HEADER LYASE 24-OCT-12 3W08 TITLE CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOXIME DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS CHLORORAPHIS; SOURCE 3 ORGANISM_TAXID: 587753; SOURCE 4 GENE: OXDA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,J.NOMURA,Y.HASHIMOTO,K.I.OINUMA,K.WADA,A.HISHIKI,K.HARA, AUTHOR 2 M.KOBAYASHI REVDAT 4 08-NOV-23 3W08 1 REMARK REVDAT 3 24-AUG-22 3W08 1 JRNL REMARK LINK REVDAT 2 27-FEB-13 3W08 1 AUTHOR TITLE REVDAT 1 20-FEB-13 3W08 0 JRNL AUTH J.NOMURA,H.HASHIMOTO,T.OHTA,Y.HASHIMOTO,K.WADA,Y.NARUTA, JRNL AUTH 2 K.OINUMA,M.KOBAYASHI JRNL TITL CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE AND ITS CATALYTIC JRNL TITL 2 MECHANISM INVOLVED IN CARBON-NITROGEN TRIPLE-BOND SYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 2810 2013 JRNL REFN ESSN 1091-6490 JRNL PMID 23382199 JRNL DOI 10.1073/PNAS.1200338110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 77395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5896 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3990 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8034 ; 2.462 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9594 ; 3.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;32.951 ;23.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 926 ;13.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;17.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6704 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1326 ; 0.032 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 351 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 601 A 943 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3133 0.2915 26.4988 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0564 REMARK 3 T33: 0.0630 T12: 0.0064 REMARK 3 T13: 0.0066 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.3230 L22: 0.2768 REMARK 3 L33: 0.4098 L12: -0.0689 REMARK 3 L13: -0.2269 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: -0.0254 S13: -0.0568 REMARK 3 S21: 0.0152 S22: -0.0446 S23: 0.0431 REMARK 3 S31: 0.0006 S32: 0.0989 S33: 0.0966 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 351 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 RESIDUE RANGE : B 601 B 955 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0729 38.0902 20.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0473 REMARK 3 T33: 0.0386 T12: -0.0281 REMARK 3 T13: -0.0086 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1174 L22: 0.3168 REMARK 3 L33: 0.5470 L12: -0.0572 REMARK 3 L13: 0.0030 L23: 0.