HEADER HYDROLASE 10-JAN-13 3W4Q TITLE CRYSTAL STRUCTURE OF PENA BETA-LACTAMASE FROM BURKHOLDERIA MULTIVORANS TITLE 2 AT PH4.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 45-302; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS; SOURCE 3 ORGANISM_TAXID: 395019; SOURCE 4 STRAIN: ATCC 17616 / 249; SOURCE 5 GENE: AMPC, BMULJ_04828, BMUL_3689, PENA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NUKAGA,N.OHUCHI,K.M.PAPP-WALLACE,M.A.TARACILA,R.A.BONOMO REVDAT 4 03-APR-24 3W4Q 1 REMARK REVDAT 3 20-MAR-24 3W4Q 1 REMARK REVDAT 2 04-SEP-13 3W4Q 1 JRNL REVDAT 1 15-MAY-13 3W4Q 0 JRNL AUTH K.M.PAPP-WALLACE,M.A.TARACILA,J.A.GATTA,N.OHUCHI,R.A.BONOMO, JRNL AUTH 2 M.NUKAGA JRNL TITL INSIGHTS INTO BETA-LACTAMASES FROM BURKHOLDERIA SPECIES, TWO JRNL TITL 2 PHYLOGENETICALLY RELATED YET DISTINCT RESISTANCE JRNL TITL 3 DETERMINANTS JRNL REF J.BIOL.CHEM. V. 288 19090 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23658015 JRNL DOI 10.1074/JBC.M113.458315 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.132 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.132 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6408 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 202528 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.121 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 175109 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 929 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 6651.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 5558.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 52 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 62746 REMARK 3 NUMBER OF RESTRAINTS : 79470 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.074 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.080 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.035 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.023 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.106 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN THE C2 SPACE GROUP, ALPHA=90, REMARK 3 BETA=89.996, GAMMA=90. REMARK 4 REMARK 4 3W4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000095883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.040 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: THE STRUCTURE OF PENI AT PH9.5(NOW DIPOSITED REMARK 200 TOGETHER WITH THIS) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1M PHOSPHATE/CITRATE, REMARK 280 0.2M SODIUM CHLORIDE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.50850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.50850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 382 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 474 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 535 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CD CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 256 CZ NH1 NH2 REMARK 470 ARG A 269 CD NE CZ NH1 NH2 REMARK 470 LYS A 273 CD CE NZ REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 114 CG OD1 OD2 REMARK 470 LYS B 219 CE NZ REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 470 ARG C 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 