HEADER LYASE/LYASE INHIBITOR 02-NOV-12 3W0T TITLE HUMAN GLYOXALASE I WITH AN N-HYDROXYPYRIDONE DERIVATIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ALDOKETOMUTASE, GLYOXALASE I, GLX I, KETONE-ALDEHYDE MUTASE, COMPND 5 METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE; COMPND 6 EC: 4.4.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS GLYOXALASE, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.A.FUKAMI,M.IRIE,T.MATSUURA REVDAT 2 08-NOV-23 3W0T 1 REMARK SEQADV LINK REVDAT 1 06-NOV-13 3W0T 0 JRNL AUTH H.KOYANO,T.AOKI,S.YAMAMOTO,T.KOBAYASHI,T.MIURA,K.OHARA, JRNL AUTH 2 T.A.FUKAMI,M.IRIE,H.SAKAMOTO JRNL TITL N-HYDROXYPYRIDONE-BASED GLYOXALASE I INHIBITORS MIMICKING JRNL TITL 2 BINDING INTERACTIONS OF THE SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 145392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7284 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.18 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6399 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2417 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6092 REMARK 3 BIN R VALUE (WORKING SET) : 0.2409 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 307 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 959 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33380 REMARK 3 B22 (A**2) : -3.36850 REMARK 3 B33 (A**2) : 2.03470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.53810 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.155 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.061 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.061 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.058 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.059 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5981 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8109 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2115 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 161 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 845 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5981 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 748 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7600 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.13 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.351 REMARK 200 RESOLUTION RANGE LOW (A) : 23.507 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : 0.72500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3VW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% (W/V) PEG 2000 MME, 0.1M NA-HEPES REMARK 280 (PH 7.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.51500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 GLU C 2 REMARK 465 PRO C 3 REMARK 465 GLN C 4 REMARK 465 PRO C 5 REMARK 465 PRO C 6 REMARK 465 SER C 7 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 GLN D 4 REMARK 465 PRO D 5 REMARK 465 PRO D 6 REMARK 465 SER D 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 LYS B 84 NZ REMARK 470 LYS B 147 CD CE NZ REMARK 470 LYS C 77 CE NZ REMARK 470 LYS C 82 CD CE NZ REMARK 470 LYS C 84 CD CE NZ REMARK 470 LYS D 82 NZ REMARK 470 LYS D 84 CE NZ REMARK 470 LYS D 156 CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 33 OE1 REMARK 620 2 GLU A 99 OE1 80.5 REMARK 620 3 HIS B 126 NE2 92.4 100.5 REMARK 620 4 GLU B 172 OE2 88.8 168.9 83.2 REMARK 620 5 HPU B 204 O19 95.5 89.7 168.1 88.1 REMARK 620 6 HPU B 204 O16 158.3 119.3 92.4 70.8 77.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 NE2 REMARK 620 2 GLU A 172 OE1 82.2 REMARK 620 3 HPU A 202 O19 169.9 89.4 REMARK 620 4 HPU A 202 O16 96.6 70.2 75.2 REMARK 620 5 GLN B 33 OE1 91.9 93.2 94.1 159.9 REMARK 620 6 GLU B 99 OE1 98.4 177.4 90.3 112.2 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 33 OE1 REMARK 620 2 GLU C 99 OE1 82.8 REMARK 620 3 HIS D 126 NE2 91.9 95.7 REMARK 620 4 GLU D 172 OE1 89.7 171.5 80.4 REMARK 620 5 HPU D 203 O16 153.3 122.8 92.7 65.2 REMARK 620 6 HPU D 203 O19 94.0 93.6 169.6 91.0 78.