HEADER HYDROLASE 04-JAN-13 3W42 TITLE CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH MANGANESE IN SPACE GROUP P1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE RSBX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SIGMA-B NEGATIVE EFFECTOR; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU04740, RSBX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB11 KEYWDS SIGNALING PROTEIN, STRESSOSOME, ENVIRONMENTAL STRESS, PHOSPHORIC KEYWDS 2 MONOESTER HYDROLASES, DEPHOSPHORYLATION, TERTIARY, PHOSPHATASE, KEYWDS 3 HYDROLASE, PROTEIN PHOSPHATASE, MAGNESIUM/MANGANESE BINDING, ALPHA- KEYWDS 4 BETA BETA-ALPHA SANDWICH FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.H.TEH,M.MAKINO,S.BABA,N.SHIMIZU,M.YAMAMOTO,T.KUMASAKA REVDAT 3 08-NOV-23 3W42 1 REMARK LINK REVDAT 2 01-JUL-15 3W42 1 JRNL REVDAT 1 22-JAN-14 3W42 0 JRNL AUTH A.H.TEH,M.MAKINO,T.HOSHINO,S.BABA,N.SHIMIZU,M.YAMAMOTO, JRNL AUTH 2 T.KUMASAKA JRNL TITL STRUCTURE OF THE RSBX PHOSPHATASE INVOLVED IN THE GENERAL JRNL TITL 2 STRESS RESPONSE OF BACILLUS SUBTILIS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1392 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 26057679 JRNL DOI 10.1107/S1399004715007166 REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 136539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 427 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3553 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2487 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4848 ; 2.216 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6180 ; 1.306 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 7.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;37.558 ;25.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;13.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4044 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 684 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2187 ; 2.266 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 892 ; 0.759 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3580 ; 3.320 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 4.874 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1219 ; 7.089 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6040 ; 2.053 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000095859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KIRKPATRICK-BAEZ MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3W45 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 1000, 0.1M TRIS-HCL, 5MM REMARK 280 MGCL2, 3MM MNCL2, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 164 O HOH B 586 1.67 REMARK 500 OG SER A 28 O HOH A 577 1.77 REMARK 500 OG SER B 28 O HOH B 592 1.94 REMARK 500 NE2 GLN B 171 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 37 CD GLU A 37 OE1 -0.076 REMARK 500 ASP A 70 CB ASP A 70 CG -0.132 REMARK 500 GLU A 72 CB GLU A 72 CG -0.114 REMARK 500 GLU A 72 CD GLU A 72 OE1 0.078 REMARK 500 GLU A 76 CD GLU A 76 OE1 0.082 REMARK 500 TYR B 15 CE2 TYR B 15 CD2 0.094 REMARK 500 SER B 116 CB SER B 116 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 22 CD - CE - NZ ANGL. DEV. = 21.1 DEGREES REMARK 500 MET A 31 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 LYS A 32 CD - CE - NZ ANGL. DEV. = 16.1 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLU A 37 