARK 620 5 ASN A 77 OD1 79.1 77.6 123.5 87.0 REMARK 620 6 ILE A 79 O 90.5 99.8 85.2 162.9 79.1 REMARK 620 7 VAL A 81 O 79.6 123.2 77.3 89.7 158.7 99.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 169 O REMARK 620 2 TYR A 171 O 74.5 REMARK 620 3 THR A 174 O 114.8 79.2 REMARK 620 4 ASP A 197 OD2 127.7 146.9 69.3 REMARK 620 5 HOH A 470 O 91.4 72.0 134.0 124.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 2 OE1 REMARK 620 2 ASP B 41 OD1 152.5 REMARK 620 3 ASP B 41 OD2 154.8 52.4 REMARK 620 4 LEU B 75 O 78.1 86.5 109.4 REMARK 620 5 ASN B 77 OD1 77.9 78.9 125.5 87.5 REMARK 620 6 ILE B 79 O 89.7 99.5 86.9 162.6 77.8 REMARK 620 7 VAL B 81 O 79.4 123.6 76.6 89.9 157.2 100.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 169 O REMARK 620 2 TYR B 171 O 74.4 REMARK 620 3 THR B 174 O 110.2 76.0 REMARK 620 4 ASP B 197 OD2 126.5 143.1 68.3 REMARK 620 5 HOH B 481 O 95.6 74.6 133.5 124.9 REMARK 620 6 HOH B 491 O 153.4 108.8 96.0 67.1 61.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 DBREF 3VYV A 1 275 UNP P35835 SUBN_BACNA 107 381 DBREF 3VYV B 1 275 UNP P35835 SUBN_BACNA 107 381 SEQRES 1 A 275 ALA GLN SER VAL PRO TYR GLY ILE SER GLN ILE LYS ALA SEQRES 2 A 275 PRO ALA LEU HIS SER GLN GLY TYR THR GLY SER ASN VAL SEQRES 3 A 275 LYS VAL ALA VAL ILE ASP SER GLY ILE ASP SER SER HIS SEQRES 4 A 275 PRO ASP LEU ASN VAL ARG GLY GLY ALA SER PHE VAL PRO SEQRES 5 A 275 SER GLU THR ASN PRO TYR GLN ASP GLY SER SER HIS GLY SEQRES 6 A 275 THR HIS VAL ALA GLY THR ILE ALA ALA LEU ASN ASN SER SEQRES 7 A 275 ILE GLY VAL LEU GLY VAL ALA PRO SER ALA SER LEU TYR SEQRES 8 A 275 ALA VAL LYS VAL LEU ASP SER THR GLY SER GLY GLN TYR SEQRES 9 A 275 SER TRP ILE ILE ASN GLY ILE GLU TRP ALA ILE SER ASN SEQRES 10 A 275 ASN MET ASP VAL ILE ASN MET SER LEU GLY GLY PRO THR SEQRES 11 A 275 GLY SER THR ALA LEU LYS THR VAL VAL ASP LYS ALA VAL SEQRES 12 A 275 SER SER GLY ILE VAL VAL ALA ALA ALA ALA GLY ASN GLU SEQRES 13 A 275 GLY SER SER GLY SER THR SER THR VAL GLY TYR PRO ALA SEQRES 14 A 275 LYS TYR PRO SER THR ILE ALA VAL GLY ALA VAL ASN SER SEQRES 15 A 275 SER ASN GLN ARG ALA SER PHE SER SER VAL GLY SER GLU SEQRES 16 A 275 LEU ASP VAL MET ALA PRO GLY VAL SER ILE GLN SER THR SEQRES 17 A 275 LEU PRO GLY GLY THR TYR GLY ALA TYR ASN GLY THR SEB SEQRES 18 A 275 MET ALA THR PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE SEQRES 19 A 275 LEU SER LYS HIS PRO THR TRP THR ASN ALA GLN VAL ARG SEQRES 20 A 275 ASP ARG LEU GLU SER THR ALA THR TYR LEU GLY ASN SER SEQRES 21 A 275 PHE TYR TYR GLY LYS GLY LEU ILE ASN VAL GLN ALA ALA SEQRES 22 A 275 ALA GLN SEQRES 1 B 275 ALA GLN SER VAL PRO TYR GLY ILE SER GLN ILE LYS ALA SEQRES 2 B 275 PRO ALA LEU HIS SER GLN GLY