HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-NOV-12 3W18 TITLE STRUCTURE OF AURORA KINASE A COMPLEXED TO BENZOIMIDAZOLE-INDAZOLE TITLE 2 INHIBITOR XIII COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN, UNP RESIDUES 126-403; COMPND 5 SYNONYM: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA- COMPND 6 RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, COMPND 7 SERINE/THREONINE-PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE COMPND 8 6, SERINE/THREONINE-PROTEIN KINASE AURORA-A; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.M.OLIVEIRA,N.A.KAIRIES,R.A.ENGH REVDAT 2 20-MAR-24 3W18 1 REMARK REVDAT 1 05-FEB-14 3W18 0 JRNL AUTH T.M.OLIVEIRA,N.A.KAIRIES,R.A.ENGH JRNL TITL FLEXIBILITY AND MULTIPLE CONFORMATIONS OF THE ACTIVATION AND JRNL TITL 2 GLYCINE RICH LOOPS OF AURORA A ACCOMPANYING INHIBITOR JRNL TITL 3 BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.730 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4007 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5416 ; 1.768 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 7.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;38.845 ;23.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;22.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;22.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3038 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2343 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3767 ; 1.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1664 ; 2.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1649 ; 3.664 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 126 A 388 6 REMARK 3 1 B 126 B 388 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1884 ; 0.61 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1884 ; 3.04 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 76 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.97000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.97000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 144 REMARK 465 GLY A 145 REMARK 465 GLY A 173 REMARK 465 VAL A 174 REMARK 465 GLU A 175 REMARK 465 HIS A 176 REMARK 465 GLN A 177 REMARK 465 LEU A 178 REMARK 465 ARG A 179 REMARK 465 ASP A 274 REMARK 465 PHE A 275 REMARK 465 GLY A 276 REMARK 465 TRP A 277 REMARK 465 SER A 278 REMARK 465 VAL A 279 REMARK 465 HIS A 280 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 465 ARG A 285 REMARK 465 ARG A 286 REMARK 465 THR A 287 REMARK 465 THR A 288 REMARK 465 LEU A 289 REMARK 465 CYS A 290 REMARK 465 ARG A 304 REMARK 465 MET A 305 REMARK 465 HIS A 306 REMARK 465 LYS A 389 REMARK 465 PRO A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 CYS A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 LYS B 171 REMARK 465 ALA B 172 REMARK 465 GLY B 173 REMARK 465 VAL B 174 REMARK 465 GLU B 175 REMARK 465 HIS B 176 REMARK 465 GLN B 177 REMARK 465 LEU B 178 REMARK 465 ARG B 179 REMARK 465 ARG B 180 REMARK 465 GLU B 181 REMARK 465 SER B 278 REMARK 465 VAL B 279 REMARK 465 HIS B 280 REMARK 465 ALA B 281 REMARK 465 PRO B 282 REMARK 465 SER B 283 REMARK 465 SER B 284 REMARK 465 ARG B 285 REMARK 465 ARG B 286 REMARK 465 THR B 287 REMARK 465 THR B 288 REMARK 465 LEU B 289 REMARK 465 CYS B 290 REMARK 465 ARG B 304 REMARK 465 MET B 305 REMARK 465 HIS B 306 REMARK 465 LYS B 389 REMARK 465 PRO B 390 REMARK 465 SER B 391 REMARK 465 ASN B 392 REMARK 465 CYS B 393 REMARK 465 GLN B 394 REMARK 465 ASN B 395 REMARK 465 LYS B 396 REMARK 465 GLU B 397 REMARK 465 SER B 