HEADER HYDROLASE 06-DEC-12 3W2Y TITLE CRYSTAL STRUCTURE OF DNA URIDINE ENDONUCLEASE MTH212 MUTANT W205S COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE; COMPND 3 CHAIN: A, D; COMPND 4 EC: 3.1.11.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 STRAIN: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H; SOURCE 5 GENE: MTH212, MTH_212; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA/BETA-SANDWICH, HYDROLASE, DNA BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.TABATA,T.SHIDA,R.ARAI REVDAT 3 08-NOV-23 3W2Y 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 3W2Y 1 REMARK REVDAT 1 11-DEC-13 3W2Y 0 JRNL AUTH N.TABATA,T.SHIDA,R.ARAI JRNL TITL CRYSTAL STRUCTURE OF DNA URIDINE ENDONUCLEASE MTH212 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 64530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4477 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6007 ; 1.133 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 6.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;35.132 ;22.798 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 772 ;14.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;15.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3483 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2579 ; 0.394 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4167 ; 0.767 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1898 ; 1.384 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1840 ; 2.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7140 20.6350 -3.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0429 REMARK 3 T33: 0.0824 T12: 0.0001 REMARK 3 T13: -0.0218 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.2730 L22: 3.4672 REMARK 3 L33: 3.4071 L12: 0.9536 REMARK 3 L13: -0.3082 L23: 0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: 0.0074 S13: -0.1113 REMARK 3 S21: -0.1693 S22: 0.0335 S23: -0.0941 REMARK 3 S31: 0.0744 S32: 0.0724 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2580 14.6360 -3.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0874 REMARK 3 T33: 0.1767 T12: 0.0016 REMARK 3 T13: -0.0124 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 6.4134 L22: 6.0412 REMARK 3 L33: 7.9719 L12: 0.0887 REMARK 3 L13: -2.3885 L23: -2.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0303 S13: -0.2287 REMARK 3 S21: -0.0223 S22: 0.1098 S23: -0.2751 REMARK 3 S31: 0.0858 S32: 0.3332 S33: -0.0999 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1830 21.1950 -11.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1287 REMARK 3 T33: 0.1277 T12: -0.0353 REMARK 3 T13: -0.0173 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.8952 L22: 3.3718 REMARK 3 L33: 1.7394 L12: 1.2215 REMARK 3 L13: 0.0607 L23: 1.1164 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: 0.2610 S13: -0.0601 REMARK 3 S21: -0.5403 S22: 0.2027 S23: -0.0949 REMARK 3 S31: -0.1876 S32: 0.1540 S33: -0.0417 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7850 12.2030 -13.