TYR THR GLY SER ASN VAL SEQRES 3 B 275 LYS VAL ALA VAL ILE ASP SER GLY ILE ASP SER SER HIS SEQRES 4 B 275 PRO ASP LEU ASN VAL ARG GLY GLY ALA SER PHE VAL PRO SEQRES 5 B 275 SER GLU THR ASN PRO TYR GLN ASP GLY SER SER HIS GLY SEQRES 6 B 275 THR HIS VAL ALA GLY THR ILE ALA ALA LEU ASN ASN SER SEQRES 7 B 275 ILE GLY VAL LEU GLY VAL ALA PRO SER ALA SER LEU TYR SEQRES 8 B 275 ALA VAL LYS VAL LEU ASP SER THR GLY SER GLY GLN TYR SEQRES 9 B 275 SER TRP ILE ILE ASN GLY ILE GLU TRP ALA ILE SER ASN SEQRES 10 B 275 ASN MET ASP VAL ILE ASN MET SER LEU GLY GLY PRO THR SEQRES 11 B 275 GLY SER THR ALA LEU LYS THR VAL VAL ASP LYS ALA VAL SEQRES 12 B 275 SER SER GLY ILE VAL VAL ALA ALA ALA ALA GLY ASN GLU SEQRES 13 B 275 GLY SER SER GLY SER THR SER THR VAL GLY TYR PRO ALA SEQRES 14 B 275 LYS TYR PRO SER THR ILE ALA VAL GLY ALA VAL ASN SER SEQRES 15 B 275 SER ASN GLN ARG ALA SER PHE SER SER VAL GLY SER GLU SEQRES 16 B 275 LEU ASP VAL MET ALA PRO GLY VAL SER ILE GLN SER THR SEQRES 17 B 275 LEU PRO GLY GLY THR TYR GLY ALA TYR ASN GLY THR SEB SEQRES 18 B 275 MET ALA THR PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE SEQRES 19 B 275 LEU SER LYS HIS PRO THR TRP THR ASN ALA GLN VAL ARG SEQRES 20 B 275 ASP ARG LEU GLU SER THR ALA THR TYR LEU GLY ASN SER SEQRES 21 B 275 PHE TYR TYR GLY LYS GLY LEU ILE ASN VAL GLN ALA ALA SEQRES 22 B 275 ALA GLN MODRES 3VYV SEB A 221 SER O-BENZYLSULFONYL-SERINE MODRES 3VYV SEB B 221 SER O-BENZYLSULFONYL-SERINE HET SEB A 221 16 HET SEB B 221 16 HET GOL A 301 6 HET GOL A 302 6 HET CA A 303 1 HET CA A 304 1 HET CA B 301 1 HET CA B 302 1 HETNAM SEB O-BENZYLSULFONYL-SERINE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEB 2(C10 H13 N O5 S) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *408(H2 O) HELIX 1 1 PRO A 5 ILE A 11 1 7 HELIX 2 2 LYS A 12 GLY A 20 1 9 HELIX 3 3 SER A 63 ALA A 74 1 12 HELIX 4 4 GLN A 103 ASN A 117 1 15 HELIX 5 5 SER A 132 SER A 145 1 14 HELIX 6 6 GLY A 219 HIS A 238 1 20 HELIX 7 7 THR A 242 THR A 253 1 12 HELIX 8 8 ASN A 259 GLY A 264 1 6 HELIX 9 9 ASN A 269 ALA A 274 1 6 HELIX 10 10 PRO B 5 ILE B 11 1 7 HELIX 11 11 LYS B 12 GLY B 20 1 9 HELIX 12 12 SER B 63 ALA B 74 1 12 HELIX 13 13 GLN B 103 ASN B 117 1 15 HELIX 14 14 SER B 132 SER B 145 1 14 HELIX 15 15 GLY B 219 HIS B 238 1 20 HELIX 16 16 THR B 242 THR B 253 1 12 HELIX 17 17 ASN B 259 GLY B 264 1 6 HELIX 18 18 ASN B 269 ALA B 274 1 6 SHEET 1 A 7 VAL A 44 SER A 49 0 SHEET 2 A 7 SER A 89 LYS A 94 1 O LEU A 90 N ARG A 45 SHEET 3 A 7 LYS A 27 ASP A 32 1 N VAL A 28 O SER A 89 SHEET 4 A 7 VAL A 121 MET A 124 1 O VAL A 121 N ALA A 29 SHEET 5 A 7 VAL A 148 ALA A 152 1 O VAL A 148 N ILE A 122 SHEET 6 A 7 ILE A 175 VAL A 180 1 O ILE A 175 