HEADER TRANSFERASE 10-JAN-13 3W4S TITLE MYO-INOSITOL KINASE FROM THERMOCOCCUS KODAKARENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE/PYRIMIDINE KINASE, PFKB FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 5 GENE: TK2285; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FUJIHASHI,Y.MIYAMOTO,K.MIKI REVDAT 3 30-OCT-24 3W4S 1 REMARK REVDAT 2 22-FEB-17 3W4S 1 JRNL REVDAT 1 12-JUN-13 3W4S 0 JRNL AUTH T.SATO,M.FUJIHASHI,Y.MIYAMOTO,K.KUWATA,E.KUSAKA,H.FUJITA, JRNL AUTH 2 K.MIKI,H.ATOMI JRNL TITL AN UNCHARACTERIZED MEMBER OF THE RIBOKINASE FAMILY IN JRNL TITL 2 THERMOCOCCUS KODAKARENSIS EXHIBITS MYO-INOSITOL KINASE JRNL TITL 3 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 288 20856 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23737529 JRNL DOI 10.1074/JBC.M113.457259 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3380 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4561 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6214 ; 1.297 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 5.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;36.626 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;14.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.259 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3520 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8471 76.4530 6.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0593 REMARK 3 T33: 0.0293 T12: -0.0172 REMARK 3 T13: -0.0132 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.6843 REMARK 3 L33: 0.4348 L12: -0.0679 REMARK 3 L13: 0.0564 L23: -0.1213 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0141 S13: -0.0080 REMARK 3 S21: 0.0462 S22: -0.0337 S23: 0.0038 REMARK 3 S31: -0.0718 S32: 0.0588 S33: 0.0418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8956 39.1933 -18.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.0638 REMARK 3 T33: 0.0499 T12: 0.0068 REMARK 3 T13: -0.0016 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.0712 L22: 0.6135 REMARK 3 L33: 0.3527 L12: 0.1118 REMARK 3 L13: 0.0233 L23: 0.3536 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0235 S13: 0.0234 REMARK 3 S21: 0.0179 S22: 0.0026 S23: 0.0275 REMARK 3 S31: 0.0298 S32: 0.0286 S33: 0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000095885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.6 REMARK 200 MONOCHROMATOR : DEFAULT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-23%(W/V) PEG3350, 0.2M