HEADER OXIDOREDUCTASE 11-DEC-12 3W35 TITLE CRYSTAL STRUCTURE OF APO-TYPE BACTERIAL VANADIUM-DEPENDENT TITLE 2 CHLOROPEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAPH1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VANADIUM-DEPENDENT CHLOROPEROXIDASE; COMPND 5 EC: 1.11.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 3 ORGANISM_TAXID: 445602; SOURCE 4 STRAIN: CNQ525; SOURCE 5 GENE: NAPH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHLOROPEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.K.LISCOMBE,A.MIYANAGA,E.FIELDING,P.BERNHARDT,A.LI,J.M.WINTER, AUTHOR 2 M.K.GILSON,J.P.NOEL,B.S.MOORE REVDAT 2 31-AUG-22 3W35 1 JRNL SEQADV REVDAT 1 11-DEC-13 3W35 0 JRNL AUTH P.Y.CHEN,S.ADAK,J.R.CHEKAN,D.K.LISCOMBE,A.MIYANAGA, JRNL AUTH 2 P.BERNHARDT,S.DIETHELM,E.N.FIELDING,J.H.GEORGE,Z.D.MILES, JRNL AUTH 3 L.A.M.MURRAY,T.S.STEELE,J.M.WINTER,J.P.NOEL,B.S.MOORE JRNL TITL STRUCTURAL BASIS OF STEREOSPECIFIC VANADIUM-DEPENDENT JRNL TITL 2 HALOPEROXIDASE FAMILY ENZYMES IN NAPYRADIOMYCIN JRNL TITL 3 BIOSYNTHESIS. JRNL REF BIOCHEMISTRY 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 35985031 JRNL DOI 10.1021/ACS.BIOCHEM.2C00338 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 47226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.238 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7535 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6922 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10274 ; 1.800 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15849 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 918 ; 8.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;31.691 ;23.120 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1139 ;18.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;19.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1087 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8690 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 523 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9450 132.9030 1.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.0430 T22: 0.0220 REMARK 3 T33: 0.0155 T12: -0.0002 REMARK 3 T13: 0.0211 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2232 L22: 0.2907 REMARK 3 L33: 0.5820 L12: 0.0733 REMARK 3 L13: -0.1249 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0202 S13: 0.0019 REMARK 3 S21: -0.0801 S22: 0.0073 S23: -0.0500 REMARK 3 S31: 0.0669 S32: 0.0104 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 525 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0990 152.6160 34.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: 0.0091 REMARK 3 T33: 0.0240 T12: -0.0074 REMARK 3 T13: -0.0028 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0128 L22: 0.5620 REMARK 3 L33: 0.2254 L12: -0.0362 REMARK 3 L13: 0.0424 L23: 0.0267 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0022 S13: -0.0055 REMARK 3 S21: -0.0132 S22: -0.0048 S23: 0.0449 REMARK 3 S31: -0.0216 S32: -0.0022 S33: 0.0046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 62.