N ALA A 151 SHEET 7 A 7 VAL A 198 PRO A 201 1 O VAL A 198 N GLY A 178 SHEET 1 B 2 ILE A 205 LEU A 209 0 SHEET 2 B 2 THR A 213 TYR A 217 -1 O TYR A 217 N ILE A 205 SHEET 1 C 7 VAL B 44 SER B 49 0 SHEET 2 C 7 SER B 89 LYS B 94 1 O LEU B 90 N ARG B 45 SHEET 3 C 7 LYS B 27 ASP B 32 1 N VAL B 28 O SER B 89 SHEET 4 C 7 VAL B 121 MET B 124 1 O VAL B 121 N ALA B 29 SHEET 5 C 7 VAL B 148 ALA B 152 1 O VAL B 148 N ILE B 122 SHEET 6 C 7 ILE B 175 VAL B 180 1 O ILE B 175 N ALA B 151 SHEET 7 C 7 VAL B 198 PRO B 201 1 O VAL B 198 N GLY B 178 SHEET 1 D 2 ILE B 205 LEU B 209 0 SHEET 2 D 2 THR B 213 TYR B 217 -1 O TYR B 217 N ILE B 205 LINK C THR A 220 N SEB A 221 1555 1555 1.37 LINK C SEB A 221 N MET A 222 1555 1555 1.33 LINK C THR B 220 N SEB B 221 1555 1555 1.37 LINK C SEB B 221 N MET B 222 1555 1555 1.34 LINK OE1 GLN A 2 CA CA A 303 1555 1555 2.37 LINK OD1 ASP A 41 CA CA A 303 1555 1555 2.41 LINK OD2 ASP A 41 CA CA A 303 1555 1555 2.54 LINK O LEU A 75 CA CA A 303 1555 1555 2.33 LINK OD1 ASN A 77 CA CA A 303 1555 1555 2.39 LINK O ILE A 79 CA CA A 303 1555 1555 2.35 LINK O VAL A 81 CA CA A 303 1555 1555 2.36 LINK O ALA A 169 CA CA A 304 1555 1555 2.76 LINK O TYR A 171 CA CA A 304 1555 1555 3.00 LINK O THR A 174 CA CA A 304 1555 1555 2.72 LINK OD2 ASP A 197 CA CA A 304 1555 1555 2.98 LINK CA CA A 304 O HOH A 470 1555 1555 2.97 LINK OE1 GLN B 2 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 41 CA CA B 301 1555 1555 2.38 LINK OD2 ASP B 41 CA CA B 301 1555 1555 2.50 LINK O LEU B 75 CA CA B 301 1555 1555 2.32 LINK OD1 ASN B 77 CA CA B 301 1555 1555 2.37 LINK O ILE B 79 CA CA B 301 1555 1555 2.34 LINK O VAL B 81 CA CA B 301 1555 1555 2.33 LINK O ALA B 169 CA CA B 302 1555 1555 2.78 LINK O TYR B 171 CA CA B 302 1555 1555 3.06 LINK O THR B 174 CA CA B 302 1555 1555 2.81 LINK OD2 ASP B 197 CA CA B 302 1555 1555 2.92 LINK CA CA B 302 O HOH B 481 1555 1555 2.89 LINK CA CA B 302 O HOH B 491 1555 1555 3.13 CISPEP 1 TYR A 167 PRO A 168 0 10.00 CISPEP 2 TYR B 167 PRO B 168 0 8.30 SITE 1 AC1 8 ASN A 118 MET A 119 SER A 145 GLY A 146 SITE 2 AC1 8 HOH A 443 HOH A 564 HOH A 603 HOH A 609 SITE 1 AC2 11 ALA A 48 SER A 49 THR A 55 THR A 253 SITE 2 AC2 11 ALA A 254 THR A 255 ALA A 272 HOH A 451 SITE 3 AC2 11 HOH A 562 HOH A 563 HOH A 565 SITE 1 AC3 6 GLN A 2 ASP A 41 LEU A 75 ASN A 77 SITE 2 AC3 6 ILE A 79 VAL A 81 SITE 1 AC4 6 ALA A 169 TYR A 171 THR A 174 GLU A 195 SITE 2 AC4 6 ASP A 197 HOH A 470 SITE 1 AC5 6 GLN B 2 ASP B 41 LEU B 75 ASN B 77 SITE 2 AC5 6 ILE B 79 VAL B 81 SITE 1 AC6 6 ALA B 169 TYR B 171 THR B 174 GLU B 195 SITE 2 AC6 6 ASP B 197 HOH B 481 CRYST1 73.682 80.039 87.449 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011435 0.00000