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 126 NE2 REMARK 620 2 GLU C 172 OE2 81.0 REMARK 620 3 HPU C 202 O19 170.0 90.8 REMARK 620 4 HPU C 202 O16 97.2 68.6 74.2 REMARK 620 5 GLN D 33 OE1 90.4 89.8 95.4 155.4 REMARK 620 6 GLU D 99 OE1 98.9 178.0 89.4 113.4 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPU A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPU B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPU C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPU D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VW9 RELATED DB: PDB REMARK 900 RELATED ID: 3W0U RELATED DB: PDB DBREF 3W0T A 0 183 UNP Q04760 LGUL_HUMAN 1 184 DBREF 3W0T B 0 183 UNP Q04760 LGUL_HUMAN 1 184 DBREF 3W0T C 0 183 UNP Q04760 LGUL_HUMAN 1 184 DBREF 3W0T D 0 183 UNP Q04760 LGUL_HUMAN 1 184 SEQADV 3W0T GLY A -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0T SER A -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0T HIS A -1 UNP Q04760 EXPRESSION TAG SEQADV 3W0T GLY B -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0T SER B -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0T HIS B -1 UNP Q04760 EXPRESSION TAG SEQADV 3W0T GLY C -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0T SER C -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0T HIS C -1 UNP Q04760 EXPRESSION TAG SEQADV 3W0T GLY D -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0T SER D -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0T HIS D -1 UNP Q04760 EXPRESSION TAG SEQRES 1 A 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 A 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 A 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 A 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 A 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 A 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 A 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 A 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 A 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 A 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 A 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 A 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 A 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 A 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 A 187 MET ALA THR LEU MET SEQRES 1 B 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 B 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 B 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 B 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 B 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 B 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 B 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 B 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 B 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 B 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 B 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 B 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 B 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 B 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 B 187 MET ALA THR LEU MET SEQRES 1 C 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 C 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 C 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 C 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 C 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 C 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 C 