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.1265 REMARK 3 T33: 0.1885 T12: -0.0115 REMARK 3 T13: 0.0453 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 6.9206 L22: 2.8093 REMARK 3 L33: 16.7521 L12: 2.0135 REMARK 3 L13: -6.0486 L23: -2.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.5629 S13: -0.2886 REMARK 3 S21: -0.4945 S22: 0.1782 S23: -0.2337 REMARK 3 S31: -0.2426 S32: 0.0759 S33: -0.1510 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6330 24.7670 -14.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1382 REMARK 3 T33: 0.1123 T12: -0.0313 REMARK 3 T13: -0.0128 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 3.0238 L22: 7.1303 REMARK 3 L33: 2.8174 L12: 2.7895 REMARK 3 L13: 0.0865 L23: 0.5194 REMARK 3 S TENSOR REMARK 3 S11: -0.2051 S12: 0.2864 S13: 0.0766 REMARK 3 S21: -0.7206 S22: 0.2030 S23: -0.0983 REMARK 3 S31: -0.0986 S32: 0.0448 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9680 27.7140 -9.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.0793 REMARK 3 T33: 0.0788 T12: 0.0014 REMARK 3 T13: -0.0401 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.8691 L22: 3.6950 REMARK 3 L33: 1.2850 L12: 0.4175 REMARK 3 L13: 0.2802 L23: 0.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: 0.1215 S13: 0.0920 REMARK 3 S21: -0.2803 S22: 0.0071 S23: 0.0926 REMARK 3 S31: -0.2245 S32: -0.0361 S33: 0.0928 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0750 32.7690 -3.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0906 REMARK 3 T33: 0.0462 T12: 0.0303 REMARK 3 T13: -0.0546 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 3.6393 L22: 7.3619 REMARK 3 L33: 2.6200 L12: 2.3309 REMARK 3 L13: 0.1914 L23: 0.7589 REMARK 3 S TENSOR REMARK 3 S11: -0.1146 S12: 0.1432 S13: 0.0699 REMARK 3 S21: -0.2731 S22: -0.0251 S23: -0.0718 REMARK 3 S31: -0.2184 S32: 0.0760 S33: 0.1396 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1070 42.4880 -4.5680 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.0659 REMARK 3 T33: 0.1416 T12: 0.0333 REMARK 3 T13: -0.0960 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 6.3257 L22: 4.5190 REMARK 3 L33: 2.7537 L12: 3.6072 REMARK 3 L13: -0.5565 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.1941 S13: 0.4911 REMARK 3 S21: -0.3778 S22: -0.0090 S23: 0.2501 REMARK 3 S31: -0.4483 S32: -0.0555 S33: 0.1739 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -26.7880 30.2260 1.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.1330 REMARK 3 T33: 0.1029 T12: 0.0092 REMARK 3 T13: -0.0368 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 5.6003 L22: 2.5383 REMARK 3 L33: 0.7215 L12: 1.6123 REMARK 3 L13: 0.0985 L23: 0.3185 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.1444 S13: -0.0004 REMARK 3 S21: -0.0684 S22: -0.0924 S23: 0.2960 REMARK 3 S31: -0.0892 S32: -0.2034 S33: 0.1686 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7110 41.9810 10.