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA, 0.3M AMMONIUM ACETATE, REMARK 280 8% PEG 8000, 2MM DTT, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.85550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.21050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.21050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.85550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 TYR A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 17 REMARK 465 SER A 18 REMARK 465 MET A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 LEU A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 GLY A 34 REMARK 465 PHE A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 PRO A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 ALA A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 PRO A 69 REMARK 465 THR A 70 REMARK 465 ASP A 71 REMARK 465 GLU A 72 REMARK 465 ASN A 73 REMARK 465 ALA A 74 REMARK 465 GLY A 75 REMARK 465 GLN A 76 REMARK 465 SER A 77 REMARK 465 ASP A 524 REMARK 465 VAL A 525 REMARK 465 LYS A 526 REMARK 465 ASP A 527 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 HIS B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 PHE B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 TYR B 12 REMARK 465 SER B 13 REMARK 465 PRO B 14 REMARK 465 ARG B 15 REMARK 465 ARG B 16 REMARK 465 ARG B 17 REMARK 465 SER B 18 REMARK 465 MET B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 21 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 LEU B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 LEU B 30 REMARK 465 SER B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 GLY B 34 REMARK 465 PHE B 35 REMARK 465 THR B 36 REMARK 465 GLY B 37 REMARK 465 MET B 38 REMARK 465 ALA B 39 REMARK 465 SER B 40 REMARK 465 ALA B 41 REMARK 465 SER B 42 REMARK 465 PRO B 43 REMARK 465 ARG B 44 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 ALA B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 LYS B 50 REMARK 465 ALA B 51 REMARK 465 ALA B 52 REMARK 465 ALA B 53 REMARK 465 ILE B 54 REMARK 465 GLU B 55 REMARK 465 THR B 70 REMARK 465 ASP B 71 REMARK 465 GLU B 72 REMARK 465 ASN B 73 REMARK 465 ALA B 74 REMARK 465 GLY B 75 REMARK 465 GLN B 76 REMARK 465 LYS B 526 REMARK 465 ASP B 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 390 OG SER B 409 2.12 REMARK 500 OD1 ASP A 340 O ASN A 343 2.13 REMARK 500 O GLY A 197 OH TYR A 216 2.16 REMARK 500 OD1 ASP A 340 O MET A 345 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 262 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASN B 242 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL B 262 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU B 430 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG B 482 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 -95.93 -82.40 REMARK 500 LEU A 58 -48.13 140.28 REMARK 500 VAL A 90 -60.94 -90.10 REMARK 500 ARG A 122 171.39 -39.82 REMARK 500 PRO A 151 84.87 -51.64 REMARK 500 GLN A 152 106.68 99.35 REMARK 500 LEU A 164 -22.90 174.67 REMARK 500 MET A 198 -45.00 56.12 REMARK 500 TRP A 213 -2.20 69.57 REMARK 500 THR A 263 64.20 35.53 REMARK 500 ASN A 342 94.67 -179.89 REMARK 500 GLU A 344 31.90 30.96 REMARK 500 MET A 345 96.28 153.91 REMARK 500 PRO A 421 159.03 -49.92 REMARK 500 LEU A 447 -58.01 -134.70 REMARK 500 ILE A 464 -54.36 -122.61 REMARK 500 LYS A 468 -108.70 -66.34 REMARK 500 ASP A 469 127.22 166.82 REMARK 500 GLN A 508 -48.76 -21.83 REMARK 500 ALA B 67 35.17 -81.75 REMARK 500 THR B 79 -39.84 90.86 REMARK 500 LEU B 83 -73.89 -89.37 REMARK 500 GLN B 119 74.76 -118.17 REMARK 500 GLN B 152 69.49 -103.12 REMARK 500 GLN B 153 -32.92 -179.96 REMARK 500 VAL B 154 -38.62 -35.20 REMARK 500 ALA B 163 70.29 -69.07 REMARK 500 LEU B 164 -15.16 157.38 REMARK 500 ASN B 199 35.83 72.36 REMARK 500 THR B 263 62.64 31.59 REMARK 500 SER B 331 -16.70 -46.51 REMARK 500 ASN B 342 62.96 -170.85 REMARK 500 MET B 345 101.22 73.02 REMARK 500 SER B 444 147.82 -178.98 REMARK 500 LEU B 447 -46.98 -137.88 REMARK 500 ASP B 469 150.85 -43.40 REMARK 500 ASP B 524 56.79 -98.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 196 GLY A 197 -115.43 REMARK 500 GLU B 344 MET B 345 -149.71 REMARK 500 PRO B 466 GLY B 467 54.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W36 RELATED DB: PDB DBREF 3W35 A 1 527 UNP A7KH27 A7KH27_9ACTO 1 527 DBREF 3W35 B 1 527 UNP A7KH27 A7KH27_9ACTO 1 527 SEQADV 3W35 GLY A -3 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 SER A -2 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 HIS A -1 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 GLY A 0 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 GLY B -3 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 SER B -2 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 HIS B -1 UNP A7KH27 EXPRESSION TAG SEQADV 3W35 GLY B 0 UNP A7KH27 EXPRESSION TAG SEQRES 1 A 531 GLY SER HIS GLY MET THR THR SER GLY HIS THR SER PHE SEQRES 2 A 531 SER ASP TYR SER PRO ARG ARG ARG SER MET LEU LEU GLY SEQRES 3 A 531 GLY LEU GLY GLY ALA ALA ALA LEU SER ALA ALA GLY PHE SEQRES 4 A 531 THR GLY MET ALA SER ALA SER PRO ARG GLY SER ALA GLY SEQRES 5 A 531 SER LYS ALA ALA ALA ILE GLU PHE ASP LEU ASP LYS ASP SEQRES 6 A 531 ASN TYR ILE LYS TRP ALA GLN PRO THR ASP GLU ASN ALA SEQRES 7 A 531 GLY GLN SER PRO THR LEU ALA ILE LEU GLY PRO MET ASP SEQRES 8 A 531 VAL THR VAL PHE LEU TRP ILE ASN ARG VAL VAL TRP LEU SEQRES 9 A 531 ALA ALA PHE ASP ALA LEU ALA PRO TYR HIS GLU THR ALA SEQRES 10 A 531 VAL GLY VAL TYR SER GLN ILE PRO ARG ARG PRO SER SER SEQRES 11 A 531 GLU SER ALA THR ASN ARG ASN LEU ASN ILE ALA ALA LEU SEQRES 12 A 531 HIS ALA GLN HIS GLY VAL TRP LYS ARG VAL LEU PRO GLN SEQRES 13 A 531 GLN VAL ASP GLN LEU ARG GLU LEU MET THR ALA LEU GLY SEQRES 14 A 531 LEU ASP PRO SER ASP GLU THR GLU ASN LEU SER SER PRO SEQRES 15 A 531 VAL GLY ILE GLY ASN VAL ALA ALA LYS ASN ALA PHE ASN SEQRES 16 A 531 ALA LEU LYS ASN ASP GLY MET ASN PHE LEU GLY TYR GLU SEQRES 17 A 531 GLY ARG LYS TYR ASN PRO ARG PRO TRP ALA ASP TYR THR SEQRES 18 A 531 GLY TYR GLU PRO VAL ASN THR ALA PHE LYS VAL ASN ASN SEQRES 19 A 531 PRO SER ARG TRP GLN PRO GLN LEU GLN ALA HIS ASN ALA SEQRES 20 A 531 ARG ARG ALA GLY GLY GLY PRO GLY ASP LEU GLY ILE TYR SEQRES 21 A 531 VAL THR GLN HIS PHE VAL THR PRO GLN THR ALA ARG THR SEQRES 22 A 531 LYS ALA HIS ILE PHE ARG ASP PRO SER ARG PHE ARG ILE SEQRES 23 A 531 PRO ARG PRO GLU PHE SER ASP HIS THR ASN THR ARG ALA SEQRES 24 A 531 TYR LYS ARG SER VAL ASP GLU ILE ILE ASP ALA SER ALA SEQRES 