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0409 S13: -0.0192 REMARK 3 S21: -0.0437 S22: -0.0015 S23: -0.0043 REMARK 3 S31: -0.1027 S32: 0.0553 S33: 0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3A16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.47300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.22900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.47300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.22900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 352 REMARK 465 THR B 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 159 CG MET A 159 SD -0.180 REMARK 500 MET B 159 CG MET B 159 SD -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 187 CG - SD - CE ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MET B 187 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG B 205 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 191 -161.08 64.23 REMARK 500 ASP A 275 59.60 -90.27 REMARK 500 ASN B 191 -163.00 65.22 REMARK 500 ASP B 275 55.00 -91.01 REMARK 500 LYS B 314 -52.28 -120.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 299 NE2 REMARK 620 2 HEM A 501 NA 93.5 REMARK 620 3 HEM A 501 NB 96.2 87.8 REMARK 620 4 HEM A 501 NC 88.9 177.5 92.2 REMARK 620 5 HEM A 501 ND 87.6 89.8 175.6 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 299 NE2 REMARK 620 2 HEM B 501 NA 94.0 REMARK 620 3 HEM B 501 NB 93.9 88.2 REMARK 620 4 HEM B 501 NC 88.3 177.6 91.8 REMARK 620 5 HEM B 501 ND 88.2 89.6 177.1 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 DBREF 3W08 A 1 352 UNP Q7WSJ4 Q7WSJ4_9PSED 1 352 DBREF 3W08 B 1 352 UNP Q7WSJ4 Q7WSJ4_9PSED 1 352 SEQRES 1 A 352 MET GLU SER ALA ILE ASP THR HIS LEU LYS CYS PRO ARG SEQRES 2 A 352 THR LEU SER ARG ARG VAL PRO GLU GLU TYR GLN PRO PRO SEQRES 3 A 352 PHE PRO MET TRP VAL ALA ARG ALA ASP GLU GLN LEU GLN SEQRES 4 A 352 GLN VAL VAL MET GLY TYR LEU GLY VAL GLN TYR ARG GLY SEQRES 5 A 352 GLU ALA GLN ARG GLU ALA ALA LEU GLN ALA MET ARG HIS SEQRES 6 A 352 ILE VAL SER SER PHE SER LEU PRO ASP GLY PRO GLN THR SEQRES 7 A 352 HIS ASP LEU THR HIS HIS THR ASP SER SER GLY PHE ASP SEQRES 8 A 352 ASN LEU MET VAL VAL GLY TYR TRP LYS ASP PRO ALA ALA SEQRES 9 A 352 HIS CYS ARG TRP LEU ARG SER ALA GLU VAL ASN ASP TRP SEQRES 10 A 352 TRP THR SER GLN ASP ARG LEU GLY GLU GLY LEU GLY TYR SEQRES 11 A 352 PHE ARG GLU ILE SER ALA PRO ARG ALA GLU GLN PHE GLU SEQRES 12 A 352 THR LEU TYR ALA PHE GLN ASP ASN LEU PRO GLY VAL GLY SEQRES 13 A 352 ALA VAL MET ASP SER THR SER GLY GLU ILE GLU GLU HIS SEQRES 14 A 352 GLY TYR TRP GLY SER MET ARG ASP ARG PHE PRO ILE SER SEQRES 15 A 352 GLN THR ASP TRP MET LYS PRO THR ASN GLU LEU GLN VAL SEQRES 16 A 352 VAL ALA GLY ASP PRO ALA LYS GLY GLY ARG VAL VAL ILE SEQRES 17 A 352 MET GLY HIS ASP ASN ILE ALA LEU ILE ARG SER GLY GLN SEQRES 18 A 352 ASP TRP ALA ASP ALA GLU ALA GLU GLU ARG SER LEU TYR SEQRES 19 A 352 LEU ASP GLU ILE LEU PRO THR LEU GLN ASP GLY MET ASP SEQRES 20 A 352 PHE LEU ARG ASP ASN GLY GLN PRO LEU GLY CYS TYR SER SEQRES 21 A 352 ASN ARG PHE VAL ARG ASN ILE ASP LEU ASP GLY ASN PHE SEQRES 22 A 352 LEU ASP VAL SER TYR ASN ILE GLY HIS TRP ARG SER LEU SEQRES 23 A 352 GLU LYS LEU GLU ARG TRP ALA GLU SER HIS PRO THR HIS SEQRES 24 A 352 LEU ARG ILE PHE VAL THR PHE PHE ARG VAL ALA ALA GLY SEQRES 25 A 352 LEU LYS LYS LEU ARG LEU TYR HIS GLU VAL