99 CZ NH1 NH2 REMARK 470 LYS C 219 CD CE NZ REMARK 470 ARG C 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 256 CD NE CZ NH1 NH2 REMARK 470 LYS C 273 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 57 CD - NE - CZ ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 111 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 114 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 161 NH1 - CZ - NH2 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 GLU A 168 OE1 - CD - OE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 204 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 204 NH1 - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 VAL A 225 CA - CB - CG1 ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 277 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 99 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 111 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE B 160 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 161 NH1 - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 161 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG B 164 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLU B 168 OE1 - CD - OE2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 178 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 191 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 256 CD - NE - CZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 256 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 277 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 277 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG C 57 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP C 63 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -138.40 46.33 REMARK 500 TYR A 105 80.28 60.55 REMARK 500 ARG A 220 -120.78 -107.44 REMARK 500 CYS B 69 -139.44 49.20 REMARK 500 TYR B 105 78.91 61.41 REMARK 500 ARG B 220 -120.72 -106.44 REMARK 500 CYS C 69 -138.55 48.58 REMARK 500 TYR C 105 79.47 59.39 REMARK 500 ARG C 220 -119.76 -107.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OV5 RELATED DB: PDB REMARK 900 BETA-LACTAMASE WITH SIMILAR SUBSTRATE SPECIFICITY REMARK 900 RELATED ID: 3W4O RELATED DB: PDB REMARK 900 RELATED ID: 3W4P RELATED DB: PDB DBREF 3W4Q A 32 291 UNP A9ANW2 A9ANW2_BURM1 45 302 DBREF 3W4Q B 32 291 UNP A9ANW2 A9ANW2_BURM1 45 302 DBREF 3W4Q C 32 291 UNP A9ANW2 A9ANW2_BURM1 45 302 SEQRES 1 A 258 ALA SER PHE ALA ALA LEU GLU ARG ALA ALA GLY GLY ARG SEQRES 2 A 258 LEU GLY VAL CYS ALA ILE ASP THR ALA THR GLY ARG ARG SEQRES 3 A 258 ALA LEU HIS ARG ALA ASP GLU ARG PHE PRO PHE CYS SER SEQRES 4 A 258 THR PHE LYS ALA MET LEU GLY ALA ALA VAL LEU ALA GLN SEQRES 5 A 258 SER VAL ALA HIS PRO GLY LEU LEU GLN GLN ARG VAL THR SEQRES 6 A 258 TYR GLY ARG SER ASP LEU VAL ASN TYR SER PRO VAL THR SEQRES 7 A 258 GLU ARG HIS VAL ASP THR GLY MET THR VAL ALA GLU LEU SEQRES 8 A 258 CYS ALA ALA THR ILE GLN TYR SER ASP ASN THR ALA ALA SEQRES 9 A 258 ASN GLU LEU MET LYS ARG ILE GLY GLY PRO ALA ALA VAL SEQRES 10 A 258 THR ALA TYR ALA ARG SER ILE GLY ASP ASP THR PHE ARG SEQRES 11 A 258 LEU ASP ARG TRP GLU THR GLU LEU ASN THR ALA LEU