25 A 531 ASN LEU ASN ASP GLU ARG LYS ALA LEU ALA GLU ILE MET SEQRES 26 A 531 GLU ASN LYS LEU TRP GLY ILE GLY HIS SER SER ILE VAL SEQRES 27 A 531 ILE ALA ASN LYS TYR ASP GLN ASN ASN GLU MET GLY VAL SEQRES 28 A 531 HIS GLY TRP CYS HIS TRP MET LEU ALA HIS VAL LEU ALA SEQRES 29 A 531 THR PHE GLU PRO LEU ILE ALA ALA TRP HIS HIS LYS THR SEQRES 30 A 531 ARG PHE ASP ALA VAL ARG PRO VAL THR ALA ILE ARG HIS SEQRES 31 A 531 VAL TYR GLY ASN ARG LYS ILE ARG ALA TRP GLY GLY VAL SEQRES 32 A 531 GLY MET GLY THR VAL ASP ILE ARG ALA SER GLU TRP SER SEQRES 33 A 531 SER TYR LEU PRO VAL GLY ASP HIS PRO GLU TYR PRO SER SEQRES 34 A 531 GLY SER THR SER LEU CYS SER ALA THR SER GLN ALA ALA SEQRES 35 A 531 ARG ARG TYR PHE ASP SER ASP GLU LEU ASP TRP THR ILE SEQRES 36 A 531 ASN TYR PRO ALA GLY SER THR VAL VAL GLU PRO GLY ILE SEQRES 37 A 531 THR PRO GLY LYS ASP LEU SER ILE HIS ILE PRO THR TRP SEQRES 38 A 531 THR ASP PHE THR ARG THR CYS ALA THR SER ARG VAL TRP SEQRES 39 A 531 GLY GLY VAL HIS PHE GLN THR THR VAL ASP ARG THR ILE SEQRES 40 A 531 ASP PHE GLY GLU GLN PHE GLY ASP LEU ALA HIS GLU PHE SEQRES 41 A 531 VAL GLN ARG HIS VAL LYS GLY ASP VAL LYS ASP SEQRES 1 B 531 GLY SER HIS GLY MET THR THR SER GLY HIS THR SER PHE SEQRES 2 B 531 SER ASP TYR SER PRO ARG ARG ARG SER MET LEU LEU GLY SEQRES 3 B 531 GLY LEU GLY GLY ALA ALA ALA LEU SER ALA ALA GLY PHE SEQRES 4 B 531 THR GLY MET ALA SER ALA SER PRO ARG GLY SER ALA GLY SEQRES 5 B 531 SER LYS ALA ALA ALA ILE GLU PHE ASP LEU ASP LYS ASP SEQRES 6 B 531 ASN TYR ILE LYS TRP ALA GLN PRO THR ASP GLU ASN ALA SEQRES 7 B 531 GLY GLN SER PRO THR LEU ALA ILE LEU GLY PRO MET ASP SEQRES 8 B 531 VAL THR VAL PHE LEU TRP ILE ASN ARG VAL VAL TRP LEU SEQRES 9 B 531 ALA ALA PHE ASP ALA LEU ALA PRO TYR HIS GLU THR ALA SEQRES 10 B 531 VAL GLY VAL TYR SER GLN ILE PRO ARG ARG PRO SER SER SEQRES 11 B 531 GLU SER ALA THR ASN ARG ASN LEU ASN ILE ALA ALA LEU SEQRES 12 B 531 HIS ALA GLN HIS GLY VAL TRP LYS ARG VAL LEU PRO GLN SEQRES 13 B 531 GLN VAL ASP GLN LEU ARG GLU LEU MET THR ALA LEU GLY SEQRES 14 B 531 LEU ASP PRO SER ASP GLU THR GLU ASN LEU SER SER PRO SEQRES 15 B 531 VAL GLY ILE GLY ASN VAL ALA ALA LYS ASN ALA PHE ASN SEQRES 16 B 531 ALA LEU LYS ASN ASP GLY MET ASN PHE LEU GLY TYR GLU SEQRES 17 B 531 GLY ARG LYS TYR ASN PRO ARG PRO TRP ALA ASP TYR THR SEQRES 18 B 531 GLY TYR GLU PRO VAL ASN THR ALA PHE LYS VAL ASN ASN SEQRES 19 B 531 PRO SER ARG TRP GLN PRO GLN LEU GLN ALA HIS ASN ALA SEQRES 20 B 531 ARG ARG ALA GLY GLY GLY PRO GLY ASP LEU GLY ILE TYR SEQRES 21 B 531 VAL THR GLN HIS PHE VAL THR PRO GLN THR ALA ARG THR SEQRES 22 B 531 LYS ALA HIS ILE PHE ARG ASP PRO SER ARG PHE ARG ILE SEQRES 23 B 531 PRO ARG PRO GLU PHE SER ASP HIS THR ASN THR ARG ALA SEQRES 24 B 531 TYR LYS ARG SER VAL ASP GLU ILE ILE ASP ALA SER ALA SEQRES 25 B 531 ASN LEU ASN ASP GLU ARG LYS ALA LEU ALA GLU ILE MET SEQRES 26 B 531 GLU ASN LYS LEU TRP GLY ILE GLY HIS SER SER ILE VAL SEQRES 27 B 531 ILE ALA ASN LYS TYR ASP GLN ASN ASN GLU MET GLY VAL SEQRES 28 B 531 HIS GLY TRP CYS HIS TRP MET LEU ALA HIS VAL LEU ALA SEQRES 29 B 531 THR PHE GLU PRO LEU ILE ALA ALA TRP HIS HIS LYS THR SEQRES 30 B 531 ARG PHE ASP ALA VAL ARG PRO VAL THR ALA