HEADER OXIDOREDUCTASE 28-NOV-12 3W2F TITLE CRYSTAL STRUCTURE OF OXIDATION INTERMEDIATE (10 MIN) OF NADH- TITLE 2 CYTOCHROME B5 REDUCTASE FROM PIG LIVER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-CYTOCHROME B5 REDUCTASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B5R, CYTOCHROME B5 REDUCTASE, DIAPHORASE-1; COMPND 5 EC: 1.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CYB5R3, DIA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS REDUCTASE, CYTOCHROME B5, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YAMADA,T.TAMADA,F.MATSUMOTO,Y.SHOYAMA,S.KIMURA,R.KUROKI,K.MIKI REVDAT 3 20-MAR-24 3W2F 1 REMARK REVDAT 2 30-APR-14 3W2F 1 JRNL REVDAT 1 17-JUL-13 3W2F 0 JRNL AUTH M.YAMADA,T.TAMADA,K.TAKEDA,F.MATSUMOTO,H.OHNO,M.KOSUGI, JRNL AUTH 2 K.TAKABA,Y.SHOYAMA,S.KIMURA,R.KUROKI,K.MIKI JRNL TITL ELUCIDATIONS OF THE CATALYTIC CYCLE OF NADH-CYTOCHROME B5 JRNL TITL 2 REDUCTASE BY X-RAY CRYSTALLOGRAPHY: NEW INSIGHTS INTO JRNL TITL 3 REGULATION OF EFFICIENT ELECTRON TRANSFER JRNL REF J.MOL.BIOL. V. 425 4295 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831226 JRNL DOI 10.1016/J.JMB.2013.06.010 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 35131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8178 - 4.2377 0.94 2477 145 0.1800 0.1993 REMARK 3 2 4.2377 - 3.3649 0.98 2482 145 0.1469 0.1676 REMARK 3 3 3.3649 - 2.9399 1.00 2464 145 0.1518 0.1782 REMARK 3 4 2.9399 - 2.6713 0.99 2437 144 0.1652 0.2023 REMARK 3 5 2.6713 - 2.4799 0.99 2439 144 0.1686 0.2026 REMARK 3 6 2.4799 - 2.3338 0.98 2419 139 0.1646 0.2095 REMARK 3 7 2.3338 - 2.2169 0.99 2391 141 0.1610 0.2073 REMARK 3 8 2.2169 - 2.1205 0.98 2394 137 0.1579 0.1934 REMARK 3 9 2.1205 - 2.0388 0.97 2362 138 0.1582 0.1722 REMARK 3 10 2.0388 - 1.9685 0.96 2333 136 0.1685 0.2176 REMARK 3 11 1.9685 - 1.9070 0.95 2300 136 0.1665 0.1965 REMARK 3 12 1.9070 - 1.8525 0.94 2289 133 0.1803 0.2014 REMARK 3 13 1.8525 - 1.8037 0.92 2225 128 0.1880 0.2009 REMARK 3 14 1.8037 - 1.7597 0.90 2176 132 0.1948 0.2172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2330 REMARK 3 ANGLE : 1.252 3186 REMARK 3 CHIRALITY : 0.080 343 REMARK 3 PLANARITY : 0.006 405 REMARK 3 DIHEDRAL : 18.008 887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:34) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3350 8.8516 10.3345 REMARK 3 T TENSOR REMARK 3 T11: 0.1009 T22: 0.2374 REMARK 3 T33: 0.1624 T12: 0.0362 REMARK 3 T13: -0.0098 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.6171 L22: 3.7465 REMARK 3 L33: 2.5401 L12: 0.8433 REMARK 3 L13: -0.8628 L23: -2.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: -0.1360 S13: 0.0493 REMARK 3 S21: 0.3079 S22: -0.1882 S23: -0.2772 REMARK 3 S31: 0.0064 S32: 0.4798 S33: 0.1027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 35:49) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0083 17.6046 11.