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 CYS A 40 CB - CA - C ANGL. DEV. = 7.5 DEGREES REMARK 500 CYS A 40 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 123 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 123 CB - CG - CD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 34 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 CYS B 40 CB - CA - C ANGL. DEV. = 8.7 DEGREES REMARK 500 CYS B 40 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 CYS B 40 CA - CB - SG ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP B 61 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP B 61 CB - CG - OD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR B 123 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR B 123 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 MET B 182 CG - SD - CE ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -169.51 -125.53 REMARK 500 TYR A 123 72.12 -151.11 REMARK 500 ASP B 34 -165.15 -126.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 156 OD1 90.3 REMARK 620 3 ASP A 189 OD2 174.0 85.8 REMARK 620 4 HOH A 354 O 97.2 169.2 87.3 REMARK 620 5 HOH A 355 O 92.8 88.4 91.6 83.5 REMARK 620 6 HOH A 356 O 86.7 94.4 89.0 93.8 177.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 ASP B 156 OD1 90.5 REMARK 620 3 ASP B 189 OD2 174.3 85.8 REMARK 620 4 HOH B 349 O 96.5 169.2 87.7 REMARK 620 5 HOH B 350 O 92.6 88.2 91.8 83.3 REMARK 620 6 HOH B 351 O 87.4 94.3 88.4 94.2 177.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W40 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A MAGNESIUM ION IN SPACE GROUP P1 REMARK 900 RELATED ID: 3W41 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MAGNESIUM IONS IN SPACE GROUP P21 REMARK 900 RELATED ID: 3W43 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MANGANESE IONS IN SPACE GROUP P21 REMARK 900 RELATED ID: 3W44 RELATED DB: PDB REMARK 900 THE SAME PROTEIN SE-MET DERIVATIVE REMARK 900 RELATED ID: 3W45 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH COBALT IN SPACE GROUP P1 DBREF 3W42 A 1 199 UNP P17906 RSBX_BACSU 1 199 DBREF 3W42 B 1 199 UNP P17906 RSBX_BACSU 1 199 SEQRES 1 A 199 MET ILE GLN VAL GLU GLU ASN GLU HIS ILE GLN THR LEU SEQRES 2 A 199 VAL TYR GLN LEU ASN LYS GLU GLY LYS SER ILE CYS GLY SEQRES 3 A 199 ASP SER PHE PHE MET LYS ALA ASP ASP LYS GLU LEU ILE SEQRES 4 A 199 CYS ALA VAL ALA ASP GLY LEU GLY SER GLY SER LEU ALA SEQRES 5 A 199 ASN GLU SER SER ALA ALA ILE LYS ASP LEU VAL GLU ASN SEQRES 6 A 199 TYR ALA SER GLU ASP VAL GLU SER ILE ILE GLU ARG CYS SEQRES 7 A 199 ASN GLN ALA MET LYS ASN LYS ARG GLY ALA THR ALA SER SEQRES 8 A 199 ILE LEU LYS ILE ASN PHE GLU GLN ARG GLN PHE THR TYR SEQRES 9 A 199 CYS SER VAL GLY ASN VAL ARG PHE ILE LEU HIS SER PRO SEQRES 10 A 199 SER GLY GLU SER PHE TYR PRO LEU PRO ILE SER GLY TYR SEQRES 11 A 199 LEU SER GLY LYS PRO GLN LYS TYR LYS THR HIS THR ALA SEQRES 12 A 199 THR TYR GLU LYS GLY SER LYS PHE ILE ILE HIS THR ASP SEQRES 13 A 199 GLY LEU ASN VAL PRO ASP ILE ARG SER HIS LEU LYS LYS SEQRES 14 A 199 GLY GLN SER VAL GLU GLU ILE SER ASN SER LEU LYS MET SEQRES 15 A 199 TYR THR THR SER ARG LYS ASP ASP LEU THR TYR ILE LEU SEQRES 16 A 199 GLY GLN LEU SER SEQRES 1 B 199 MET ILE GLN VAL GLU GLU ASN GLU HIS ILE GLN THR LEU SEQRES 2 B 199 VAL TYR GLN LEU ASN LYS GLU GLY LYS SER ILE CYS GLY SEQRES 3 B 199 ASP SER PHE PHE MET LYS ALA ASP ASP LYS GLU LEU ILE SEQRES 