398 REMARK 465 ALA B 399 REMARK 465 SER B 400 REMARK 465 LYS B 401 REMARK 465 GLN B 402 REMARK 465 SER B 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 307 N REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 PHE B 275 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP B 277 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 277 CZ3 CH2 REMARK 470 ASP B 307 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 291 O HOH B 639 2.14 REMARK 500 NE ARG B 137 O HOH B 626 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 153 OE1 GLU B 354 4545 2.04 REMARK 500 NZ LYS A 153 OD2 ASP A 350 3545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 354 CG GLU A 354 CD 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 141 167.26 175.98 REMARK 500 GLN A 168 9.57 -55.28 REMARK 500 LYS A 171 -133.09 -98.64 REMARK 500 GLU A 181 -28.66 71.87 REMARK 500 ASP A 202 -168.52 -120.66 REMARK 500 SER A 226 -62.74 78.33 REMARK 500 LYS A 250 36.69 -94.65 REMARK 500 ARG A 251 61.50 12.76 REMARK 500 ARG A 255 -109.81 -81.44 REMARK 500 GLU A 302 -104.74 -78.09 REMARK 500 SER A 369 1.06 -61.08 REMARK 500 LEU B 169 -10.53 -160.38 REMARK 500 ASP B 202 -155.34 -121.91 REMARK 500 SER B 226 -48.38 77.95 REMARK 500 ARG B 251 69.49 61.05 REMARK 500 VAL B 252 90.44 -161.79 REMARK 500 ARG B 255 -107.06 -55.61 REMARK 500 PHE B 275 -97.42 24.17 REMARK 500 TYR B 334 -35.08 -25.27 REMARK 500 VAL B 344 55.89 30.77 REMARK 500 MET B 373 171.00 -59.47 REMARK 500 SER B 387 94.31 -68.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N13 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N13 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W10 RELATED DB: PDB REMARK 900 RELATED ID: 3W16 RELATED DB: PDB DBREF 3W18 A 126 403 UNP O14965 AURKA_HUMAN 126 403 DBREF 3W18 B 126 403 UNP O14965 AURKA_HUMAN 126 403 SEQRES 1 A 278 ARG GLN TRP ALA LEU GLU ASP PHE GLU ILE GLY ARG PRO SEQRES 2 A 278 LEU GLY LYS GLY LYS PHE GLY ASN VAL TYR LEU ALA ARG SEQRES 3 A 278 GLU LYS GLN SER LYS PHE ILE LEU ALA LEU LYS VAL LEU SEQRES 4 A 278 PHE LYS ALA GLN LEU GLU LYS ALA GLY VAL GLU HIS GLN SEQRES 5 A 278 LEU ARG ARG GLU VAL GLU ILE GLN SER HIS LEU ARG HIS SEQRES 6 A 278 PRO ASN ILE LEU ARG LEU TYR GLY TYR PHE HIS ASP ALA SEQRES 7 A 278 THR ARG VAL TYR LEU ILE LEU GLU TYR ALA PRO LEU GLY SEQRES 8 A 278 THR VAL TYR ARG GLU LEU GLN LYS LEU SER LYS PHE ASP SEQRES 9 A 278 GLU GLN ARG THR ALA THR TYR ILE THR GLU LEU ALA ASN SEQRES 10 A 278 ALA LEU SER TYR CYS HIS SER LYS ARG VAL ILE HIS ARG SEQRES 11 A 278 ASP ILE LYS PRO GLU ASN LEU LEU LEU GLY SER ALA GLY SEQRES 12 A 278 GLU LEU LYS ILE ALA ASP PHE GLY TRP SER VAL HIS ALA SEQRES 13 A 278 PRO SER SER ARG ARG THR THR LEU CYS GLY THR LEU ASP SEQRES 14 A 278 TYR LEU PRO PRO GLU MET ILE GLU GLY ARG MET HIS ASP SEQRES 15 A 278 GLU LYS VAL ASP LEU TRP SER LEU GLY VAL LEU CYS TYR SEQRES 16 A 278 GLU PHE LEU VAL GLY LYS PRO PRO PHE GLU ALA ASN THR SEQRES 17 A 278 TYR GLN GLU THR TYR LYS ARG ILE SER ARG VAL GLU PHE SEQRES 18 A 278 THR PHE PRO ASP PHE VAL THR GLU GLY ALA ARG ASP LEU SEQRES 19 A 278 ILE SER ARG LEU LEU LYS HIS ASN PRO SER GLN ARG PRO SEQRES 20 A 278 MET LEU ARG GLU VAL LEU GLU HIS PRO TRP ILE THR ALA SEQRES 21 A 278 ASN SER SER LYS PRO SER ASN CYS GLN ASN LYS GLU SER SEQRES 22 A 278 ALA SER LYS GLN SER SEQRES 1 B 278 ARG GLN TRP ALA LEU GLU ASP PHE GLU ILE GLY ARG PRO SEQRES 2 B 278 LEU GLY LYS GLY LYS PHE GLY ASN VAL TYR LEU ALA ARG SEQRES 3 B 278 GLU LYS GLN SER LYS PHE ILE LEU ALA LEU LYS VAL LEU SEQRES 4 B 278 