NH4I, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.15300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.93750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.16900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.93750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.15300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.16900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 209 REMARK 465 GLY B 210 REMARK 465 VAL B 211 REMARK 465 ASP B 212 REMARK 465 GLU B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 -152.90 -152.88 REMARK 500 ASN A 83 -31.30 -145.93 REMARK 500 ALA A 113 78.57 -163.76 REMARK 500 ALA A 113 78.57 -162.66 REMARK 500 ASN A 188 56.35 -140.70 REMARK 500 LEU B 80 -154.79 -105.00 REMARK 500 GLU B 91 148.97 -170.01 REMARK 500 ALA B 93 -178.95 -69.68 REMARK 500 ALA B 113 61.21 -156.23 REMARK 500 ASN B 188 50.52 -145.21 REMARK 500 ASP B 255 76.87 -111.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 307 DBREF 3W4S A 1 273 UNP Q5JDA3 Q5JDA3_PYRKO 1 273 DBREF 3W4S B 1 273 UNP Q5JDA3 Q5JDA3_PYRKO 1 273 SEQRES 1 A 273 MET LYS CYS LEU VAL VAL GLY HIS VAL VAL ARG ASP ILE SEQRES 2 A 273 VAL LYS LYS GLY ASN LYS VAL LEU GLU ARG LEU GLY GLY SEQRES 3 A 273 GLY ALA TYR TYR SER ALA LEU ALA LEU SER ARG PHE CYS SEQRES 4 A 273 ASP VAL GLU ILE LEU THR SER PHE SER ASN LEU PRO GLU SEQRES 5 A 273 GLU TRP ILE LYS GLU LEU GLU SER MET ALA LYS LEU GLN SEQRES 6 A 273 VAL VAL PRO SER GLU THR THR THR THR TYR GLU LEU THR SEQRES 7 A 273 TYR LEU ASP GLY ASN ARG ARG ARG LEU LYS LEU LEU GLU SEQRES 8 A 273 ARG ALA SER PRO ILE GLU GLU LEU PRO ASP GLY GLU TYR SEQRES 9 A 273 ASP VAL LEU LEU MET ASN PRO VAL ALA ARG GLU VAL PRO SEQRES 10 A 273 PRO ALA LEU VAL THR SER ALA LEU LYS LYS PHE PRO PHE SEQRES 11 A 273 VAL ALA VAL ASP ILE GLN GLY PHE ILE ARG SER SER SER SEQRES 12 A 273 PRO GLY GLU ILE GLN TYR GLN PRO ILE ASP GLY SER PHE SEQRES 13 A 273 LEU LYS GLY VAL LYS ILE LEU HIS ALA ASP LEU GLY GLU SEQRES 14 A 273 TYR GLN TYR LEU GLN GLY PHE SER PRO GLU PHE VAL ASP SEQRES 15 A 273 VAL LEU LEU LEU SER ASN GLY PRO GLU PRO GLY LYS ALA SEQRES 16 A 273 PHE LEU HIS GLY ARG GLU TYR THR PHE GLU PRO VAL HIS SEQRES 17 A 273 VAL GLY VAL ASP GLU SER THR GLY ALA GLY ASP VAL PHE SEQRES 18 A 273 LEU GLY ALA PHE THR GLY PHE TYR SER GLN CYS PRO PHE SEQRES 19 A 273 VAL GLN ALA LEU LYS ARG ALA ALA ALA PHE THR ALA LEU SEQRES 20 A 273 PHE LEU LYS ASN ARG SER VAL ASP PHE SER MET ASP ASP SEQRES 21 A 273 VAL ASN GLU LEU ALA MET LYS VAL GLU VAL LYS ARG VAL SEQRES 1 B 273 MET LYS CYS LEU VAL VAL GLY HIS VAL VAL ARG ASP ILE SEQRES 2 B 273 VAL LYS LYS GLY ASN LYS VAL LEU GLU ARG LEU GLY GLY SEQRES 3 B 273 GLY ALA TYR TYR SER ALA LEU ALA LEU SER ARG PHE CYS SEQRES 4 B 273 ASP VAL GLU ILE LEU THR SER PHE SER ASN LEU PRO GLU SEQRES 