HEADER TRANSFERASE/ANTIBIOTIC 02-NOV-12 3W0Q TITLE CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE TITLE 2 PHOSPHOTRANSFERASE APH(4)-IA (N203A), TERNARY COMPLEX WITH AMP-PNP TITLE 3 AND HYGROMYCIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYGROMYCIN-B 4-O-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APH(4), HYGROMYCIN B PHOSPHOTRANSFERASE, HYGROMYCIN-B COMPND 5 KINASE; COMPND 6 EC: 2.7.1.163; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HPH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.IINO,Y.TAKAKURA,K.FUKANO,Y.SASAKI,T.HOSHINO,K.OHSAWA,A.NAKAMURA, AUTHOR 2 S.YAJIMA REVDAT 2 20-MAR-24 3W0Q 1 REMARK SEQADV HETSYN REVDAT 1 07-AUG-13 3W0Q 0 JRNL AUTH D.IINO,Y.TAKAKURA,K.FUKANO,Y.SASAKI,T.HOSHINO,K.OHSAWA, JRNL AUTH 2 A.NAKAMURA,S.YAJIMA JRNL TITL CRYSTAL STRUCTURES OF THE TERNARY COMPLEX OF APH(4)-IA/HPH JRNL TITL 2 WITH HYGROMYCIN B AND AN ATP ANALOG USING A THERMOSTABLE JRNL TITL 3 MUTANT. JRNL REF J.STRUCT.BIOL. V. 183 76 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23747390 JRNL DOI 10.1016/J.JSB.2013.05.023 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2452 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3350 ; 1.957 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.443 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;13.471 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.426 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1888 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33356 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CHLORIDE, 12% MPD, 0.1M REMARK 280 SODIUM ACETAT, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.74733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.37367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.37367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.74733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 VAL A 304 REMARK 465 GLY A 305 REMARK 465 ARG A 306 REMARK 465 THR A 307 REMARK 465 GLN A 308 REMARK 465 ILE A 309 REMARK 465 ALA A 310 REMARK 465 ARG A 311 REMARK 465 ARG A 312 REMARK 465 SER A 313 REMARK 465 ALA A 314 REMARK 465 ALA A 315 REMARK 465 VAL A 316 REMARK 465 TRP A 317 REMARK 465 THR A 318 REMARK 465 ASP A 319 REMARK 465 GLY A 320 REMARK 465 CYS A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 VAL A 324 REMARK 465 LEU A 325 REMARK 465 ALA A 326 REMARK 465 ASP A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 ASN A 330 REMARK 465 ARG A 331 REMARK 465 ARG A 332 REMARK 465 PRO A 333 REMARK 465 SER A 334 REMARK 465 THR A 335 REMARK 465 ARG A 336 REMARK 465 PRO A 337 REMARK 465 ARG A 338 REMARK 465 ALA A 339 REMARK 465 LYS A 340 REMARK 465 GLU A 341 REMARK 465 LEU A 342 REMARK 465 GLU A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 513 O HOH A 768 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -7.38 65.58 REMARK 500 ASP A 24 53.80 35.29 REMARK 500 GLU A 33 32.61 -143.17 REMARK 500 ASP A 198 49.83 -140.11 REMARK 500 SER A 201 -99.76 -143.51 REMARK 500 ASP A 216 61.15 61.