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.2348 REMARK 3 T33: 0.2305 T12: -0.0655 REMARK 3 T13: -0.0231 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.8190 L22: 1.9583 REMARK 3 L33: 0.6920 L12: 0.1995 REMARK 3 L13: -0.8606 L23: -0.9135 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.2949 S13: 0.3677 REMARK 3 S21: 0.1971 S22: -0.0768 S23: -0.3051 REMARK 3 S31: -0.3354 S32: 0.5323 S33: -0.0232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 50:65) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0338 2.5205 -0.9554 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.1362 REMARK 3 T33: 0.1135 T12: 0.0416 REMARK 3 T13: 0.0084 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.7496 L22: 5.2000 REMARK 3 L33: 5.6810 L12: -0.5484 REMARK 3 L13: -1.1310 L23: 2.5062 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: 0.2100 S13: -0.0964 REMARK 3 S21: -0.3337 S22: 0.0717 S23: -0.3340 REMARK 3 S31: 0.2892 S32: 0.3199 S33: -0.0965 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 66:114) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3304 0.5434 8.5021 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.2054 REMARK 3 T33: 0.1729 T12: 0.1026 REMARK 3 T13: 0.0102 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.0349 L22: 1.7733 REMARK 3 L33: 2.0500 L12: -0.1834 REMARK 3 L13: -0.9513 L23: -0.7522 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.0650 S13: -0.2059 REMARK 3 S21: -0.0785 S22: -0.1205 S23: -0.3360 REMARK 3 S31: 0.4850 S32: 0.4779 S33: 0.0471 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 115:144) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3298 17.8041 11.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.2086 REMARK 3 T33: 0.2262 T12: 0.0595 REMARK 3 T13: 0.0381 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.6311 L22: 1.7397 REMARK 3 L33: 1.9420 L12: -0.0649 REMARK 3 L13: 0.2729 L23: -0.6737 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.0914 S13: 0.0785 REMARK 3 S21: 0.2428 S22: 0.1577 S23: 0.3348 REMARK 3 S31: -0.4371 S32: -0.4562 S33: -0.1217 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:199) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9822 5.4167 24.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.1411 REMARK 3 T33: 0.1114 T12: 0.0239 REMARK 3 T13: -0.0264 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4634 L22: 2.9004 REMARK 3 L33: 2.4553 L12: 0.0913 REMARK 3 L13: -0.8772 L23: -0.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.1909 S13: 0.0692 REMARK 3 S21: 0.4868 S22: 0.0611 S23: -0.1650 REMARK 3 S31: 0.0694 S32: 0.1041 S33: -0.0289 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 200:225) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3254 -5.0215 27.6253 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.1773 REMARK 3 T33: 0.1569 T12: -0.0071 REMARK 3 T13: 0.0277 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.2888 L22: 2.8126 REMARK 3 L33: 2.0761 L12: 0.3791 REMARK 3 L13: 0.0781 L23: -1.2683 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.1797 S13: -0.2700 REMARK 3 S21: 0.6534 S22: 0.0294 S23: 0.0115 REMARK 3 S31: 0.6056 S32: -0.1839 S33: -0.1117 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 226:272) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8244 2.4310 17.