ILE ARG HIS SEQRES 31 B 531 VAL TYR GLY ASN ARG LYS ILE ARG ALA TRP GLY GLY VAL SEQRES 32 B 531 GLY MET GLY THR VAL ASP ILE ARG ALA SER GLU TRP SER SEQRES 33 B 531 SER TYR LEU PRO VAL GLY ASP HIS PRO GLU TYR PRO SER SEQRES 34 B 531 GLY SER THR SER LEU CYS SER ALA THR SER GLN ALA ALA SEQRES 35 B 531 ARG ARG TYR PHE ASP SER ASP GLU LEU ASP TRP THR ILE SEQRES 36 B 531 ASN TYR PRO ALA GLY SER THR VAL VAL GLU PRO GLY ILE SEQRES 37 B 531 THR PRO GLY LYS ASP LEU SER ILE HIS ILE PRO THR TRP SEQRES 38 B 531 THR ASP PHE THR ARG THR CYS ALA THR SER ARG VAL TRP SEQRES 39 B 531 GLY GLY VAL HIS PHE GLN THR THR VAL ASP ARG THR ILE SEQRES 40 B 531 ASP PHE GLY GLU GLN PHE GLY ASP LEU ALA HIS GLU PHE SEQRES 41 B 531 VAL GLN ARG HIS VAL LYS GLY ASP VAL LYS ASP FORMUL 3 HOH *227(H2 O) HELIX 1 1 ASN A 62 ALA A 67 1 6 HELIX 2 2 THR A 79 GLY A 84 1 6 HELIX 3 3 ASP A 87 ALA A 107 1 21 HELIX 4 4 PRO A 108 HIS A 110 5 3 HELIX 5 5 PRO A 124 ALA A 129 5 6 HELIX 6 6 ASN A 131 LEU A 150 1 20 HELIX 7 7 VAL A 154 ALA A 163 1 10 HELIX 8 8 SER A 177 LYS A 194 1 18 HELIX 9 9 THR A 263 THR A 269 5 7 HELIX 10 10 ASP A 276 PHE A 280 5 5 HELIX 11 11 PRO A 285 ASP A 289 5 5 HELIX 12 12 ASN A 292 ASN A 309 1 18 HELIX 13 13 ASN A 311 ASN A 323 1 13 HELIX 14 14 ASN A 323 TYR A 339 1 17 HELIX 15 15 GLY A 346 ASP A 376 1 31 HELIX 16 16 ARG A 379 GLY A 389 1 11 HELIX 17 17 SER A 409 TRP A 411 5 3 HELIX 18 18 SER A 425 ASP A 443 1 19 HELIX 19 19 TRP A 477 GLY A 491 1 15 HELIX 20 20 PHE A 495 GLY A 523 1 29 HELIX 21 21 ASN B 62 ALA B 67 1 6 HELIX 22 22 ASP B 87 ALA B 107 1 21 HELIX 23 23 PRO B 108 HIS B 110 5 3 HELIX 24 24 PRO B 124 ALA B 129 5 6 HELIX 25 25 ASN B 131 LEU B 150 1 20 HELIX 26 26 GLN B 153 ALA B 163 1 11 HELIX 27 27 SER B 177 LYS B 194 1 18 HELIX 28 28 THR B 263 THR B 269 5 7 HELIX 29 29 ASP B 276 PHE B 280 5 5 HELIX 30 30 PRO B 285 ASP B 289 5 5 HELIX 31 31 ASN B 292 LEU B 310 1 19 HELIX 32 32 ASN B 311 ASN B 323 1 13 HELIX 33 33 ASN B 323 ASP B 340 1 18 HELIX 34 34 GLY B 346 ASP B 376 1 31 HELIX 35 35 ARG B 379 GLY B 389 1 11 HELIX 36 36 SER B 425 ASP B 443 1 19 HELIX 37 37 TRP B 477 GLY B 491 1 15 HELIX 38 38 PHE B 495 GLY B 523 1 29 SHEET 1 A 4 LEU A 238 ALA A 240 0 SHEET 2 A 4 TYR A 256 GLN A 259 -1 O VAL A 257 N GLN A 239 SHEET 3 A 4 TYR B 256 GLN B 259 -1 O THR B 258 N THR A 258 SHEET 4 A 4 LEU B 238 ALA B 240 -1 N GLN B 239 O VAL B 257 SHEET 1 B 2 LYS A 392 TRP A 396 0 SHEET 2 B 2 THR A 403 ARG A 407 -1 O VAL A 404 N ALA A 395 SHEET 1 C 2 GLU A 446 TYR A 453 0 SHEET 2 C 2 LEU A 470 THR A 476 -1 O ILE A 472 N ILE A 451 SHEET 1 D 2 LYS B 392 TRP B 396 0 SHEET 2 D 2 THR B 403 ARG B 407 -1 O ILE B 406 N ILE B 393 SHEET 1 E 2 GLU B 446 TYR B 453 0 SHEET 2 E 2 LEU B 470 THR B 476 -1 O ILE B 474 N TRP B 449 CISPEP 1 GLN A 152 GLN A 153 0 7.04 CISPEP 2 GLY A 197 MET A 198 0 26.10 CISPEP 3 ASN A 342 ASN A 343 0 -26.39 CISPEP 4 TYR A 423 PRO A 424 0 -4.38 CISPEP 5 THR A 465 PRO A 466 0 -4.89 CISPEP 6 ASN B 342 ASN B 343 0 -18.88 CISPEP 7 MET B 345 GLY B 346 0 22.76 CISPEP 8 TYR B 423 PRO B 424 0 -1.43 CISPEP 9 THR B 465 PRO B 466 0 -17.12 CRYST1 59.711 137.430 156.421 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006393 0.00000