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0673 REMARK 3 T33: 0.1679 T12: -0.0276 REMARK 3 T13: -0.0454 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 2.2957 L22: 3.9585 REMARK 3 L33: 3.4477 L12: -1.9277 REMARK 3 L13: 0.3597 L23: -0.1053 REMARK 3 S TENSOR REMARK 3 S11: -0.0779 S12: -0.0937 S13: 0.4902 REMARK 3 S21: 0.1056 S22: -0.0367 S23: -0.2750 REMARK 3 S31: -0.3303 S32: 0.1724 S33: 0.1146 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7290 35.7070 9.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0902 REMARK 3 T33: 0.0815 T12: -0.0103 REMARK 3 T13: -0.0237 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.8341 L22: 1.0000 REMARK 3 L33: 0.9156 L12: 0.0558 REMARK 3 L13: 0.4200 L23: 0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: -0.1199 S13: 0.1114 REMARK 3 S21: 0.0135 S22: -0.0498 S23: 0.1014 REMARK 3 S31: -0.1091 S32: -0.0389 S33: 0.0710 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4740 34.1500 0.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.5543 REMARK 3 T33: 0.1788 T12: -0.0892 REMARK 3 T13: 0.0369 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 30.0779 L22: 0.2275 REMARK 3 L33: 7.7993 L12: 3.4795 REMARK 3 L13: 12.5406 L23: -3.4914 REMARK 3 S TENSOR REMARK 3 S11: -0.4972 S12: 3.2182 S13: 0.5252 REMARK 3 S21: -0.0477 S22: 0.1277 S23: -0.1480 REMARK 3 S31: -0.1125 S32: 1.6744 S33: 0.3695 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9730 31.2300 7.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0524 REMARK 3 T33: 0.0632 T12: -0.0159 REMARK 3 T13: -0.0117 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.9653 L22: 1.4952 REMARK 3 L33: 0.8225 L12: 1.0150 REMARK 3 L13: 0.8723 L23: 0.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.0127 S13: 0.0348 REMARK 3 S21: 0.0177 S22: -0.0508 S23: -0.0014 REMARK 3 S31: -0.0473 S32: 0.0504 S33: 0.0972 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0010 21.3160 7.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0540 REMARK 3 T33: 0.1068 T12: -0.0113 REMARK 3 T13: -0.0049 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.8881 L22: 1.2662 REMARK 3 L33: 3.0525 L12: -0.1571 REMARK 3 L13: -1.1601 L23: 0.6440 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.2995 S13: -0.3966 REMARK 3 S21: 0.1178 S22: -0.0846 S23: 0.0689 REMARK 3 S31: 0.1762 S32: 0.0349 S33: 0.1303 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 19 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8230 44.1720 26.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2466 REMARK 3 T33: 0.2103 T12: -0.0159 REMARK 3 T13: 0.0624 T23: -0.1591 REMARK 3 L TENSOR REMARK 3 L11: 1.6932 L22: 3.5050 REMARK 3 L33: 2.3610 L12: -0.8910 REMARK 3 L13: 0.7244 L23: 1.6801 REMARK 3 S TENSOR REMARK 3 S11: -0.1320 S12: -0.2813 S13: 0.1221 REMARK 3 S21: 0.5633 S22: -0.2103 S23: 0.3262 REMARK 3 S31: 0.3547 S32: -0.4885 S33: 0.3422 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 20 D 31 REMARK 3 ORIGIN FOR THE GROUP (A): -33.8560 39.0090 30.