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HY0 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W0M RELATED DB: PDB REMARK 900 RELATED ID: 3W0N RELATED DB: PDB REMARK 900 RELATED ID: 3W0O RELATED DB: PDB REMARK 900 RELATED ID: 3W0P RELATED DB: PDB REMARK 900 RELATED ID: 3W0R RELATED DB: PDB REMARK 900 RELATED ID: 3W0S RELATED DB: PDB DBREF 3W0Q A 1 341 UNP P00557 KHYB_ECOLX 1 341 SEQADV 3W0Q GLY A 20 UNP P00557 ASP 20 ENGINEERED MUTATION SEQADV 3W0Q VAL A 118 UNP P00557 ALA 118 ENGINEERED MUTATION SEQADV 3W0Q ALA A 203 UNP P00557 ASN 203 ENGINEERED MUTATION SEQADV 3W0Q PRO A 225 UNP P00557 SER 225 ENGINEERED MUTATION SEQADV 3W0Q LEU A 226 UNP P00557 GLN 226 ENGINEERED MUTATION SEQADV 3W0Q ALA A 246 UNP P00557 THR 246 ENGINEERED MUTATION SEQADV 3W0Q LEU A 342 UNP P00557 EXPRESSION TAG SEQADV 3W0Q GLU A 343 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 344 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 345 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 346 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 347 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 348 UNP P00557 EXPRESSION TAG SEQADV 3W0Q HIS A 349 UNP P00557 EXPRESSION TAG SEQRES 1 A 349 MET LYS LYS PRO GLU LEU THR ALA THR SER VAL GLU LYS SEQRES 2 A 349 PHE LEU ILE GLU LYS PHE GLY SER VAL SER ASP LEU MET SEQRES 3 A 349 GLN LEU SER GLU GLY GLU GLU SER ARG ALA PHE SER PHE SEQRES 4 A 349 ASP VAL GLY GLY ARG GLY TYR VAL LEU ARG VAL ASN SER SEQRES 5 A 349 CYS ALA ASP GLY PHE TYR LYS ASP ARG TYR VAL TYR ARG SEQRES 6 A 349 HIS PHE ALA SER ALA ALA LEU PRO ILE PRO GLU VAL LEU SEQRES 7 A 349 ASP ILE GLY GLU PHE SER GLU SER LEU THR TYR CYS ILE SEQRES 8 A 349 SER ARG ARG ALA GLN GLY VAL THR LEU GLN ASP LEU PRO SEQRES 9 A 349 GLU THR GLU LEU PRO ALA VAL LEU GLN PRO VAL ALA GLU SEQRES 10 A 349 VAL MET ASP ALA ILE ALA ALA ALA ASP LEU SER GLN THR SEQRES 11 A 349 SER GLY PHE GLY PRO PHE GLY PRO GLN GLY ILE GLY GLN SEQRES 12 A 349 TYR THR THR TRP ARG ASP PHE ILE CYS ALA ILE ALA ASP SEQRES 13 A 349 PRO HIS VAL TYR HIS TRP GLN THR VAL MET ASP ASP THR SEQRES 14 A 349 VAL SER ALA SER VAL ALA GLN ALA LEU ASP GLU LEU MET SEQRES 15 A 349 LEU TRP ALA GLU ASP CYS PRO GLU VAL ARG HIS LEU VAL SEQRES 16 A 349 HIS ALA ASP PHE GLY SER ASN ALA VAL LEU THR ASP ASN SEQRES 17 A 349 GLY ARG ILE THR ALA VAL ILE ASP TRP SER GLU ALA MET SEQRES 18 A 349 PHE GLY ASP PRO LEU TYR GLU VAL ALA ASN ILE PHE PHE SEQRES 19 A 349 TRP ARG PRO TRP LEU ALA CYS MET GLU GLN GLN ALA ARG SEQRES 20 A 349 TYR PHE GLU ARG ARG HIS PRO GLU LEU ALA GLY SER PRO SEQRES 21 A 349 ARG LEU ARG ALA TYR MET LEU ARG ILE GLY LEU ASP GLN SEQRES 22 A 349 LEU TYR GLN SER LEU VAL ASP GLY ASN PHE