HEADER SIGNALING PROTEIN 19-OCT-12 3W05 TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA DWARF14 (D14) IN COMPLEX WITH PMSF COMPND MOL_ID: 1; COMPND 2 MOLECULE: DWARF 88 ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 55-318; COMPND 5 SYNONYM: HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED, COMPND 6 OS03G0203200 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: D88, LOC_OS03G10620, OS03G0203200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET47B KEYWDS STRIGOLACTONE SIGNALING, ALPHA/BETA HYDROLASE, STRIGOLACTONE KEYWDS 2 HYDROLYSIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KAGIYAMA,Y.HIRANO,T.MORI,S.Y.KIM,J.KYOZUKA,Y.SETO,S.YAMAGUCHI, AUTHOR 2 T.HAKOSHIMA REVDAT 4 30-OCT-24 3W05 1 REMARK REVDAT 3 08-NOV-23 3W05 1 REMARK SEQADV LINK REVDAT 2 06-FEB-13 3W05 1 JRNL REVDAT 1 23-JAN-13 3W05 0 JRNL AUTH M.KAGIYAMA,Y.HIRANO,T.MORI,S.Y.KIM,J.KYOZUKA,Y.SETO, JRNL AUTH 2 S.YAMAGUCHI,T.HAKOSHIMA JRNL TITL STRUCTURES OF D14 AND D14L IN THE STRIGOLACTONE AND KARRIKIN JRNL TITL 2 SIGNALING PATHWAYS JRNL REF GENES CELLS V. 18 147 2013 JRNL REFN ISSN 1356-9597 JRNL PMID 23301669 JRNL DOI 10.1111/GTC.12025 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 66026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4385 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5994 ; 1.481 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 5.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;26.255 ;22.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;14.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;19.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3378 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2737 ; 1.789 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4445 ; 2.787 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1648 ; 4.334 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 6.452 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5259 14.8312 -18.4063 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0290 REMARK 3 T33: 0.0242 T12: 0.0098 REMARK 3 T13: -0.0033 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4400 L22: 0.4250 REMARK 3 L33: 0.4780 L12: 0.1027 REMARK 3 L13: -0.0887 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.0411 S13: 0.0312 REMARK 3 S21: -0.0111 S22: 0.0404 S23: -0.0011 REMARK 3 S31: 0.0119 S32: 0.0104 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 318 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1848 -8.9294 8.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.0101 REMARK 3 T33: 0.0034 T12: 0.0086 REMARK 3 T13: -0.0048 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.2883 L22: 0.6649 REMARK 3 L33: 0.5155 L12: -0.0782 REMARK 3 L13: 0.0654 L23: -0.1679 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: 0.0297 S13: 0.0000 REMARK 3 S21: -0.0998 S22: -0.0261 S23: 0.0025 REMARK 3 S31: 0.0949 S32: 0.0042 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 728 REMARK 3 