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.6289 T22: 0.6946 REMARK 3 T33: 0.4000 T12: -0.3973 REMARK 3 T13: 0.3049 T23: -0.3230 REMARK 3 L TENSOR REMARK 3 L11: 3.9459 L22: 9.5246 REMARK 3 L33: 7.4906 L12: -5.6345 REMARK 3 L13: -1.0007 L23: 4.5083 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.3815 S13: -0.4415 REMARK 3 S21: 1.2795 S22: -0.5739 S23: 0.9880 REMARK 3 S31: 1.1792 S32: -1.0500 S33: 0.7725 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 32 D 44 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2460 47.8730 20.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.2757 REMARK 3 T33: 0.3063 T12: 0.0597 REMARK 3 T13: -0.0215 T23: -0.2075 REMARK 3 L TENSOR REMARK 3 L11: 0.8846 L22: 3.9500 REMARK 3 L33: 6.9266 L12: -0.7529 REMARK 3 L13: -1.7045 L23: 2.4613 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.0382 S13: 0.1063 REMARK 3 S21: 0.1115 S22: -0.4167 S23: 0.5616 REMARK 3 S31: -0.0839 S32: -0.7498 S33: 0.4719 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 45 D 57 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8510 43.7500 20.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.6265 REMARK 3 T33: 0.4686 T12: -0.0527 REMARK 3 T13: 0.0429 T23: -0.3830 REMARK 3 L TENSOR REMARK 3 L11: 9.0820 L22: 5.3523 REMARK 3 L33: 19.2104 L12: 0.4281 REMARK 3 L13: -1.8294 L23: 5.8124 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 0.0365 S13: 0.0559 REMARK 3 S21: 0.1509 S22: -0.9970 S23: 1.1143 REMARK 3 S31: 0.6103 S32: -2.4959 S33: 1.0916 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 58 D 65 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0090 52.6280 14.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.4627 REMARK 3 T33: 0.5255 T12: 0.3128 REMARK 3 T13: -0.3406 T23: -0.4420 REMARK 3 L TENSOR REMARK 3 L11: 9.4657 L22: 7.4475 REMARK 3 L33: 25.4336 L12: -1.4540 REMARK 3 L13: -11.5694 L23: 2.5700 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.8904 S13: 0.0735 REMARK 3 S21: -1.0880 S22: -1.3244 S23: 0.9210 REMARK 3 S31: -1.4483 S32: -1.8099 S33: 1.3708 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 66 D 73 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9540 50.0230 15.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.2045 REMARK 3 T33: 0.2461 T12: 0.0438 REMARK 3 T13: -0.0778 T23: -0.1429 REMARK 3 L TENSOR REMARK 3 L11: 7.8109 L22: 4.2626 REMARK 3 L33: 13.3139 L12: -2.2969 REMARK 3 L13: -6.9499 L23: 4.9227 REMARK 3 S TENSOR REMARK 3 S11: -0.3208 S12: 0.4922 S13: 0.0877 REMARK 3 S21: -0.2284 S22: -0.2952 S23: 0.3852 REMARK 3 S31: -0.0933 S32: -0.8355 S33: 0.6160 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 74 D 91 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0900 59.9230 20.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2922 REMARK 3 T33: 0.4604 T12: 0.2391 REMARK 3 T13: -0.2808 T23: -0.3240 REMARK 3 L TENSOR REMARK 3 L11: 8.6663 L22: 5.1023 REMARK 3 L33: 6.4983 L12: 1.1709 REMARK 3 L13: -0.0863 L23: 0.5547 REMARK 3 S TENSOR REMARK 3 S11: -0.5863 S12: -0.1766 S13: 1.1545 REMARK 3 S21: -0.2723 S22: -0.2817 S23: 0.4880 REMARK 3 S31: -0.8183 S32: -0.9858 S33: 0.8680 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 92 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4100 59.3100 20.