5 B 273 GLU TRP ILE LYS GLU LEU GLU SER MET ALA LYS LEU GLN SEQRES 6 B 273 VAL VAL PRO SER GLU THR THR THR THR TYR GLU LEU THR SEQRES 7 B 273 TYR LEU ASP GLY ASN ARG ARG ARG LEU LYS LEU LEU GLU SEQRES 8 B 273 ARG ALA SER PRO ILE GLU GLU LEU PRO ASP GLY GLU TYR SEQRES 9 B 273 ASP VAL LEU LEU MET ASN PRO VAL ALA ARG GLU VAL PRO SEQRES 10 B 273 PRO ALA LEU VAL THR SER ALA LEU LYS LYS PHE PRO PHE SEQRES 11 B 273 VAL ALA VAL ASP ILE GLN GLY PHE ILE ARG SER SER SER SEQRES 12 B 273 PRO GLY GLU ILE GLN TYR GLN PRO ILE ASP GLY SER PHE SEQRES 13 B 273 LEU LYS GLY VAL LYS ILE LEU HIS ALA ASP LEU GLY GLU SEQRES 14 B 273 TYR GLN TYR LEU GLN GLY PHE SER PRO GLU PHE VAL ASP SEQRES 15 B 273 VAL LEU LEU LEU SER ASN GLY PRO GLU PRO GLY LYS ALA SEQRES 16 B 273 PHE LEU HIS GLY ARG GLU TYR THR PHE GLU PRO VAL HIS SEQRES 17 B 273 VAL GLY VAL ASP GLU SER THR GLY ALA GLY ASP VAL PHE SEQRES 18 B 273 LEU GLY ALA PHE THR GLY PHE TYR SER GLN CYS PRO PHE SEQRES 19 B 273 VAL GLN ALA LEU LYS ARG ALA ALA ALA PHE THR ALA LEU SEQRES 20 B 273 PHE LEU LYS ASN ARG SER VAL ASP PHE SER MET ASP ASP SEQRES 21 B 273 VAL ASN GLU LEU ALA MET LYS VAL GLU VAL LYS ARG VAL HET IOD A 401 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 404 1 HET IOD A 405 1 HET IOD A 406 1 HET IOD A 407 1 HET IOD A 408 1 HET IOD A 409 1 HET IOD A 410 1 HET IOD A 411 1 HET IOD A 412 1 HET IOD A 413 1 HET IOD A 414 1 HET IOD A 415 1 HET IOD A 416 1 HET IOD A 417 1 HET IOD A 418 1 HET IOD A 419 1 HET IOD A 420 1 HET IOD A 421 1 HET IOD A 422 1 HET IOD A 423 1 HET IOD B 301 1 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HET IOD B 306 1 HET IOD B 307 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 30(I 1-) FORMUL 33 HOH *364(H2 O) HELIX 1 1 GLY A 26 SER A 36 1 11 HELIX 2 2 PRO A 51 ALA A 62 1 12 HELIX 3 3 PRO A 117 PHE A 128 1 12 HELIX 4 4 ILE A 135 ARG A 140 1 6 HELIX 5 5 SER A 155 LYS A 158 5 4 HELIX 6 6 GLY A 168 GLN A 171 5 4 HELIX 7 7 SER A 177 VAL A 181 5 5 HELIX 8 8 GLY A 216 SER A 230 1 15 HELIX 9 9 PRO A 233 ARG A 252 1 20 HELIX 10 10 SER A 257 MET A 266 1 10 HELIX 11 11 GLY B 26 SER B 36 1 11 HELIX 12 12 PRO B 51 ALA B 62 1 12 HELIX 13 13 PRO B 117 PHE B 128 1 12 HELIX 14 14 ILE B 135 ARG B 140 1 6 HELIX 15 15 SER B 155 LYS B 158 5 4 HELIX 16 16 GLY B 168 GLN B 171 5 4 HELIX 17 17 SER B 177 VAL B 181 5 5 HELIX 18 18 GLY B 216 SER B 230 1 15 HELIX 19 19 PRO B 233 ARG B 252 1 20 HELIX 20 20 SER B 257 MET B 266 1 10 SHEET 1 A10 LYS A 63 VAL A 67 0 SHEET 2 A10 ASP A 40 SER A 46 1 N THR A 45 O VAL A 67 SHEET 3 A10 LYS A 2 VAL A 6 1 N VAL A 5 O GLU A 42 SHEET 4 A10 VAL A 106 MET A 109 1 O LEU A 108 N LEU A 