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 C 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 C 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 C 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 C 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 C 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 C 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 C 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 C 187 MET ALA THR LEU MET SEQRES 1 D 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 D 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 D 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 D 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 D 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 D 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 D 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 D 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 D 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 D 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 D 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 D 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 D 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 D 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 D 187 MET ALA THR LEU MET HET ZN A 201 1 HET HPU A 202 25 HET ZN B 201 1 HET EPE B 202 15 HET EPE B 203 15 HET HPU B 204 25 HET ZN C 201 1 HET HPU C 202 25 HET ZN D 201 1 HET EPE D 202 15 HET HPU D 203 25 HETNAM ZN ZINC ION HETNAM HPU N-[3-(1-HYDROXY-6-OXO-4-PHENYL-1,6-DIHYDROPYRIDIN-2- HETNAM 2 HPU YL)PHENYL]METHANESULFONAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 ZN 4(ZN 2+) FORMUL 6 HPU 4(C18 H16 N2 O4 S) FORMUL 8 EPE 3(C8 H18 N2 O4 S) FORMUL 16 HOH *959(H2 O) HELIX 1 1 THR A 11 CYS A 18 1 8 HELIX 2 2 ASP A 23 LYS A 27 5 5 HELIX 3 3 ASP A 40 VAL A 51 1 12 HELIX 4 4 ASP A 76 ILE A 80 5 5 HELIX 5 5 GLU A 83 LEU A 92 1 10 HELIX 6 6 GLY A 105 ASP A 109 5 5 HELIX 7 7 ASP A 133 LEU A 144 1 12 HELIX 8 8 ASN A 175 MET A 183 5 9 HELIX 9 9 THR B 11 CYS B 18 1 8 HELIX 10 10 ASP B 23 LYS B 27 5 5 HELIX 11 11 ASP B 40 VAL B 51 1 12 HELIX 12 12 ASP B 76 ILE B 80 5 5 HELIX 13 13 GLU B 83 LEU B 92 1 10 HELIX 14 14 GLY B 105 ASP B 109 5 5 HELIX 15 15 ASP B 133 LEU B 144 1 12 HELIX 16 16 ASN B 175 MET B 183 5 9 HELIX 17 17 THR C 11 CYS C 18 1 8 HELIX 18 18 ASP C 23 LYS C 27 5 5 HELIX 19 19 ASP C 40 VAL C 51 1 12 HELIX 20 20 PRO C 63 MET C 65 5 3 HELIX 21 21 ASP C 76 ILE C 80 5 5 HELIX 22 22 GLU C 83 LEU C 92 1 10 HELIX 23 23 GLY C 105 ASP C 109 5 5 HELIX 24 24 ASP C 133 LEU C 144 1 12 HELIX 25 25 ASN C 175 MET C 183 5 9 HELIX 26 26 THR D 11 CYS D 18 1 8 HELIX 27 27 ASP D 23 LYS D 27 5 5 HELIX 28 28 ASP D 40 VAL D 51 1 12 HELIX 29 29 ASP D 76 ILE D 80 5 5 HELIX 30 30 GLU D 83 LEU D 92 1 10 HELIX 31 31 GLY D 105 ASP D 109 5 5 HELIX 32 32 ASP D 133 LEU D 144 1 12 HELIX 33 33 ASN D 175 MET D 183 5 9 SHEET 1 A 8 THR A 55 PHE A 62 0 SHEET 2 A 8 PHE A 67 ALA A 73 -1 O PHE A 71 N GLN A 58 SHEET 3 A 8 THR A 97 ASN A 103 -1 O LEU A 100 N TYR A 70 SHEET 4 A 8 LEU A 30 ARG A 37 1 N THR A 34 O GLU A 99 SHEET 5 A 8 PHE B 124 ALA B 130 -1 O HIS B 126 N MET A 35 SHEET 6 A 8 TRP B 170 LEU B 174 1 O GLU B 172 N ILE B 129 SHEET 7 A 8 ALA B 161 GLN B 164 -1 N ILE B 163 O ILE B 171 SHEET 8 A 8 PHE B 148 LYS B 150 -1 N VAL B 149 O PHE B 162 SHEET 1 B 8 PHE A 148 LYS A 150 0 SHEET 2 B 8 ALA A 161 GLN A 164 -1 O PHE A 162 N LYS A 150 SHEET 3 B 8 TRP A 170 LEU A 174 -1 O ILE A 173 N ALA A 161 SHEET 4 B 8 PHE A 124 ALA A 130 1 N ILE A 129 O GLU A 172 SHEET 5 B 8 LEU B 30 ARG B 37 -1 O MET B 35 N HIS A 126 SHEET 6 B 8 THR B 97 ASN B 103 1 O GLU B 99 N THR B 34 SHEET 7 B 8 PHE B 67 ALA B 73 -1 N TYR B 70 O LEU B 100 SHEET 8 B 8 THR B 55 PHE B 62 -1 N GLN B 58 O PHE B 71 