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.0887 REMARK 3 T33: 0.2980 T12: 0.0743 REMARK 3 T13: -0.1392 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 3.6077 L22: 3.1204 REMARK 3 L33: 3.2649 L12: -1.4148 REMARK 3 L13: -0.6561 L23: 2.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: -0.0780 S13: 0.4902 REMARK 3 S21: -0.1801 S22: -0.0324 S23: -0.1067 REMARK 3 S31: -0.4323 S32: -0.1686 S33: 0.2212 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 137 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6420 67.1500 30.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.2485 REMARK 3 T33: 0.4572 T12: 0.2381 REMARK 3 T13: -0.2685 T23: -0.3271 REMARK 3 L TENSOR REMARK 3 L11: 2.0303 L22: 10.3733 REMARK 3 L33: 3.8449 L12: -1.1085 REMARK 3 L13: 1.2108 L23: 0.4916 REMARK 3 S TENSOR REMARK 3 S11: -0.4709 S12: -0.4298 S13: 0.5008 REMARK 3 S21: 0.0280 S22: -0.1605 S23: -0.2195 REMARK 3 S31: -0.7324 S32: -0.5799 S33: 0.6314 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 151 D 183 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1290 53.2360 27.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1916 REMARK 3 T33: 0.3375 T12: 0.0965 REMARK 3 T13: -0.1600 T23: -0.2273 REMARK 3 L TENSOR REMARK 3 L11: 2.2864 L22: 4.6331 REMARK 3 L33: 3.7724 L12: -1.0553 REMARK 3 L13: 0.2324 L23: 1.4683 REMARK 3 S TENSOR REMARK 3 S11: -0.2147 S12: -0.2121 S13: 0.5045 REMARK 3 S21: 0.2041 S22: 0.4601 S23: -0.6924 REMARK 3 S31: 0.0763 S32: 0.5266 S33: -0.2454 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 184 D 210 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0360 50.5570 34.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.2393 REMARK 3 T33: 0.1953 T12: 0.1563 REMARK 3 T13: -0.1324 T23: -0.1831 REMARK 3 L TENSOR REMARK 3 L11: 1.8087 L22: 6.6522 REMARK 3 L33: 1.7937 L12: -1.2387 REMARK 3 L13: -0.7511 L23: 3.4679 REMARK 3 S TENSOR REMARK 3 S11: -0.3730 S12: -0.4554 S13: 0.3066 REMARK 3 S21: 0.5477 S22: 0.4043 S23: -0.2075 REMARK 3 S31: 0.2850 S32: 0.1577 S33: -0.0312 REMARK 3 REMARK 3 TLS GROUP : 26 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 211 D 229 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8100 47.8190 31.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.1865 REMARK 3 T33: 0.1638 T12: 0.1174 REMARK 3 T13: -0.1153 T23: -0.1445 REMARK 3 L TENSOR REMARK 3 L11: 2.9306 L22: 5.3995 REMARK 3 L33: 2.5840 L12: -2.7879 REMARK 3 L13: -1.2927 L23: 1.6647 REMARK 3 S TENSOR REMARK 3 S11: -0.2608 S12: -0.2419 S13: 0.2633 REMARK 3 S21: 0.5719 S22: 0.1794 S23: -0.3231 REMARK 3 S31: 0.4965 S32: 0.0447 S33: 0.0814 REMARK 3 REMARK 3 TLS GROUP : 27 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 230 D 257 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6350 49.1040 36.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.4277 T22: 0.2675 REMARK 3 T33: 0.1548 T12: 0.0776 REMARK 3 T13: 0.0324 T23: -0.1640 REMARK 3 L TENSOR REMARK 3 L11: 0.9722 L22: 9.2589 REMARK 3 L33: 7.1430 L12: -0.9142 REMARK 3 L13: 0.3085 L23: 5.