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.3472 REMARK 3 T33: 0.2959 T12: -0.0770 REMARK 3 T13: 0.0334 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 2.1387 L22: 1.6396 REMARK 3 L33: 2.1038 L12: -0.2467 REMARK 3 L13: -0.6937 L23: -0.3051 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.1362 S13: -0.0680 REMARK 3 S21: 0.0737 S22: 0.1168 S23: 0.5936 REMARK 3 S31: 0.3863 S32: -0.8391 S33: 0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8_1069 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70%(V/V) MPD, 0.1M HEPES-NAOH PH 6.5, REMARK 280 25MM NADH, 1MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.72800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.81050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.50700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.81050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.72800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.50700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 667 O HOH A 674 1.81 REMARK 500 O HOH A 638 O HOH A 663 1.87 REMARK 500 O HOH A 616 O HOH A 627 1.91 REMARK 500 O HOH A 615 O HOH A 623 1.96 REMARK 500 O HOH A 646 O HOH A 652 1.99 REMARK 500 O HOH A 640 O HOH A 644 2.00 REMARK 500 O HOH A 493 O HOH A 569 2.00 REMARK 500 O HOH A 548 O HOH A 600 2.01 REMARK 500 O HOH A 624 O HOH A 634 2.05 REMARK 500 O HOH A 614 O HOH A 623 2.06 REMARK 500 O HOH A 614 O HOH A 615 2.07 REMARK 500 O HOH A 609 O HOH A 633 2.10 REMARK 500 O HOH A 636 O HOH A 668 2.11 REMARK 500 O HOH A 620 O HOH A 625 2.15 REMARK 500 O HOH A 618 O HOH A 632 2.18 REMARK 500 O HOH A 484 O HOH A 623 2.19 REMARK 500 O HOH A 599 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 -159.34 -160.51 REMARK 500 THR A 88 -54.68 -128.93 REMARK 500 GLU A 215 -71.00 -46.25 REMARK 500 TYR A 219 -150.78 -111.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NDH RELATED DB: PDB REMARK 900 RELATED ID: 3W2E RELATED DB: PDB REMARK 900 RELATED ID: 3W2G RELATED DB: PDB REMARK 900 RELATED ID: 3W2H RELATED DB: PDB REMARK 900 RELATED ID: 3W2I RELATED DB: PDB REMARK 900 RELATED ID: 3W5H RELATED DB: PDB DBREF 3W2F A 2 272 UNP P83686 NB5R3_PIG 2 272 SEQRES 1 A 271 THR PRO ALA ILE THR LEU GLU ASN PRO ASP ILE LYS TYR SEQRES 2 A 271 PRO LEU ARG LEU ILE ASP LYS GLU VAL VAL ASN HIS ASP SEQRES 3 A 271 THR ARG ARG PHE ARG PHE ALA LEU PRO SER PRO GLU HIS SEQRES 4 A 271 ILE LEU GLY LEU PRO VAL GLY GLN HIS ILE TYR LEU SER SEQRES 5 A 271 ALA ARG ILE ASP GLY ASN LEU VAL ILE ARG PRO TYR THR SEQRES 6 A 271 PRO VAL SER SER ASP ASP ASP LYS GLY PHE VAL ASP LEU SEQRES 7 A 271 VAL ILE LYS VAL TYR PHE LYS ASP THR HIS PRO LYS PHE SEQRES 8 A 271 PRO ALA GLY GLY LYS MET SER GLN TYR LEU GLU SER MET SEQRES 9 A 271 LYS ILE GLY ASP THR ILE