PHE LYS ALA GLN LEU GLU LYS ALA GLY VAL GLU HIS GLN SEQRES 5 B 278 LEU ARG ARG GLU VAL GLU ILE GLN SER HIS LEU ARG HIS SEQRES 6 B 278 PRO ASN ILE LEU ARG LEU TYR GLY TYR PHE HIS ASP ALA SEQRES 7 B 278 THR ARG VAL TYR LEU ILE LEU GLU TYR ALA PRO LEU GLY SEQRES 8 B 278 THR VAL TYR ARG GLU LEU GLN LYS LEU SER LYS PHE ASP SEQRES 9 B 278 GLU GLN ARG THR ALA THR TYR ILE THR GLU LEU ALA ASN SEQRES 10 B 278 ALA LEU SER TYR CYS HIS SER LYS ARG VAL ILE HIS ARG SEQRES 11 B 278 ASP ILE LYS PRO GLU ASN LEU LEU LEU GLY SER ALA GLY SEQRES 12 B 278 GLU LEU LYS ILE ALA ASP PHE GLY TRP SER VAL HIS ALA SEQRES 13 B 278 PRO SER SER ARG ARG THR THR LEU CYS GLY THR LEU ASP SEQRES 14 B 278 TYR LEU PRO PRO GLU MET ILE GLU GLY ARG MET HIS ASP SEQRES 15 B 278 GLU LYS VAL ASP LEU TRP SER LEU GLY VAL LEU CYS TYR SEQRES 16 B 278 GLU PHE LEU VAL GLY LYS PRO PRO PHE GLU ALA ASN THR SEQRES 17 B 278 TYR GLN GLU THR TYR LYS ARG ILE SER ARG VAL GLU PHE SEQRES 18 B 278 THR PHE PRO ASP PHE VAL THR GLU GLY ALA ARG ASP LEU SEQRES 19 B 278 ILE SER ARG LEU LEU LYS HIS ASN PRO SER GLN ARG PRO SEQRES 20 B 278 MET LEU ARG GLU VAL LEU GLU HIS PRO TRP ILE THR ALA SEQRES 21 B 278 ASN SER SER LYS PRO SER ASN CYS GLN ASN LYS GLU SER SEQRES 22 B 278 ALA SER LYS GLN SER HET N13 A 501 34 HET N13 B 501 34 HETNAM N13 2-{3-[3-(1H-BENZIMIDAZOL-2-YL)-1H-INDAZOL-6-YL]-1H- HETNAM 2 N13 PYRAZOL-5-YL}-N-(3-FLUOROPHENYL)ACETAMIDE FORMUL 3 N13 2(C25 H18 F N7 O) FORMUL 5 HOH *81(H2 O) HELIX 1 1 ALA A 129 GLU A 131 5 3 HELIX 2 2 LYS A 166 LYS A 171 1 6 HELIX 3 3 GLU A 181 HIS A 187 1 7 HELIX 4 4 THR A 217 SER A 226 1 10 HELIX 5 5 ASP A 229 LYS A 250 1 22 HELIX 6 6 LYS A 258 GLU A 260 5 3 HELIX 7 7 THR A 292 LEU A 296 5 5 HELIX 8 8 LYS A 309 GLY A 325 1 17 HELIX 9 9 THR A 333 ARG A 343 1 11 HELIX 10 10 THR A 353 LEU A 364 1 12 HELIX 11 11 ASN A 367 ARG A 371 5 5 HELIX 12 12 MET A 373 GLU A 379 1 7 HELIX 13 13 HIS A 380 SER A 387 1 8 HELIX 14 14 ALA B 129 GLU B 131 5 3 HELIX 15 15 LYS B 141 ASN B 146 1 6 HELIX 16 16 GLU B 183 LEU B 188 1 6 HELIX 17 17 THR B 217 SER B 226 1 10 HELIX 18 18 ASP B 229 LYS B 250 1 22 HELIX 19 19 LYS B 258 GLU B 260 5 3 HELIX 20 20 PRO B 297 GLY B 303 1 7 HELIX 21 21 GLU B 308 GLY B 325 1 18 HELIX 22 22 THR B 333 ARG B 343 1 11 HELIX 23 23 THR B 353 LEU B 364 1 12 HELIX 24 24 ASN B 367 ARG B 371 5 5 HELIX 25 25 MET B 373 HIS B 380 1 8 HELIX 26 26 HIS B 380 SER B 387 1 8 SHEET 1 A 5 PHE A 133 PRO A 138 0 SHEET 2 A 5 VAL A 147 GLU A 152 -1 O ARG A 151 N GLU A 134 SHEET 3 A 5 ILE A 158 PHE A 165 -1 O LEU A 159 N ALA A 150 SHEET 4 A 5 ARG A 205 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 A 5 LEU A 196 HIS A 201 -1 N PHE A 200 O TYR A 207 SHEET 1 B 2 LEU A 262 LEU A 264 0 SHEET 2 B 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 C 5 PHE B 133 PRO B 138 0 SHEET 2 C 5 TYR B 148 GLU B 152 -1 O LEU B 149 N GLY B 136 SHEET 3 C 5 ILE B 158 PHE B 165 -1 O LEU B 161 N TYR B 148 SHEET 4 C 5 ARG B 205 LEU B 210 -1 O LEU B 210 N ALA B 160 SHEET 5 C 5 LEU B 196 HIS B 201 -1 N GLY B 198 O ILE B 209 SHEET 1 D 2 LEU B 262 LEU B 264 0 SHEET 2 D 2 LEU B 270 ILE B 272 -1 O LYS B 271 N LEU B 263 SITE 1 AC1 10 LEU A 139 LYS A 162 GLN A 185 LEU A 194 SITE 2 AC1 10 LEU A 208 GLU A 211 TYR A 212 ALA A 213 SITE 3 AC1 10 GLY A 216 LEU A 263 SITE 1 AC2 11 LEU B 139 PHE B 144 VAL B 147 LYS B 162 SITE 2 AC2 11 GLN B 185 LEU B 208 GLU B 211 ALA B 213 SITE 3 AC2 11 GLY B 216 LEU B 263 ALA B 273 CRYST1 75.940 85.860 85.290 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011725 0.00000