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.3918 S12: -0.3591 S13: 0.0574 REMARK 3 S21: 1.4311 S22: -0.1246 S23: 0.5684 REMARK 3 S31: 0.8600 S32: -0.4890 S33: 0.5165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FZI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG3350, 50MM MAGNESIUM FORMATE REMARK 280 DIHYDRATE, 11.5MM URACIL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.46533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.23267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.34900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.11633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.58167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 210 O HOH A 616 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 -140.88 56.05 REMARK 500 ASP A 103 -66.14 83.17 REMARK 500 PHE A 173 30.42 -147.09 REMARK 500 ARG A 211 -10.98 76.54 REMARK 500 GLU D 38 65.21 61.20 REMARK 500 SER D 69 -138.34 50.57 REMARK 500 ASP D 103 -62.22 74.58 REMARK 500 PHE D 173 26.02 -151.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 12 OD1 REMARK 620 2 GLU A 38 OE2 96.1 REMARK 620 3 HOH A 411 O 96.6 93.0 REMARK 620 4 HOH A 468 O 167.8 93.3 90.5 REMARK 620 5 HOH A 509 O 85.4 173.7 92.9 84.4 REMARK 620 6 HOH A 590 O 87.8 86.6 175.5 85.0 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 12 OD1 REMARK 620 2 GLU D 38 OE2 85.2 REMARK 620 3 HOH D 407 O 87.7 91.6 REMARK 620 4 HOH D 425 O 86.8 86.7 174.3 REMARK 620 5 HOH D 430 O 93.3 178.4 88.7 92.9 REMARK 620 6 HOH D 449 O 172.5 87.3 92.6 92.7 94.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W2X RELATED DB: PDB REMARK 900 THE WILD TYPE ENZYME DBREF 3W2Y A 1 257 UNP O26314 O26314_METTH 1 257 DBREF 3W2Y D 1 257 UNP O26314 O26314_METTH 1 257 SEQADV 3W2Y GLY A -2 UNP O26314 EXPRESSION TAG SEQADV 3W2Y SER A -1 UNP O26314 EXPRESSION TAG SEQADV 3W2Y HIS A 0 UNP O26314 EXPRESSION TAG SEQADV 3W2Y SER A 205 UNP O26314 TRP 205 ENGINEERED MUTATION SEQADV 3W2Y GLY D -2 UNP O26314 EXPRESSION TAG SEQADV 3W2Y SER D -1 UNP O26314 EXPRESSION TAG SEQADV 3W2Y HIS D 0 UNP O26314 EXPRESSION TAG SEQADV 3W2Y SER D 205 UNP O26314 TRP 205 ENGINEERED MUTATION SEQRES 1 A 260 GLY SER HIS MET THR VAL LEU LYS ILE ILE SER TRP ASN SEQRES 2 A 260 VAL ASN GLY LEU ARG ALA VAL HIS ARG LYS GLY PHE LEU SEQRES 3 A 260 LYS TRP PHE MET GLU GLU LYS PRO ASP ILE LEU CYS LEU SEQRES 4 A 260 GLN GLU ILE LYS ALA ALA PRO GLU GLN LEU PRO ARG LYS SEQRES 5 A 260 LEU ARG HIS VAL GLU GLY TYR ARG SER PHE PHE THR PRO SEQRES 6 A 260 ALA GLU ARG LYS GLY TYR SER GLY VAL ALA MET TYR THR SEQRES 7 A 260 LYS VAL PRO PRO SER SER LEU ARG GLU GLY PHE GLY VAL SEQRES 8 A 260 GLU ARG PHE ASP THR GLU GLY ARG ILE GLN ILE ALA ASP SEQRES 9 A 260 PHE ASP ASP PHE LEU LEU TYR ASN ILE TYR PHE PRO ASN SEQRES 10 A 260 GLY LYS MET SER GLU GLU ARG LEU LYS TYR LYS LEU GLU SEQRES 11 A 260 PHE TYR ASP ALA PHE LEU GLU ASP VAL ASN ARG GLU ARG SEQRES 12 A 260 ASP SER GLY ARG ASN VAL ILE ILE CYS GLY ASP PHE ASN SEQRES 13 A 260 THR ALA HIS ARG GLU ILE ASP