ASP ASP ALA SEQRES 23 A 349 ALA TRP ALA GLN GLY ARG CYS ASP ALA ILE VAL ARG SER SEQRES 24 A 349 GLY ALA GLY THR VAL GLY ARG THR GLN ILE ALA ARG ARG SEQRES 25 A 349 SER ALA ALA VAL TRP THR ASP GLY CYS VAL GLU VAL LEU SEQRES 26 A 349 ALA ASP SER GLY ASN ARG ARG PRO SER THR ARG PRO ARG SEQRES 27 A 349 ALA LYS GLU LEU GLU HIS HIS HIS HIS HIS HIS HET ANP A 401 31 HET HY0 A 402 36 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM HY0 HYGROMYCIN B VARIANT HETSYN HY0 (2R,3'R,3AS,4S,4'S,5'R,6R,6'R,7S,7AS)-4-[(1R,2S,3R,5S, HETSYN 2 HY0 6R)-3-AZANYL-2,6-DIHYDROXY-5-(METHYLAMINO) HETSYN 3 HY0 CYCLOHEXYL]OXY-6'-[(1S) -1-AZANYL-2-HYDROXY-ETHYL]-6- HETSYN 4 HY0 (HYDROXYMETHYL)SPIRO[4,6,7,7A-TETRAHYDRO-3AH-[1, HETSYN 5 HY0 3]DIOXOLO[4,5-C]PYRAN-2,2'-OXANE]-3',4',5', 7-TETROL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HY0 C20 H37 N3 O13 FORMUL 4 HOH *289(H2 O) HELIX 1 1 SER A 10 GLU A 17 1 8 HELIX 2 2 ALA A 54 ALA A 68 1 15 HELIX 3 3 PRO A 104 ALA A 110 5 7 HELIX 4 4 VAL A 111 ALA A 125 1 15 HELIX 5 5 THR A 146 ALA A 153 1 8 HELIX 6 6 ILE A 154 ASP A 156 5 3 HELIX 7 7 HIS A 161 VAL A 165 5 5 HELIX 8 8 ASP A 167 ALA A 185 1 19 HELIX 9 9 GLU A 186 CYS A 188 5 3 HELIX 10 10 PRO A 225 TRP A 235 1 11 HELIX 11 11 LEU A 239 HIS A 253 1 15 HELIX 12 12 HIS A 253 GLY A 258 1 6 HELIX 13 13 SER A 259 GLY A 281 1 23 HELIX 14 14 ASN A 282 ALA A 301 1 20 SHEET 1 A 5 SER A 23 GLY A 31 0 SHEET 2 A 5 SER A 34 VAL A 41 -1 O SER A 38 N MET A 26 SHEET 3 A 5 ARG A 44 ASN A 51 -1 O LEU A 48 N PHE A 37 SHEET 4 A 5 THR A 88 ARG A 93 -1 O SER A 92 N VAL A 47 SHEET 5 A 5 VAL A 77 GLU A 82 -1 N ASP A 79 O ILE A 91 SHEET 1 B 3 VAL A 98 THR A 99 0 SHEET 2 B 3 VAL A 204 ASP A 207 -1 O THR A 206 N VAL A 98 SHEET 3 B 3 ARG A 210 VAL A 214 -1 O ALA A 213 N LEU A 205 SHEET 1 C 4 GLY A 142 TYR A 144 0 SHEET 2 C 4 PHE A 133 PHE A 136 -1 N PHE A 133 O TYR A 144 SHEET 3 C 4 MET A 221 GLY A 223 -1 O PHE A 222 N GLY A 134 SHEET 4 C 4 HIS A 193 VAL A 195 -1 N HIS A 193 O GLY A 223 CISPEP 1 LYS A 18 PHE A 19 0 -5.43 SITE 1 AC1 26 LEU A 28 SER A 29 PRO A 75 ARG A 93 SITE 2 AC1 26 ARG A 94 ALA A 95 LEU A 205 ILE A 215 SITE 3 AC1 26 HOH A 504 HOH A 512 HOH A 537 HOH A 542 SITE 4 AC1 26 HOH A 548 HOH A 554 HOH A 560 HOH A 567 SITE 5 AC1 26 HOH A 644 HOH A 661 HOH A 676 HOH A 678 SITE 6 AC1 26 HOH A 692 HOH A 707 HOH A 708 HOH A 713 SITE 7 AC1 26 HOH A 719 HOH A 779 SITE 1 AC2 20 GLN A 101 ASP A 126 SER A 128 ASP A 198 SITE 2 AC2 20 SER A 201 ASN A 202 SER A 218 ASN A 231 SITE 3 AC2 20 TRP A 235 TRP A 238 LEU A 239 MET A 242 SITE 4 AC2 20 GLN A 273 ASP A 285 HOH A 513 HOH A 589 SITE 5 AC2 20 HOH A 701 HOH A 705 HOH A 735 HOH A 768 CRYST1 70.072 70.072 124.121 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014271 0.008239 0.000000 0.00000 SCALE2 0.000000 0.016479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008057 0.00000