SHEET 1 C 8 THR C 55 PHE C 62 0 SHEET 2 C 8 PHE C 67 ALA C 73 -1 O PHE C 71 N GLN C 58 SHEET 3 C 8 THR C 97 ASN C 103 -1 O HIS C 102 N SER C 68 SHEET 4 C 8 LEU C 30 ARG C 37 1 N THR C 34 O GLU C 99 SHEET 5 C 8 PHE D 124 ALA D 130 -1 O HIS D 126 N MET C 35 SHEET 6 C 8 TRP D 170 LEU D 174 1 O GLU D 172 N ILE D 129 SHEET 7 C 8 ALA D 161 GLN D 164 -1 N ILE D 163 O ILE D 171 SHEET 8 C 8 PHE D 148 LYS D 150 -1 N LYS D 150 O PHE D 162 SHEET 1 D 8 LYS C 147 LYS C 150 0 SHEET 2 D 8 ALA C 161 GLN C 164 -1 O PHE C 162 N LYS C 150 SHEET 3 D 8 TRP C 170 LEU C 174 -1 O ILE C 173 N ALA C 161 SHEET 4 D 8 PHE C 124 ALA C 130 1 N ILE C 129 O GLU C 172 SHEET 5 D 8 LEU D 30 ARG D 37 -1 O MET D 35 N HIS C 126 SHEET 6 D 8 THR D 97 ASN D 103 1 O GLU D 99 N THR D 34 SHEET 7 D 8 PHE D 67 ALA D 73 -1 N TYR D 70 O LEU D 100 SHEET 8 D 8 THR D 55 PHE D 62 -1 N GLN D 58 O PHE D 71 LINK OE1 GLN A 33 ZN ZN A 201 1555 1555 2.00 LINK OE1 GLU A 99 ZN ZN A 201 1555 1555 2.04 LINK NE2 HIS A 126 ZN ZN B 201 1555 1555 2.13 LINK OE1 GLU A 172 ZN ZN B 201 1555 1555 2.25 LINK ZN ZN A 201 NE2 HIS B 126 1555 1555 2.16 LINK ZN ZN A 201 OE2 GLU B 172 1555 1555 2.22 LINK ZN ZN A 201 O19 HPU B 204 1555 1555 2.11 LINK ZN ZN A 201 O16 HPU B 204 1555 1555 2.11 LINK O19 HPU A 202 ZN ZN B 201 1555 1555 2.17 LINK O16 HPU A 202 ZN ZN B 201 1555 1555 2.19 LINK OE1 GLN B 33 ZN ZN B 201 1555 1555 1.98 LINK OE1 GLU B 99 ZN ZN B 201 1555 1555 2.01 LINK OE1 GLN C 33 ZN ZN C 201 1555 1555 2.04 LINK OE1 GLU C 99 ZN ZN C 201 1555 1555 2.00 LINK NE2 HIS C 126 ZN ZN D 201 1555 1555 2.09 LINK OE2 GLU C 172 ZN ZN D 201 1555 1555 2.33 LINK ZN ZN C 201 NE2 HIS D 126 1555 1555 2.10 LINK ZN ZN C 201 OE1 GLU D 172 1555 1555 2.37 LINK ZN ZN C 201 O16 HPU D 203 1555 1555 2.04 LINK ZN ZN C 201 O19 HPU D 203 1555 1555 2.13 LINK O19 HPU C 202 ZN ZN D 201 1555 1555 2.15 LINK O16 HPU C 202 ZN ZN D 201 1555 1555 2.18 LINK OE1 GLN D 33 ZN ZN D 201 1555 1555 2.02 LINK OE1 GLU D 99 ZN ZN D 201 1555 1555 2.01 CISPEP 1 ASP A 120 PRO A 121 0 -3.25 CISPEP 2 ASP B 120 PRO B 121 0 -0.31 CISPEP 3 ASP C 120 PRO C 121 0 2.15 CISPEP 4 ASP D 120 PRO D 121 0 -0.13 SITE 1 AC1 5 GLN A 33 GLU A 99 HIS B 126 GLU B 172 SITE 2 AC1 5 HPU B 204 SITE 1 AC2 15 HIS A 126 MET A 157 GLU A 172 MET A 179 SITE 2 AC2 15 HOH A 473 GLN B 33 MET B 35 CYS B 60 SITE 3 AC2 15 PHE B 67 LEU B 69 LEU B 92 GLU B 99 SITE 4 AC2 15 ZN B 201 HOH B1024 HOH B1048 SITE 1 AC3 5 HIS A 126 GLU A 172 HPU A 202 GLN B 33 SITE 2 AC3 5 GLU B 99 SITE 1 AC4 11 MET A 65 LYS B 150 GLY B 155 LYS B 156 SITE 2 AC4 11 MET B 157 HPU B 204 HOH B1197 HOH B1213 SITE 3 AC4 11 GLU D 110 HOH D 526 HOH D 546 SITE 1 AC5 3 SER B 20 ASP B 21 HOH B1196 SITE 1 AC6 18 GLN A 33 MET A 35 CYS A 60 PHE A 67 SITE 2 AC6 18 LEU A 69 GLU A 99 ZN A 201 HOH A 337 SITE 3 AC6 18 HIS B 126 MET B 157 LEU B 160 GLU B 172 SITE 4 AC6 18 MET B 179 MET B 183 EPE B 202 HOH B1065 SITE 5 AC6 18 HOH B1154 HOH B1197 SITE 1 AC7 5 GLN C 33 GLU C 99 HIS D 126 GLU D 172 SITE 2 AC7 5 HPU D 203 SITE 1 AC8 15 HIS C 126 GLU C 172 MET C 179 MET C 183 SITE 2 AC8 15 HOH C 450 HOH C 468 GLN D 33 MET D 35 SITE 3 AC8 15 CYS D 60 PHE D 67 LEU D 69 GLU D 99 SITE 4 AC8 15 ZN D 201 HOH D 325 HOH D 335 SITE 1 AC9 5 HIS C 126 GLU C 172 HPU C 202 GLN D 33 SITE 2 AC9 5 GLU D 99 SITE 1 BC1 5 GLU B 83 CYS D 19 SER D 20 ASP D 21 SITE 2 BC1 5 HOH D 472 SITE 1 BC2 16 GLU B 2 PRO B 3 GLN C 33 MET C 35 SITE 2 BC2 16 CYS C 60 PHE C 62 LEU C 69 PHE C 71 SITE 3 BC2 16 GLU C 99 ZN C 201 HOH C 327 HIS D 126 SITE 4 BC2 16 GLU D 172 MET D 179 MET D 183 HOH D 374 CRYST1 66.570 81.030 68.620 90.00 90.13 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015022 0.000000 0.000034 0.00000 SCALE2 0.000000 0.012341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014573 0.00000