RESIDUE RANGE : B 501 B 703 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8108 3.6230 -7.2421 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0165 REMARK 3 T33: 0.0189 T12: 0.0146 REMARK 3 T13: 0.0022 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.0744 L22: 0.1859 REMARK 3 L33: 0.4014 L12: 0.0946 REMARK 3 L13: -0.0483 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0097 S13: 0.0019 REMARK 3 S21: -0.0291 S22: 0.0177 S23: -0.0056 REMARK 3 S31: 0.0581 S32: 0.0076 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1910 0.7032 -4.6171 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0817 REMARK 3 T33: 0.0396 T12: 0.0343 REMARK 3 T13: 0.0054 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.7912 L22: 0.1299 REMARK 3 L33: 0.1169 L12: 0.0490 REMARK 3 L13: 0.0061 L23: 0.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0189 S13: 0.0216 REMARK 3 S21: 0.0501 S22: 0.0294 S23: -0.0122 REMARK 3 S31: 0.0458 S32: 0.0415 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 405 REMARK 3 RESIDUE RANGE : B 402 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9755 2.2993 -7.3628 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.0554 REMARK 3 T33: 0.0527 T12: 0.0189 REMARK 3 T13: -0.0048 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.0926 L22: 0.6239 REMARK 3 L33: 0.4923 L12: 0.1661 REMARK 3 L13: -0.1523 L23: -0.5117 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.0026 S13: 0.0281 REMARK 3 S21: 0.0009 S22: 0.0470 S23: 0.1470 REMARK 3 S31: 0.0416 S32: 0.0099 S33: -0.1012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69842 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLREP REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1WOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG6000, 5% MPD, 0.1M NA-HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.44200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.25900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.44200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.25900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 PRO A 54 REMARK 465 GLY B 53 REMARK 465 PRO B 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 317 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 119 49.75 -92.09 REMARK 500 SER A 147 -115.04 56.06 REMARK 500 ARG A 175 123.29 -174.03 REMARK 500 ASP A 181 39.16 33.52 REMARK 500 ASN A 201 80.35 -161.01 REMARK 500 ALA A 303 53.78 -145.84 REMARK 500 SER B 147 -118.36 51.99 REMARK 500 ARG B 175 127.67 -170.98 REMARK 500 SER B 180 -128.89 50.72 REMARK 500 ASN B 201 83.98 -153.21 REMARK 500 ALA B 303 55.90 -142.