SER VAL SER SEQRES 26 A 352 ASP ALA LYS SER GLN VAL PHE GLU TYR ILE ASN CYS HIS SEQRES 27 A 352 PRO HIS THR GLY MET LEU ARG ASP ALA VAL VAL ALA PRO SEQRES 28 A 352 THR SEQRES 1 B 352 MET GLU SER ALA ILE ASP THR HIS LEU LYS CYS PRO ARG SEQRES 2 B 352 THR LEU SER ARG ARG VAL PRO GLU GLU TYR GLN PRO PRO SEQRES 3 B 352 PHE PRO MET TRP VAL ALA ARG ALA ASP GLU GLN LEU GLN SEQRES 4 B 352 GLN VAL VAL MET GLY TYR LEU GLY VAL GLN TYR ARG GLY SEQRES 5 B 352 GLU ALA GLN ARG GLU ALA ALA LEU GLN ALA MET ARG HIS SEQRES 6 B 352 ILE VAL SER SER PHE SER LEU PRO ASP GLY PRO GLN THR SEQRES 7 B 352 HIS ASP LEU THR HIS HIS THR ASP SER SER GLY PHE ASP SEQRES 8 B 352 ASN LEU MET VAL VAL GLY TYR TRP LYS ASP PRO ALA ALA SEQRES 9 B 352 HIS CYS ARG TRP LEU ARG SER ALA GLU VAL ASN ASP TRP SEQRES 10 B 352 TRP THR SER GLN ASP ARG LEU GLY GLU GLY LEU GLY TYR SEQRES 11 B 352 PHE ARG GLU ILE SER ALA PRO ARG ALA GLU GLN PHE GLU SEQRES 12 B 352 THR LEU TYR ALA PHE GLN ASP ASN LEU PRO GLY VAL GLY SEQRES 13 B 352 ALA VAL MET ASP SER THR SER GLY GLU ILE GLU GLU HIS SEQRES 14 B 352 GLY TYR TRP GLY SER MET ARG ASP ARG PHE PRO ILE SER SEQRES 15 B 352 GLN THR ASP TRP MET LYS PRO THR ASN GLU LEU GLN VAL SEQRES 16 B 352 VAL ALA GLY ASP PRO ALA LYS GLY GLY ARG VAL VAL ILE SEQRES 17 B 352 MET GLY HIS ASP ASN ILE ALA LEU ILE ARG SER GLY GLN SEQRES 18 B 352 ASP TRP ALA ASP ALA GLU ALA GLU GLU ARG SER LEU TYR SEQRES 19 B 352 LEU ASP GLU ILE LEU PRO THR LEU GLN ASP GLY MET ASP SEQRES 20 B 352 PHE LEU ARG ASP ASN GLY GLN PRO LEU GLY CYS TYR SER SEQRES 21 B 352 ASN ARG PHE VAL ARG ASN ILE ASP LEU ASP GLY ASN PHE SEQRES 22 B 352 LEU ASP VAL SER TYR ASN ILE GLY HIS TRP ARG SER LEU SEQRES 23 B 352 GLU LYS LEU GLU ARG TRP ALA GLU SER HIS PRO THR HIS SEQRES 24 B 352 LEU ARG ILE PHE VAL THR PHE PHE ARG VAL ALA ALA GLY SEQRES 25 B 352 LEU LYS LYS LEU ARG LEU TYR HIS GLU VAL SER VAL SER SEQRES 26 B 352 ASP ALA LYS SER GLN VAL PHE GLU TYR ILE ASN CYS HIS SEQRES 27 B 352 PRO HIS THR GLY MET LEU ARG ASP ALA VAL VAL ALA PRO SEQRES 28 B 352 THR HET HEM A 501 43 HET HEM B 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *698(H2 O) HELIX 1 1 ASP A 6 LYS A 10 5 5 HELIX 2 2 GLY A 52 ALA A 54 5 3 HELIX 3 3 GLN A 55 PHE A 70 1 16 HELIX 4 4 ASP A 101 SER A 111 1 11 HELIX 5 5 SER A 111 SER A 120 1 10 HELIX 6 6 GLN A 121 GLU A 126 5 6 HELIX 7 7 ARG A 138 GLU A 140 5 3 HELIX 8 8 PRO A 153 MET A 159 5 7 HELIX 9 9 GLY A 173 PHE A 179 1 7 HELIX 10 10 PRO A 180 THR A 184 5 5 HELIX 11 11 ASP A 199 GLY A 203 5 5 HELIX 12 12 GLU A 227 ILE A 238 1 12 HELIX 13 13 ILE A 238 GLY A 253 1 16 HELIX 14 14 GLN A 254 LEU A 256 5 3 HELIX 15 15 SER A 285 HIS A 296 1 12 HELIX 16 16 HIS A 296 ALA A 310 1 15 HELIX 17 17 ASP A 326 LYS A 328 5 3 HELIX 18 18 THR A 341 ARG A 345 5 5 HELIX 19 19 ASP B 6 LYS B 10 5 5 HELIX 20 20 GLY B 52 ALA B 54 5 3 HELIX 21 21 GLN B 55 PHE B 70 1 16 HELIX 22 22 ASP B 101 SER B 111 1 11 HELIX 23 23 SER B 111 SER B 120 1 10 HELIX 24 24 