HEADER METAL TRANSPORT 27-JAN-13 3W5C TITLE CRYSTAL STRUCTURE OF THE CALCIUM PUMP IN THE E2 STATE FREE FROM TITLE 2 EXOGENOUS INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERCA1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBITS; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS P-TYPE ATPASE, HYDROLASE, CALCIUM TRANSPORT, CALCIUM BINDING, ATP KEYWDS 2 BINDING, ENDOPLASMIC RETICULUM, SARCOPLASMIC RETICULUM, METAL KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.TOYOSHIMA,S.IWASAWA,H.OGAWA,A.HIRATA,J.TSUEDA,G.INESI REVDAT 3 20-NOV-24 3W5C 1 REMARK SEQADV LINK REVDAT 2 27-MAR-13 3W5C 1 JRNL REVDAT 1 06-MAR-13 3W5C 0 JRNL AUTH C.TOYOSHIMA,S.IWASAWA,H.OGAWA,A.HIRATA,J.TSUEDA,G.INESI JRNL TITL CRYSTAL STRUCTURES OF THE CALCIUM PUMP AND SARCOLIPIN IN THE JRNL TITL 2 MG2+-BOUND E1 STATE. JRNL REF NATURE V. 495 260 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23455422 JRNL DOI 10.1038/NATURE11899 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 51000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000095905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53716 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 146.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 293.11800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.61300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.61300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.55900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.61300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.61300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 439.67700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.61300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.61300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.55900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.61300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.61300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 439.67700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 293.11800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 36 O HOH A 1109 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 994 C GLY A 994 OXT -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 PRO A 518 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 40 145.62 -176.12 REMARK 500 LYS A 47 103.31 -46.96 REMARK 500 GLN A 56 3.98 -69.83 REMARK 500 TRP A 77 -53.54 -124.99 REMARK 500 PHE A 78 32.59 -77.29 REMARK 500 GLU A 83 80.55 -65.27 REMARK 500 THR A 86 23.98 -142.55 REMARK 500 ASP A 133 4.00 -56.97 REMARK 500 LYS A 135 -65.58 -92.91 REMARK 500 VAL A 155 116.92 -29.93 REMARK 500 SER A 184 -5.38 -46.54 REMARK 500 VAL A 185 105.03 -52.78 REMARK 500 ALA A 216 135.31 -173.23 REMARK 500 LEU A 273 -16.64 -48.74 REMARK 500 GLU A 309 -38.48 -26.91 REMARK 500 ASN A 330 -2.27 78.73 REMARK 500 LYS A 352 -76.55 -78.43 REMARK 500 MET A 366 146.36 -170.34 REMARK 500 ASP A 373 94.11 -170.51 REMARK 500 PRO A 391 26.74 -69.84 REMARK 500 ASP A 399 -18.26 68.47 REMARK 500 ASP A 426 135.58 -171.40 REMARK 500 LEU A 462 150.66 -41.42 REMARK 500 SER A 463 -138.13 -60.12 REMARK 500 SER A 504 -70.21 -103.44 REMARK 500 ARG A 505 75.88 -117.89 REMARK 500 PRO A 571 152.97 -46.40 REMARK 500 GLU A 588 53.65 -98.49 REMARK 500 VAL A 594 -66.63 -100.25 REMARK 500 ALA A 649 -34.00 -36.25 REMARK 500 LEU A 663 -59.67 -24.51 REMARK 500 ALA A 780 8.26 -63.82 REMARK 500 VAL A 798 -72.16 -105.08 REMARK 500 SER A 830 143.64 -179.22 REMARK 500 MET A 857 -98.73 -128.51 REMARK 500 TYR A 858 26.36 -62.59 REMARK 500 GLU A 860 -76.61 -83.36 REMARK 500 ASP A 861 -35.39 -30.71 REMARK 500 VAL A 865 79.87 -61.98 REMARK 500 GLN A 869 110.24 55.41 REMARK 500 HIS A 872 -77.85 -41.11 REMARK 500 MET A 874 13.61 -153.07 REMARK 500 GLU A 878 -39.53 -132.62 REMARK 500 PHE A 883 -84.79 -49.71 REMARK 500 GLU A 884 91.14 -67.02 REMARK 500 CYS A 888 -3.77 -152.05 REMARK 500 ASP A 951 -63.09 -10.88 REMARK 500 LYS A 958 62.87 68.65 REMARK 500 SER A 974 -61.91 -90.52 REMARK 500 LEU A 992 -28.41 -146.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 1002 REMARK 610 PTY A 1003 REMARK 610 PTY A 1004 REMARK 610 PTY A 1005 REMARK 610 PTY A 1006 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 711 O REMARK 620 2 LYS A 712 O 72.5 REMARK 620 3 ALA A 714 O 84.4 78.1 REMARK 620 4 HOH A1111 O 158.9 86.5 89.5 REMARK 620 5 HOH A1112 O 98.7 91.8 168.1 83.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W5A RELATED DB: PDB REMARK 900 RELATED ID: 3W5B RELATED DB: PDB REMARK 900 RELATED ID: 3W5D RELATED DB: PDB DBREF 3W5C A 1 994 UNP B6CAM1 B6CAM1_RABIT 1 994 SEQADV 3W5C ACE A 0 UNP B6CAM1 ACETYLATION SEQRES 1 A 995 ACE MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS SEQRES 2 A 995 LEU ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR SEQRES 3 A 995 PRO ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS SEQRES 4 A 995 ASN GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU SEQRES 5 A 995 LEU VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE SEQRES 6 A 995 LEU LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP SEQRES 7 A 995 PHE GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU SEQRES 8 A 995 PRO PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE SEQRES 9 A 995 VAL GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE SEQRES 10 A 995 GLU ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL SEQRES 