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W04 RELATED DB: PDB REMARK 900 RELATED ID: 3W06 RELATED DB: PDB DBREF 3W05 A 55 318 UNP Q10QA5 Q10QA5_ORYSJ 55 318 DBREF 3W05 B 55 318 UNP Q10QA5 Q10QA5_ORYSJ 55 318 SEQADV 3W05 GLY A 53 UNP Q10QA5 EXPRESSION TAG SEQADV 3W05 PRO A 54 UNP Q10QA5 EXPRESSION TAG SEQADV 3W05 GLY B 53 UNP Q10QA5 EXPRESSION TAG SEQADV 3W05 PRO B 54 UNP Q10QA5 EXPRESSION TAG SEQRES 1 A 266 GLY PRO LYS LEU LEU GLN ILE LEU ASN VAL ARG VAL VAL SEQRES 2 A 266 GLY SER GLY GLU ARG VAL VAL VAL LEU SER HIS GLY PHE SEQRES 3 A 266 GLY THR ASP GLN SER ALA TRP SER ARG VAL LEU PRO TYR SEQRES 4 A 266 LEU THR ARG ASP HIS ARG VAL VAL LEU TYR ASP LEU VAL SEQRES 5 A 266 CYS ALA GLY SER VAL ASN PRO ASP HIS PHE ASP PHE ARG SEQRES 6 A 266 ARG TYR ASP ASN LEU ASP ALA TYR VAL ASP ASP LEU LEU SEQRES 7 A 266 ALA ILE LEU ASP ALA LEU ARG ILE PRO ARG CYS ALA PHE SEQRES 8 A 266 VAL GLY HIS SER VAL SER ALA MET ILE GLY ILE LEU ALA SEQRES 9 A 266 SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU VAL LEU SEQRES 10 A 266 ILE GLY ALA SER PRO ARG PHE LEU ASN ASP SER ASP TYR SEQRES 11 A 266 HIS GLY GLY PHE GLU LEU GLU GLU ILE GLN GLN VAL PHE SEQRES 12 A 266 ASP ALA MET GLY ALA ASN TYR SER ALA TRP ALA THR GLY SEQRES 13 A 266 TYR ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO ALA ALA SEQRES 14 A 266 VAL GLN GLU PHE SER ARG THR LEU PHE ASN MET ARG PRO SEQRES 15 A 266 ASP ILE SER LEU HIS VAL CYS GLN THR VAL PHE LYS THR SEQRES 16 A 266 ASP LEU ARG GLY VAL LEU GLY MET VAL ARG ALA PRO CYS SEQRES 17 A 266 VAL VAL VAL GLN THR THR ARG ASP VAL SER VAL PRO ALA SEQRES 18 A 266 SER VAL ALA ALA TYR LEU LYS ALA HIS LEU GLY GLY ARG SEQRES 19 A 266 THR THR VAL GLU PHE LEU GLN THR GLU GLY HIS LEU PRO SEQRES 20 A 266 HIS LEU SER ALA PRO SER LEU LEU ALA GLN VAL LEU ARG SEQRES 21 A 266 ARG ALA LEU ALA ARG TYR SEQRES 1 B 266 GLY PRO LYS LEU LEU GLN ILE LEU ASN VAL ARG VAL VAL SEQRES 2 B 266 GLY SER GLY GLU ARG VAL VAL VAL LEU SER HIS GLY PHE SEQRES 3 B 266 GLY THR ASP GLN SER ALA TRP SER ARG VAL LEU PRO TYR SEQRES 4 B 266 LEU THR ARG ASP HIS ARG VAL VAL LEU TYR ASP LEU VAL SEQRES 5 B 266 CYS ALA GLY SER VAL ASN PRO ASP HIS PHE ASP PHE ARG SEQRES 6 B 266 ARG TYR ASP ASN LEU ASP ALA TYR VAL ASP ASP LEU LEU SEQRES 7 B 266 ALA ILE LEU ASP ALA LEU ARG ILE PRO ARG CYS ALA PHE SEQRES 8 B 266 VAL GLY HIS SER VAL SER ALA MET ILE GLY ILE LEU ALA SEQRES 9 B 266 SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU VAL LEU SEQRES 10 B 266 ILE GLY ALA SER PRO ARG PHE LEU ASN ASP SER ASP TYR SEQRES 11 B 266 HIS GLY GLY PHE GLU LEU GLU GLU ILE GLN GLN VAL PHE SEQRES 12 B 266 ASP ALA MET GLY ALA ASN TYR SER ALA TRP ALA THR GLY SEQRES 13 B 266 TYR ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO ALA ALA SEQRES 14 B 266 VAL GLN GLU PHE SER ARG THR LEU PHE ASN MET ARG PRO SEQRES 15 B 266 ASP ILE SER LEU HIS VAL CYS GLN THR VAL PHE LYS THR SEQRES 16 B 266 ASP LEU ARG GLY VAL LEU GLY MET VAL ARG ALA PRO CYS SEQRES 17 B 266 VAL VAL VAL GLN THR THR ARG ASP VAL SER VAL PRO ALA SEQRES 18 B 266 SER VAL ALA ALA TYR LEU LYS ALA HIS LEU GLY GLY ARG SEQRES 19 B 266 THR THR VAL GLU PHE LEU GLN THR GLU GLY HIS LEU PRO SEQRES 20 B 266 HIS LEU SER ALA PRO SER LEU LEU ALA GLN VAL LEU ARG SEQRES 21 B 266 ARG ALA LEU ALA ARG TYR HET PMS A 401 10 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET PMS B 401 10 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HETNAM PMS PHENYLMETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PMS 2(C7 H8 O3 S) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 12 HOH *431(H2 O) HELIX 1 1 LYS A 55 LEU A 60 1 6 HELIX 2 2 ASP A 81 SER A 86 5 6 HELIX 3 3 VAL A 88 LEU A 92 5 5 HELIX 4 4 ASN A 110 PHE A 114 5 5 HELIX 5 5 ARG A 117 ASP A 120 5 4 HELIX 6 6 ASN A 121 LEU A 136 1 16 HELIX 7 7 SER A 147 ARG A 160 1 14 HELIX 8 8 GLU A 187 ASN A 201 1 15 HELIX 9 9 ASN A 201 GLY A 215 1 15 HELIX 10 10 VAL A 218 PHE A 230 1 13 HELIX 11 11 ARG A 233 LYS A 246 1 14 HELIX 12 12 LEU A 249 VAL A 256 5 8 HELIX 13 13 SER A 274 LEU A 283 1 10 HELIX 14 14 LEU A 298 ALA A 303 1 6 HELIX 15 15 ALA A 303 LEU A 315 1 13 HELIX 16 16 LEU B 56 LEU B 60 1 5 HELIX 17 17 ASP B 81 SER B 86 5 6 HELIX 18 18 VAL B 88 LEU B 92 5 5 HELIX 19 19 ASN B 110 PHE B 114 5 5 HELIX 20 20 ARG B 117 ASP B 120 5 4 HELIX 21 21 ASN B 121 LEU B 136 1 16 HELIX 22 22 SER B 147 ARG B 160 1 14 HELIX 23 23 GLU B 187 ASN B 201 1 15 HELIX 24 24 ASN B 201 GLY B 215 1 15 HELIX 25 25 VAL B 218 MET B 232 1 15 HELIX 26 26 ARG B 233 LYS B 246 1 14 HELIX 27 27 LEU B 249 VAL B 256 5 8 HELIX 28 28 SER B 274 LEU B 283 1 10 HELIX 29 29 LEU B 298 ALA B 303 1 6 HELIX 30 30 ALA B 303 LEU B 315 1 13 SHEET 1 A 7 ARG A 63 GLY A 66 0 SHEET 2 A 7 ARG A 97 LEU A 100 -1 O VAL A 98 N VAL A 65 SHEET 3 A 7 VAL A 71 SER A 75 1 N VAL A 72 O ARG A 97 SHEET 4 A 7 CYS A 141 HIS A 146 1 O VAL A 144 N VAL A 73 SHEET 5 A 7 PHE A 164 ILE A 170 1 O ALA A 165 N CYS A 141 SHEET 6 A 7 CYS A 260 GLN A 264 1 O VAL A 261 N LEU A 169 SHEET 7 A 7 THR A 287 PHE A 291 1 O THR A 288 N VAL A 262 SHEET 1 B 7 ARG B 63 GLY B 66 0 SHEET 2 B 7 ARG B 97 LEU B 100 -1 O VAL B 98 N VAL B 65 SHEET 3 B 7 VAL B 71 SER B 75 1 N VAL B 72 O VAL B 99 SHEET 4 B 7 CYS B 141 HIS B 146 1 O VAL B 144 N VAL B 73 SHEET 5 B 7 PHE B 164 ILE B 170 1 O ALA B 165 N CYS B 141 SHEET 6 B 7 CYS B 260 GLN B 264 1 O VAL B 263 N LEU B 169 SHEET 7 B 7 THR B 287 PHE B 291 1 O GLU B 290 N GLN B 264 LINK OG SER A 147 S PMS A 401 1555 1555 1.60 LINK OG SER B 147 S PMS B 401 1555 1555 1.54 SITE 1 AC1 6 PHE A 78 SER A 147 VAL A 148 PHE A 176 SITE 2 AC1 6 VAL A 244 PHE A 245 SITE 1 AC2 4 TYR A 182 HIS A 183 SER A 274 VAL A 275 SITE 1 AC3 4 PHE A 186 TYR A 209 SER A 270 HOH A 657 SITE 1 AC4 5 ARG A 97 LEU A 136 HOH A 610 HOH A 655 SITE 2 AC4 5 ARG B 94 SITE 1 AC5 8 MET A 198 GLY A 199 ASN A 201 TYR A 202 SITE 2 AC5 8 PRO A 234 HOH A 538 PRO B 90 TYR B 91 SITE 1 AC6 8 PHE B 78 SER B 147 VAL B 148 MET B 151 SITE 2 AC6 8 PHE B 176 VAL B 244 PHE B 245 HIS B 297 SITE 1 AC7 6 ASP B 181 TYR B 182 HIS B 183 SER B 274 SITE 2 AC7 6 VAL B 275 HOH B 574 SITE 1 AC8 5 ASP B 120 HIS B 239 GLN B 242 THR B 243 SITE 2 AC8 5 LYS B 246 SITE 1 AC9 6 SER A 203 TYR B 91 SER B 305 GLN B 309 SITE 2 AC9 6 HOH B 517 HOH B 625 CRYST1 48.300 88.518 118.884 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008412 0.00000