LEU ALA ARG PRO LYS GLU SEQRES 14 A 260 ASN SER ASN VAL SER GLY PHE LEU PRO VAL GLU ARG ALA SEQRES 15 A 260 TRP ILE ASP LYS PHE ILE GLU ASN GLY TYR VAL ASP THR SEQRES 16 A 260 PHE ARG MET PHE ASN SER ASP PRO GLY GLN TYR THR SER SEQRES 17 A 260 TRP SER TYR ARG THR ARG ALA ARG GLU ARG ASN VAL GLY SEQRES 18 A 260 TRP ARG LEU ASP TYR PHE PHE VAL ASN GLU GLU PHE LYS SEQRES 19 A 260 GLY LYS VAL LYS ARG SER TRP ILE LEU SER ASP VAL MET SEQRES 20 A 260 GLY SER ASP HIS CYS PRO ILE GLY LEU GLU ILE GLU LEU SEQRES 1 D 260 GLY SER HIS MET THR VAL LEU LYS ILE ILE SER TRP ASN SEQRES 2 D 260 VAL ASN GLY LEU ARG ALA VAL HIS ARG LYS GLY PHE LEU SEQRES 3 D 260 LYS TRP PHE MET GLU GLU LYS PRO ASP ILE LEU CYS LEU SEQRES 4 D 260 GLN GLU ILE LYS ALA ALA PRO GLU GLN LEU PRO ARG LYS SEQRES 5 D 260 LEU ARG HIS VAL GLU GLY TYR ARG SER PHE PHE THR PRO SEQRES 6 D 260 ALA GLU ARG LYS GLY TYR SER GLY VAL ALA MET TYR THR SEQRES 7 D 260 LYS VAL PRO PRO SER SER LEU ARG GLU GLY PHE GLY VAL SEQRES 8 D 260 GLU ARG PHE ASP THR GLU GLY ARG ILE GLN ILE ALA ASP SEQRES 9 D 260 PHE ASP ASP PHE LEU LEU TYR ASN ILE TYR PHE PRO ASN SEQRES 10 D 260 GLY LYS MET SER GLU GLU ARG LEU LYS TYR LYS LEU GLU SEQRES 11 D 260 PHE TYR ASP ALA PHE LEU GLU ASP VAL ASN ARG GLU ARG SEQRES 12 D 260 ASP SER GLY ARG ASN VAL ILE ILE CYS GLY ASP PHE ASN SEQRES 13 D 260 THR ALA HIS ARG GLU ILE ASP LEU ALA ARG PRO LYS GLU SEQRES 14 D 260 ASN SER ASN VAL SER GLY PHE LEU PRO VAL GLU ARG ALA SEQRES 15 D 260 TRP ILE ASP LYS PHE ILE GLU ASN GLY TYR VAL ASP THR SEQRES 16 D 260 PHE ARG MET PHE ASN SER ASP PRO GLY GLN TYR THR SER SEQRES 17 D 260 TRP SER TYR ARG THR ARG ALA ARG GLU ARG ASN VAL GLY SEQRES 18 D 260 TRP ARG LEU ASP TYR PHE PHE VAL ASN GLU GLU PHE LYS SEQRES 19 D 260 GLY LYS VAL LYS ARG SER TRP ILE LEU SER ASP VAL MET SEQRES 20 D 260 GLY SER ASP HIS CYS PRO ILE GLY LEU GLU ILE GLU LEU HET MG A 301 1 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET PEG A 307 7 HET PEG A 308 7 HET FMT A 309 3 HET PEG A 310 7 HET FMT A 311 3 HET FMT A 312 3 HET FMT A 313 3 HET MG D 301 1 HET FMT D 302 3 HET FMT D 303 3 HET FMT D 304 3 HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 MG 2(MG 2+) FORMUL 4 FMT 12(C H2 O2) FORMUL 9 PEG 3(C4 H10 O3) FORMUL 20 HOH *381(H2 O) HELIX 1 1 GLY A 13 ARG A 19 1 7 HELIX 2 2 GLY A 21 LYS A 30 1 10 HELIX 3 3 ALA A 42 LEU A 46 5 5 HELIX 4 4 PRO A 47 HIS A 52 1 6 HELIX 5 5 VAL A 88 THR A 93 1 6 HELIX 6 6 SER A 118 SER A 142 1 25 HELIX 7 7 ARG A 157 LEU A 161 5 5 HELIX 8 8 ARG A 163 SER A 168 1 6 HELIX 9 9 LEU A 174 ASN A 187 1 14 HELIX 10 10 THR A 192 ASN A 197 1 6 HELIX 11 11 GLU A 229 GLY A 232 5 4 HELIX 12 12 GLY D 13 ARG D 19 1 7 HELIX 13 13 GLY D 21 LYS D 30 1 10 HELIX 14 14 ALA D 42 LEU D 46 5 5 HELIX 15 15 PRO D 47 HIS D 52 1 6 HELIX 16 16 VAL D 88 THR D 93 1 6 HELIX 17 17 SER D 118 SER D 142 1 25 HELIX 18 18 ARG D 157 LEU D 161 5 5 HELIX 19 19 LEU D 174 ASN D 187 1 14 HELIX 20 20 THR D 192 ASN D 197 1 6 HELIX 21 21 GLU D 229 GLY D 232 5 4 SHEET 1 A 6 ARG A 57 THR A 61 0 SHEET 2 A 6 VAL A 71 THR