PRO SEQRES 12 A 258 GLY ASP LEU ARG ASP THR THR THR PRO ALA ALA MET ALA SEQRES 13 A 258 ALA ASN LEU ARG VAL LEU VAL LEU GLY ASP ALA LEU PRO SEQRES 14 A 258 PRO ALA GLN ARG ALA GLN LEU ILE GLU TRP LEU ARG GLY SEQRES 15 A 258 ASN LYS VAL GLY ASP LYS ARG ILE ARG ALA GLY VAL PRO SEQRES 16 A 258 THR GLY TRP ARG VAL GLY ASP LYS THR GLY THR GLY ASP SEQRES 17 A 258 TYR GLY THR THR ASN ASP VAL GLY VAL LEU TRP PRO PRO SEQRES 18 A 258 SER ARG ALA PRO ILE VAL LEU ALA VAL TYR TYR THR GLN SEQRES 19 A 258 THR ARG ALA ASP ALA LYS ALA LYS ASP ASP VAL ILE ALA SEQRES 20 A 258 ALA ALA THR ARG ILE ALA SER ALA THR LEU ALA SEQRES 1 B 258 ALA SER PHE ALA ALA LEU GLU ARG ALA ALA GLY GLY ARG SEQRES 2 B 258 LEU GLY VAL CYS ALA ILE ASP THR ALA THR GLY ARG ARG SEQRES 3 B 258 ALA LEU HIS ARG ALA ASP GLU ARG PHE PRO PHE CYS SER SEQRES 4 B 258 THR PHE LYS ALA MET LEU GLY ALA ALA VAL LEU ALA GLN SEQRES 5 B 258 SER VAL ALA HIS PRO GLY LEU LEU GLN GLN ARG VAL THR SEQRES 6 B 258 TYR GLY ARG SER ASP LEU VAL ASN TYR SER PRO VAL THR SEQRES 7 B 258 GLU ARG HIS VAL ASP THR GLY MET THR VAL ALA GLU LEU SEQRES 8 B 258 CYS ALA ALA THR ILE GLN TYR SER ASP ASN THR ALA ALA SEQRES 9 B 258 ASN GLU LEU MET LYS ARG ILE GLY GLY PRO ALA ALA VAL SEQRES 10 B 258 THR ALA TYR ALA ARG SER ILE GLY ASP ASP THR PHE ARG SEQRES 11 B 258 LEU ASP ARG TRP GLU THR GLU LEU ASN THR ALA LEU PRO SEQRES 12 B 258 GLY ASP LEU ARG ASP THR THR THR PRO ALA ALA MET ALA SEQRES 13 B 258 ALA ASN LEU ARG VAL LEU VAL LEU GLY ASP ALA LEU PRO SEQRES 14 B 258 PRO ALA GLN ARG ALA GLN LEU ILE GLU TRP LEU ARG GLY SEQRES 15 B 258 ASN LYS VAL GLY ASP LYS ARG ILE ARG ALA GLY VAL PRO SEQRES 16 B 258 THR GLY TRP ARG VAL GLY ASP LYS THR GLY THR GLY ASP SEQRES 17 B 258 TYR GLY THR THR ASN ASP VAL GLY VAL LEU TRP PRO PRO SEQRES 18 B 258 SER ARG ALA PRO ILE VAL LEU ALA VAL TYR TYR THR GLN SEQRES 19 B 258 THR ARG ALA ASP ALA LYS ALA LYS ASP ASP VAL ILE ALA SEQRES 20 B 258 ALA ALA THR ARG ILE ALA SER ALA THR LEU ALA SEQRES 1 C 258 ALA SER PHE ALA ALA LEU GLU ARG ALA ALA GLY GLY ARG SEQRES 2 C 258 LEU GLY VAL CYS ALA ILE ASP THR ALA THR GLY ARG ARG SEQRES 3 C 258 ALA LEU HIS ARG ALA ASP GLU ARG PHE PRO PHE CYS SER SEQRES 4 C 258 THR PHE LYS ALA MET LEU GLY ALA ALA VAL LEU ALA GLN SEQRES 5 C 258 SER VAL ALA HIS PRO GLY LEU LEU GLN GLN ARG VAL THR SEQRES 6 C 258 TYR GLY ARG SER ASP LEU VAL ASN TYR SER PRO VAL THR SEQRES 7 C 258 GLU ARG HIS VAL ASP THR GLY MET THR VAL ALA GLU LEU SEQRES 8 C 258 CYS ALA ALA THR ILE GLN TYR SER ASP ASN THR ALA ALA SEQRES 9 C 258 ASN GLU LEU MET LYS ARG ILE GLY GLY PRO ALA ALA VAL SEQRES 10 C 258 THR ALA TYR ALA ARG SER ILE GLY ASP ASP THR PHE ARG SEQRES 11 C 258 LEU ASP ARG TRP GLU THR GLU LEU ASN THR ALA LEU PRO SEQRES 12 C 258 GLY ASP LEU ARG ASP THR THR THR PRO ALA ALA MET ALA SEQRES 13 C 258 ALA ASN LEU ARG VAL LEU VAL LEU GLY ASP ALA LEU PRO SEQRES 14 C 258 PRO ALA GLN ARG ALA GLN LEU ILE GLU TRP LEU ARG GLY SEQRES 15 C 258 ASN LYS VAL GLY ASP LYS ARG ILE ARG ALA GLY VAL PRO SEQRES 16 C 258 THR GLY TRP ARG VAL GLY ASP LYS THR GLY THR GLY ASP SEQRES 17 C 258 TYR GLY THR THR ASN ASP VAL GLY VAL LEU TRP PRO PRO SEQRES 18 C 258 SER ARG ALA