4 B 199 CYS ALA VAL ALA ASP GLY LEU GLY SER GLY SER LEU ALA SEQRES 5 B 199 ASN GLU SER SER ALA ALA ILE LYS ASP LEU VAL GLU ASN SEQRES 6 B 199 TYR ALA SER GLU ASP VAL GLU SER ILE ILE GLU ARG CYS SEQRES 7 B 199 ASN GLN ALA MET LYS ASN LYS ARG GLY ALA THR ALA SER SEQRES 8 B 199 ILE LEU LYS ILE ASN PHE GLU GLN ARG GLN PHE THR TYR SEQRES 9 B 199 CYS SER VAL GLY ASN VAL ARG PHE ILE LEU HIS SER PRO SEQRES 10 B 199 SER GLY GLU SER PHE TYR PRO LEU PRO ILE SER GLY TYR SEQRES 11 B 199 LEU SER GLY LYS PRO GLN LYS TYR LYS THR HIS THR ALA SEQRES 12 B 199 THR TYR GLU LYS GLY SER LYS PHE ILE ILE HIS THR ASP SEQRES 13 B 199 GLY LEU ASN VAL PRO ASP ILE ARG SER HIS LEU LYS LYS SEQRES 14 B 199 GLY GLN SER VAL GLU GLU ILE SER ASN SER LEU LYS MET SEQRES 15 B 199 TYR THR THR SER ARG LYS ASP ASP LEU THR TYR ILE LEU SEQRES 16 B 199 GLY GLN LEU SER HET MN A 201 1 HET MN B 201 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *609(H2 O) HELIX 1 1 SER A 48 TYR A 66 1 19 HELIX 2 2 ASP A 70 MET A 82 1 13 HELIX 3 3 ASP A 162 GLY A 170 1 9 HELIX 4 4 SER A 172 LEU A 180 1 9 HELIX 5 5 LYS A 181 THR A 184 5 4 HELIX 6 6 SER B 48 TYR B 66 1 19 HELIX 7 7 ASP B 70 MET B 82 1 13 HELIX 8 8 ASP B 162 GLY B 170 1 9 HELIX 9 9 SER B 172 LYS B 181 1 10 HELIX 10 10 MET B 182 THR B 184 5 3 SHEET 1 A 6 ILE A 2 GLU A 6 0 SHEET 2 A 6 ILE A 10 LEU A 17 -1 O VAL A 14 N GLN A 3 SHEET 3 A 6 LEU A 191 LEU A 198 -1 O LEU A 195 N LEU A 13 SHEET 4 A 6 LYS A 150 HIS A 154 -1 N ILE A 153 O ILE A 194 SHEET 5 A 6 ARG A 111 HIS A 115 -1 N HIS A 115 O LYS A 150 SHEET 6 A 6 SER A 121 PHE A 122 -1 O PHE A 122 N LEU A 114 SHEET 1 B 5 ASP A 27 ALA A 33 0 SHEET 2 B 5 GLU A 37 GLY A 45 -1 O ALA A 43 N SER A 28 SHEET 3 B 5 ALA A 88 ASN A 96 -1 O LEU A 93 N CYS A 40 SHEET 4 B 5 GLN A 101 VAL A 107 -1 O GLN A 101 N ASN A 96 SHEET 5 B 5 THR A 140 THR A 144 -1 O ALA A 143 N PHE A 102 SHEET 1 C 6 ILE B 2 GLU B 6 0 SHEET 2 C 6 ILE B 10 LEU B 17 -1 O VAL B 14 N GLN B 3 SHEET 3 C 6 LEU B 191 LEU B 198 -1 O LEU B 195 N LEU B 13 SHEET 4 C 6 LYS B 150 HIS B 154 -1 N PHE B 151 O GLY B 196 SHEET 5 C 6 ARG B 111 HIS B 115 -1 N HIS B 115 O LYS B 150 SHEET 6 C 6 SER B 121 PHE B 122 -1 O PHE B 122 N LEU B 114 SHEET 1 D 5 ASP B 27 ALA B 33 0 SHEET 2 D 5 GLU B 37 GLY B 45 -1 O ALA B 43 N SER B 28 SHEET 3 D 5 ALA B 88 ASN B 96 -1 O LEU B 93 N CYS B 40 SHEET 4 D 5 GLN B 101 VAL B 107 -1 O GLN B 101 N ASN B 96 SHEET 5 D 5 THR B 140 THR B 144 -1 O ALA B 143 N PHE B 102 LINK OD2 ASP A 44 MN MN A 201 1555 1555 2.09 LINK OD1 ASP A 156 MN MN A 201 1555 1555 2.03 LINK OD2 ASP A 189 MN MN A 201 1555 1555 2.11 LINK MN MN A 201 O HOH A 354 1555 1555 2.07 LINK MN MN A 201 O HOH A 355 1555 1555 2.13 LINK MN MN A 201 O HOH A 356 1555 1555 2.06 LINK OD2 ASP B 44 MN MN B 201 1555 1555 2.08 LINK OD1 ASP B 156 MN MN B 201 1555 1555 2.03 LINK OD2 ASP B 189 MN MN B 201 1555 1555 2.12 LINK MN MN B 201 O HOH B 349 1555 1555 2.08 LINK MN MN B 201 O HOH B 350 1555 1555 2.12 LINK MN MN B 201 O HOH B 351 1555 1555 2.06 SITE 1 AC1 6 ASP A 44 ASP A 156 ASP A 189 HOH A 354 SITE 2 AC1 6 HOH A 355 HOH A 356 SITE 1 AC2 6 ASP B 44 ASP B 156 ASP B 189 HOH B 349 SITE 2 AC2 6 HOH B 350 HOH B 351 CRYST1 33.198 41.649 68.755 81.17 89.96 71.46 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030122 -0.010102 0.001634 0.00000 SCALE2 0.000000 0.025324 -0.004149 0.00000 SCALE3 0.000000 0.000000 0.014738 0.00000