GLU PHE ARG GLY PRO ASN GLY SEQRES 10 A 271 LEU LEU VAL TYR GLN GLY LYS GLY LYS PHE ALA ILE ARG SEQRES 11 A 271 PRO ASP LYS LYS SER SER PRO VAL ILE LYS THR VAL LYS SEQRES 12 A 271 SER VAL GLY MET ILE ALA GLY GLY THR GLY ILE THR PRO SEQRES 13 A 271 MET LEU GLN VAL ILE ARG ALA ILE MET LYS ASP PRO ASP SEQRES 14 A 271 ASP HIS THR VAL CYS HIS LEU LEU PHE ALA ASN GLN THR SEQRES 15 A 271 GLU LYS ASP ILE LEU LEU ARG PRO GLU LEU GLU GLU LEU SEQRES 16 A 271 ARG ASN GLU HIS SER ALA ARG PHE LYS LEU TRP TYR THR SEQRES 17 A 271 VAL ASP ARG ALA PRO GLU ALA TRP ASP TYR SER GLN GLY SEQRES 18 A 271 PHE VAL ASN GLU GLU MET ILE ARG ASP HIS LEU PRO PRO SEQRES 19 A 271 PRO GLU GLU GLU PRO LEU VAL LEU MET CYS GLY PRO PRO SEQRES 20 A 271 PRO MET ILE GLN TYR ALA CYS LEU PRO ASN LEU GLU ARG SEQRES 21 A 271 VAL GLY HIS PRO LYS GLU ARG CYS PHE ALA PHE HET FAD A 301 53 HET NAD A 302 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *274(H2 O) HELIX 1 1 GLY A 96 MET A 105 1 10 HELIX 2 2 GLY A 154 ASP A 168 1 15 HELIX 3 3 THR A 183 ILE A 187 5 5 HELIX 4 4 LEU A 189 HIS A 200 1 12 HELIX 5 5 ASN A 225 LEU A 233 1 9 HELIX 6 6 PRO A 235 GLU A 239 5 5 HELIX 7 7 PRO A 247 ALA A 254 1 8 HELIX 8 8 CYS A 255 GLY A 263 1 9 HELIX 9 9 PRO A 265 GLU A 267 5 3 SHEET 1 A 6 ASN A 59 TYR A 65 0 SHEET 2 A 6 HIS A 49 ILE A 56 -1 N LEU A 52 O ARG A 63 SHEET 3 A 6 THR A 110 ASN A 117 -1 O ASN A 117 N HIS A 49 SHEET 4 A 6 TYR A 14 VAL A 23 -1 N TYR A 14 O PHE A 113 SHEET 5 A 6 THR A 28 ALA A 34 -1 O ARG A 30 N GLU A 22 SHEET 6 A 6 PHE A 76 LYS A 82 -1 O ILE A 81 N ARG A 29 SHEET 1 B 3 LEU A 120 GLY A 124 0 SHEET 2 B 3 LYS A 127 ILE A 130 -1 O LYS A 127 N GLN A 123 SHEET 3 B 3 VAL A 139 THR A 142 -1 O LYS A 141 N PHE A 128 SHEET 1 C 6 SER A 220 GLN A 221 0 SHEET 2 C 6 PHE A 204 VAL A 210 1 N TYR A 208 O SER A 220 SHEET 3 C 6 VAL A 174 ASN A 181 1 N LEU A 177 O LYS A 205 SHEET 4 C 6 SER A 145 GLY A 151 1 N ALA A 150 O ALA A 180 SHEET 5 C 6 LEU A 241 CYS A 245 1 O LEU A 243 N GLY A 147 SHEET 6 C 6 CYS A 269 ALA A 271 1 O PHE A 270 N VAL A 242 CISPEP 1 GLY A 115 PRO A 116 0 -2.79 SITE 1 AC1 29 ARG A 63 PRO A 64 TYR A 65 THR A 66 SITE 2 AC1 29 VAL A 80 ILE A 81 LYS A 82 TYR A 84 SITE 3 AC1 29 PHE A 85 PHE A 92 GLY A 95 GLY A 96 SITE 4 AC1 29 LYS A 97 MET A 98 SER A 99 THR A 153 SITE 5 AC1 29 THR A 156 NAD A 302 HOH A 401 HOH A 402 SITE 6 AC1 29 HOH A 405 HOH A 408 HOH A 409 HOH A 420 SITE 7 AC1 29 HOH A 453 HOH A 538 HOH A 570 HOH A 588 SITE 8 AC1 29 HOH A 665 SITE 1 AC2 30 LYS A 82 TYR A 84 GLY A 152 THR A 153 SITE 2 AC2 30 GLY A 154 ALA A 180 ASN A 181 GLN A 182 SITE 3 AC2 30 ASP A 211 PHE A 223 CYS A 245 GLY A 246 SITE 4 AC2 30 PRO A 247 PRO A 248 PRO A 249 MET A 250 SITE 5 AC2 30 PHE A 272 FAD A 301 HOH A 408 HOH A 410 SITE 6 AC2 30 HOH A 421 HOH A 425 HOH A 432 HOH A 448 SITE 7 AC2 30 HOH A 502 HOH A 580 HOH A 594 HOH A 599 SITE 8 AC2 30 HOH A 640 HOH A 652 CRYST1 57.456 73.014 85.621 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011679 0.00000