PRO ILE VAL LEU ALA VAL TYR TYR THR GLN SEQRES 19 C 258 THR ARG ALA ASP ALA LYS ALA LYS ASP ASP VAL ILE ALA SEQRES 20 C 258 ALA ALA THR ARG ILE ALA SER ALA THR LEU ALA FORMUL 4 HOH *929(H2 O) HELIX 1 1 SER A 33 GLY A 42 1 10 HELIX 2 2 THR A 71 HIS A 87 1 17 HELIX 3 3 GLY A 89 GLN A 92 5 4 HELIX 4 4 GLY A 98 LEU A 102 5 5 HELIX 5 5 VAL A 108 HIS A 112 5 5 HELIX 6 6 VAL A 119 TYR A 129 1 11 HELIX 7 7 ASP A 131 GLY A 143 1 13 HELIX 8 8 GLY A 143 ILE A 155 1 13 HELIX 9 9 THR A 167 THR A 171 5 5 HELIX 10 10 THR A 182 GLY A 196 1 15 HELIX 11 11 PRO A 200 GLY A 213 1 14 HELIX 12 12 ARG A 220 GLY A 224 5 5 HELIX 13 13 LYS A 275 LEU A 290 1 16 HELIX 14 14 SER B 33 GLY B 42 1 10 HELIX 15 15 THR B 71 HIS B 87 1 17 HELIX 16 16 GLY B 89 GLN B 92 5 4 HELIX 17 17 GLY B 98 LEU B 102 5 5 HELIX 18 18 VAL B 108 HIS B 112 5 5 HELIX 19 19 VAL B 119 TYR B 129 1 11 HELIX 20 20 ASP B 131 GLY B 143 1 13 HELIX 21 21 GLY B 143 ILE B 155 1 13 HELIX 22 22 THR B 167 THR B 171 5 5 HELIX 23 23 THR B 182 LEU B 195 1 14 HELIX 24 24 PRO B 200 GLY B 213 1 14 HELIX 25 25 ARG B 220 VAL B 225 5 6 HELIX 26 26 LYS B 275 LEU B 290 1 16 HELIX 27 27 SER C 33 GLY C 42 1 10 HELIX 28 28 THR C 71 HIS C 87 1 17 HELIX 29 29 GLY C 89 GLN C 92 5 4 HELIX 30 30 GLY C 98 LEU C 102 5 5 HELIX 31 31 VAL C 108 HIS C 112 5 5 HELIX 32 32 VAL C 119 TYR C 129 1 11 HELIX 33 33 ASP C 131 GLY C 143 1 13 HELIX 34 34 GLY C 143 ILE C 155 1 13 HELIX 35 35 THR C 167 THR C 171 5 5 HELIX 36 36 THR C 182 LEU C 195 1 14 HELIX 37 37 PRO C 200 GLY C 213 1 14 HELIX 38 38 ARG C 220 GLY C 224 5 5 HELIX 39 39 LYS C 275 LEU C 290 1 16 SHEET 1 A 5 ARG A 57 HIS A 60 0 SHEET 2 A 5 ARG A 44 ASP A 51 -1 N VAL A 47 O HIS A 60 SHEET 3 A 5 ILE A 259 THR A 266 -1 O TYR A 264 N GLY A 46 SHEET 4 A 5 THR A 243 TRP A 251 -1 N LEU A 250 O ILE A 259 SHEET 5 A 5 ARG A 230 GLY A 238 -1 N ARG A 230 O TRP A 251 SHEET 1 B 2 PHE A 66 PRO A 67 0 SHEET 2 B 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 C 2 ARG A 94 VAL A 95 0 SHEET 2 C 2 MET A 117 THR A 118 -1 O MET A 117 N VAL A 95 SHEET 1 D 5 ARG B 57 HIS B 60 0 SHEET 2 D 5 ARG B 44 ASP B 51 -1 N VAL B 47 O HIS B 60 SHEET 3 D 5 ILE B 259 THR B 266 -1 O TYR B 264 N GLY B 46 SHEET 4 D 5 THR B 243 TRP B 251 -1 N LEU B 250 O ILE B 259 SHEET 5 D 5 ARG B 230 GLY B 238 -1 N ARG B 230 O TRP B 251 SHEET 1 E 2 PHE B 66 PRO B 67 0 SHEET 2 E 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 F 2 ARG B 94 VAL B 95 0 SHEET 2 F 2 MET B 117 THR B 118 -1 O MET B 117 N VAL B 95 SHEET 1 G 5 ARG C 57 HIS C 60 0 SHEET 2 G 5 ARG C 44 ASP C 51 -1 N VAL C 47 O HIS C 60 SHEET 3 G 5 ILE C 259 THR C 266 -1 O TYR C 264 N GLY C 46 SHEET 4 G 5 THR C 243 TRP C 251 -1 N LEU C 250 O ILE C 259 SHEET 5 G 5 ARG C 230 GLY C 238 -1 N ARG C 230 O TRP C 251 SHEET 1 H 2 PHE C 66 PRO C 67 0 SHEET 2 H 2 THR C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 I 2 ARG C 94 VAL C 95 0 SHEET 2 I 2 MET C 117 THR C 118 -1 O MET C 117 N VAL C 95 CISPEP 1 GLU A 166 THR A 167 0 -2.28 CISPEP 2 GLU B 166 THR B 167 0 -2.05 CISPEP 3 GLU C 166 THR C 167 0 -2.22 CRYST1 121.017 69.910 84.350 90.00 90.00 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011855 0.00000