4 SHEET 5 A10 VAL A 131 ASP A 134 1 O ALA A 132 N LEU A 107 SHEET 6 A10 ILE A 162 ASP A 166 1 O ILE A 162 N VAL A 133 SHEET 7 A10 VAL A 183 ASN A 188 1 O LEU A 185 N LEU A 163 SHEET 8 A10 GLU A 191 LEU A 197 -1 O LYS A 194 N LEU A 186 SHEET 9 A10 ARG A 200 PHE A 204 -1 O PHE A 204 N GLY A 193 SHEET 10 A10 VAL A 270 ARG A 272 -1 O LYS A 271 N THR A 203 SHEET 1 B 5 LYS A 19 GLY A 25 0 SHEET 2 B 5 VAL A 10 LYS A 16 -1 N VAL A 14 O LEU A 21 SHEET 3 B 5 THR A 74 TYR A 79 1 O LEU A 77 N LYS A 15 SHEET 4 B 5 ARG A 85 GLU A 91 -1 O LEU A 90 N THR A 74 SHEET 5 B 5 GLY A 145 GLU A 146 -1 O GLY A 145 N LEU A 89 SHEET 1 C 2 ILE A 152 ASP A 153 0 SHEET 2 C 2 LEU A 173 GLN A 174 1 O GLN A 174 N ILE A 152 SHEET 1 D10 LYS B 63 VAL B 67 0 SHEET 2 D10 ASP B 40 SER B 46 1 N THR B 45 O VAL B 67 SHEET 3 D10 LYS B 2 VAL B 6 1 N VAL B 5 O LEU B 44 SHEET 4 D10 VAL B 106 MET B 109 1 O LEU B 108 N LEU B 4 SHEET 5 D10 VAL B 131 ASP B 134 1 O ALA B 132 N LEU B 107 SHEET 6 D10 ILE B 162 ASP B 166 1 O ILE B 162 N VAL B 133 SHEET 7 D10 VAL B 183 ASN B 188 1 O LEU B 185 N LEU B 163 SHEET 8 D10 GLU B 191 LEU B 197 -1 O LYS B 194 N LEU B 186 SHEET 9 D10 ARG B 200 GLU B 205 -1 O PHE B 204 N GLY B 193 SHEET 10 D10 GLU B 269 ARG B 272 -1 O LYS B 271 N THR B 203 SHEET 1 E 5 LYS B 19 GLY B 25 0 SHEET 2 E 5 VAL B 10 LYS B 16 -1 N ASP B 12 O ARG B 23 SHEET 3 E 5 THR B 74 TYR B 79 1 O LEU B 77 N ILE B 13 SHEET 4 E 5 ARG B 85 GLU B 91 -1 O LEU B 90 N THR B 74 SHEET 5 E 5 GLY B 145 GLU B 146 -1 O GLY B 145 N LEU B 89 SHEET 1 F 2 ILE B 152 ASP B 153 0 SHEET 2 F 2 LEU B 173 GLN B 174 1 O GLN B 174 N ILE B 152 SSBOND 1 CYS A 3 CYS A 39 1555 1555 2.03 SSBOND 2 CYS B 3 CYS B 39 1555 1555 2.09 SITE 1 AC1 2 ARG A 11 ARG B 11 SITE 1 AC2 1 SER A 123 SITE 1 AC3 1 IOD A 423 SITE 1 AC4 1 GLN A 174 SITE 1 AC5 4 GLY A 26 IOD A 416 IOD A 420 HOH A 557 SITE 1 AC6 2 THR A 203 GLU A 269 SITE 1 AC7 2 ARG A 23 ARG A 252 SITE 1 AC8 1 ARG A 272 SITE 1 AC9 2 ASP A 101 GLN B 236 SITE 1 BC1 3 GLN A 65 PRO A 100 IOD A 421 SITE 1 BC2 2 ARG A 85 IOD A 409 SITE 1 BC3 1 ARG A 23 SITE 1 BC4 3 VAL A 112 ARG A 140 IOD A 420 SITE 1 BC5 1 GLU A 59 SITE 1 BC6 3 ASP A 12 IOD A 409 IOD A 418 SITE 1 BC7 7 GLU A 98 LEU A 99 PRO A 100 IOD A 415 SITE 2 BC7 7 CYS B 232 GLN B 236 ARG B 240 SITE 1 BC8 1 SER A 141 SITE 1 BC9 2 ALA A 217 IOD A 404 SITE 1 CC1 1 LEU B 99 SITE 1 CC2 1 IOD B 303 SITE 1 CC3 1 IOD B 302 SITE 1 CC4 2 GLY B 26 TYR B 30 SITE 1 CC5 3 VAL A 20 ARG B 92 PRO B 144 SITE 1 CC6 3 THR B 203 GLU B 205 GLU B 269 SITE 1 CC7 2 LEU B 77 ARG B 85 CRYST1 78.306 78.338 83.875 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011923 0.00000