GLN B 121 GLU B 126 5 6 HELIX 25 25 ARG B 138 GLU B 140 5 3 HELIX 26 26 PRO B 153 MET B 159 5 7 HELIX 27 27 GLY B 173 PHE B 179 1 7 HELIX 28 28 PRO B 180 THR B 184 5 5 HELIX 29 29 ASP B 199 GLY B 203 5 5 HELIX 30 30 GLU B 227 ILE B 238 1 12 HELIX 31 31 ILE B 238 GLY B 253 1 16 HELIX 32 32 GLN B 254 LEU B 256 5 3 HELIX 33 33 SER B 285 HIS B 296 1 12 HELIX 34 34 HIS B 296 ALA B 310 1 15 HELIX 35 35 ASP B 326 LYS B 328 5 3 HELIX 36 36 THR B 341 ARG B 345 5 5 SHEET 1 A 2 ALA A 32 ARG A 33 0 SHEET 2 A 2 SER A 161 THR A 162 -1 O SER A 161 N ARG A 33 SHEET 1 B12 PHE A 142 TYR A 146 0 SHEET 2 B12 ARG A 317 SER A 325 -1 O HIS A 320 N LEU A 145 SHEET 3 B12 ILE A 214 ASP A 222 -1 N ASP A 222 O ARG A 317 SHEET 4 B12 PHE A 273 TRP A 283 -1 O TRP A 283 N ALA A 215 SHEET 5 B12 CYS A 258 ILE A 267 -1 N VAL A 264 O TYR A 278 SHEET 6 B12 THR A 78 THR A 85 -1 N HIS A 83 O ARG A 265 SHEET 7 B12 ASP A 91 TRP A 99 -1 O MET A 94 N THR A 82 SHEET 8 B12 VAL A 42 TYR A 50 -1 N VAL A 48 O LEU A 93 SHEET 9 B12 GLY A 129 SER A 135 -1 O GLU A 133 N TYR A 45 SHEET 10 B12 GLN A 330 ILE A 335 -1 O ILE A 335 N TYR A 130 SHEET 11 B12 ARG A 205 MET A 209 -1 N VAL A 206 O TYR A 334 SHEET 12 B12 GLN A 194 ALA A 197 -1 N GLN A 194 O MET A 209 SHEET 1 C 2 ALA B 32 ARG B 33 0 SHEET 2 C 2 SER B 161 THR B 162 -1 O SER B 161 N ARG B 33 SHEET 1 D12 PHE B 142 TYR B 146 0 SHEET 2 D12 ARG B 317 SER B 325 -1 O VAL B 322 N GLU B 143 SHEET 3 D12 ILE B 214 ASP B 222 -1 N ASP B 222 O ARG B 317 SHEET 4 D12 PHE B 273 TRP B 283 -1 O TRP B 283 N ALA B 215 SHEET 5 D12 CYS B 258 ILE B 267 -1 N VAL B 264 O TYR B 278 SHEET 6 D12 THR B 78 THR B 85 -1 N HIS B 83 O ARG B 265 SHEET 7 D12 ASP B 91 TRP B 99 -1 O MET B 94 N THR B 82 SHEET 8 D12 VAL B 42 TYR B 50 -1 N VAL B 48 O LEU B 93 SHEET 9 D12 GLY B 129 SER B 135 -1 O GLU B 133 N TYR B 45 SHEET 10 D12 GLN B 330 ILE B 335 -1 O ILE B 335 N TYR B 130 SHEET 11 D12 ARG B 205 MET B 209 -1 N ILE B 208 O PHE B 332 SHEET 12 D12 GLN B 194 ALA B 197 -1 N GLN B 194 O MET B 209 LINK NE2 HIS A 299 FE HEM A 501 1555 1555 1.92 LINK NE2 HIS B 299 FE HEM B 501 1555 1555 1.88 SITE 1 AC1 23 PHE A 27 LEU A 145 HIS A 169 GLY A 170 SITE 2 AC1 23 TYR A 171 TRP A 172 GLY A 173 SER A 174 SITE 3 AC1 23 MET A 175 SER A 219 ILE A 238 MET A 246 SITE 4 AC1 23 ASN A 279 LEU A 289 TRP A 292 ALA A 293 SITE 5 AC1 23 HIS A 299 ILE A 302 PHE A 303 PHE A 306 SITE 6 AC1 23 HOH A 643 HOH A 682 HOH A 715 SITE 1 AC2 23 PHE B 27 LEU B 145 HIS B 169 GLY B 170 SITE 2 AC2 23 TYR B 171 TRP B 172 GLY B 173 SER B 174 SITE 3 AC2 23 MET B 175 SER B 219 ILE B 238 MET B 246 SITE 4 AC2 23 ASN B 279 LEU B 289 TRP B 292 ALA B 293 SITE 5 AC2 23 HIS B 299 ILE B 302 PHE B 303 PHE B 306 SITE 6 AC2 23 HOH B 660 HOH B 664 HOH B 694 CRYST1 152.946 84.458 76.360 90.00 114.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006538 0.000000 0.002955 0.00000 SCALE2 0.000000 0.011840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014371 0.00000