A 75 -1 O THR A 75 N ARG A 57 SHEET 3 A 6 ILE A 33 GLN A 37 -1 N LEU A 34 O TYR A 74 SHEET 4 A 6 VAL A 3 ASN A 10 1 N ILE A 7 O CYS A 35 SHEET 5 A 6 ILE A 251 GLU A 256 -1 O ILE A 255 N LEU A 4 SHEET 6 A 6 VAL A 234 ILE A 239 -1 N LYS A 235 O GLU A 254 SHEET 1 B 6 LEU A 82 ARG A 83 0 SHEET 2 B 6 ILE A 97 ASP A 101 -1 O ILE A 99 N ARG A 83 SHEET 3 B 6 LEU A 106 TYR A 111 -1 O ASN A 109 N GLN A 98 SHEET 4 B 6 VAL A 146 ASP A 151 1 O ILE A 147 N TYR A 108 SHEET 5 B 6 ASP A 222 ASN A 227 -1 O PHE A 225 N ILE A 148 SHEET 6 B 6 TYR A 189 ASP A 191 -1 N VAL A 190 O VAL A 226 SHEET 1 C 2 SER A 205 TRP A 206 0 SHEET 2 C 2 GLY A 218 TRP A 219 -1 O TRP A 219 N SER A 205 SHEET 1 D 6 ARG D 57 THR D 61 0 SHEET 2 D 6 VAL D 71 THR D 75 -1 O THR D 75 N ARG D 57 SHEET 3 D 6 ILE D 33 GLN D 37 -1 N LEU D 36 O ALA D 72 SHEET 4 D 6 VAL D 3 ASN D 10 1 N ILE D 7 O CYS D 35 SHEET 5 D 6 ILE D 251 GLU D 256 -1 O ILE D 255 N LEU D 4 SHEET 6 D 6 VAL D 234 ILE D 239 -1 N TRP D 238 O GLY D 252 SHEET 1 E 6 SER D 81 ARG D 83 0 SHEET 2 E 6 ILE D 97 ASP D 101 -1 O ILE D 99 N ARG D 83 SHEET 3 E 6 LEU D 106 TYR D 111 -1 O ASN D 109 N GLN D 98 SHEET 4 E 6 VAL D 146 ASP D 151 1 O ILE D 147 N TYR D 108 SHEET 5 E 6 ASP D 222 ASN D 227 -1 O PHE D 225 N ILE D 148 SHEET 6 E 6 TYR D 189 ASP D 191 -1 N VAL D 190 O VAL D 226 LINK OD1 ASN A 12 MG MG A 301 1555 1555 2.05 LINK OE2 GLU A 38 MG MG A 301 1555 1555 2.12 LINK MG MG A 301 O HOH A 411 1555 1555 2.04 LINK MG MG A 301 O HOH A 468 1555 1555 1.97 LINK MG MG A 301 O HOH A 509 1555 1555 2.11 LINK MG MG A 301 O HOH A 590 1555 1555 1.93 LINK OD1 ASN D 12 MG MG D 301 1555 1555 2.11 LINK OE2 GLU D 38 MG MG D 301 1555 1555 2.16 LINK MG MG D 301 O HOH D 407 1555 1555 1.94 LINK MG MG D 301 O HOH D 425 1555 1555 1.98 LINK MG MG D 301 O HOH D 430 1555 1555 1.96 LINK MG MG D 301 O HOH D 449 1555 1555 2.12 SITE 1 AC1 6 ASN A 12 GLU A 38 HOH A 411 HOH A 468 SITE 2 AC1 6 HOH A 509 HOH A 590 SITE 1 AC2 2 PHE A 86 HOH A 594 SITE 1 AC3 4 LYS A 183 ASN A 187 HOH A 495 GLN D 45 SITE 1 AC4 6 PRO A 43 PHE A 59 PHE A 60 GLU A 214 SITE 2 AC4 6 HOH A 431 HOH A 558 SITE 1 AC5 5 GLU A 158 ARG A 178 HOH A 613 ASN D 114 SITE 2 AC5 5 LYS D 116 SITE 1 AC6 3 ARG A 236 HOH A 447 HOH A 614 SITE 1 AC7 6 LYS A 116 ASN A 153 SER A 171 TRP A 219 SITE 2 AC7 6 HOH A 413 HOH A 579 SITE 1 AC8 4 TYR A 208 MET A 244 GLY A 245 SER A 246 SITE 1 AC9 4 ARG A 194 MET A 195 PHE A 196 SER A 198 SITE 1 BC1 4 LYS A 40 TYR A 68 SER A 69 TYR A 111 SITE 1 BC2 5 ARG A 163 ASN A 167 TRP A 219 HOH A 435 SITE 2 BC2 5 HOH A 479 SITE 1 BC3 6 HIS A 156 ARG A 157 ILE A 185 HOH A 430 SITE 2 BC3 6 HOH A 456 HOH A 581 SITE 1 BC4 6 ASN D 12 GLU D 38 HOH D 407 HOH D 425 SITE 2 BC4 6 HOH D 430 HOH D 449 SITE 1 BC5 6 ARG D 157 GLU D 158 ILE D 159 ARG D 178 SITE 2 BC5 6 HOH D 525 HOH D 535 SITE 1 BC6 2 MET D 195 SER D 198 CRYST1 100.295 100.295 144.698 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009971 0.005757 0.000000 0.00000 SCALE2 0.000000 0.011513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006911 0.00000