11 A 995 TYR ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA SEQRES 12 A 995 ARG ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL SEQRES 13 A 995 GLY ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE SEQRES 14 A 995 LYS SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR SEQRES 15 A 995 GLY GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL SEQRES 16 A 995 PRO ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET SEQRES 17 A 995 LEU PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU SEQRES 18 A 995 GLY ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY SEQRES 19 A 995 LYS ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS SEQRES 20 A 995 THR PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN SEQRES 21 A 995 LEU SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP SEQRES 22 A 995 LEU ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY SEQRES 23 A 995 GLY SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE SEQRES 24 A 995 ALA VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU SEQRES 25 A 995 PRO ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG SEQRES 26 A 995 ARG MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SEQRES 27 A 995 SER VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER SEQRES 28 A 995 ASP LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL SEQRES 29 A 995 CYS LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE SEQRES 30 A 995 CYS SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR SEQRES 31 A 995 ALA PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE SEQRES 32 A 995 ARG SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR SEQRES 33 A 995 ILE CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN SEQRES 34 A 995 GLU THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR SEQRES 35 A 995 GLU THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL SEQRES 36 A 995 PHE ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG SEQRES 37 A 995 ALA ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS SEQRES 38 A 995 LYS GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER SEQRES 39 A 995 MET SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA SEQRES 40 A 995 ALA VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU SEQRES 41 A 995 GLY VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR SEQRES 42 A 995 THR ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE SEQRES 43 A 995 LEU SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR SEQRES 44 A 995 LEU ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO SEQRES 45 A 995 LYS ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE SEQRES 46 A 995 MET GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL SEQRES 47 A 995 GLY MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER SEQRES 48 A 995 ILE GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET SEQRES 49 A 995 ILE THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS SEQRES 50 A 995 ARG ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA SEQRES 51 A 995 ASP ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO SEQRES 52 A 995 LEU ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS SEQRES 53 A 995 PHE ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL SEQRES 54 A 995 GLU TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR SEQRES 55 A 995 GLY ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA SEQRES 56 A 995 GLU ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA SEQRES 57 A 995 LYS THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SEQRES 58 A 995 SER THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE SEQRES 59 A 995 TYR ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SEQRES 60 A 995 SER ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA SEQRES 61 A 995 ALA LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU SEQRES 62 A 995 LEU TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR SEQRES 63 A 995 ALA LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP SEQRES 64 A 995 ARG PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY SEQRES 65 A 995 TRP LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL SEQRES 66 A 995 GLY ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET SEQRES 67 A 995 TYR ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU SEQRES 68 A 995 THR HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE SEQRES 69 A 995 GLU GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO SEQRES 70 A 995 MET THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET SEQRES 71 A 995 CYS ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU SEQRES 72 A 995 MET ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SEQRES 73 A 995 SER ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU SEQRES 74 A 995 TYR VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA SEQRES 75 A 995 LEU ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER SEQRES 76 A 995 LEU PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE SEQRES 77 A 995 ALA ARG ASN TYR LEU GLU GLY HET ACE A 0 3 HET NA A1001 1 HET PTY A1002 19 HET PTY A1003 19 HET PTY A1004 19 HET PTY A1005 19 HET PTY A1006 19 HETNAM ACE ACETYL GROUP HETNAM NA SODIUM ION HETNAM PTY PHOSPHATIDYLETHANOLAMINE FORMUL 1 ACE C2 H4 O FORMUL 2 NA NA 1+ FORMUL 3 PTY 5(C40 H80 N O8 P) FORMUL 8 HOH *12(H2 O) HELIX 1 1 ALA A 3 LYS A 7 5 5 HELIX 2 2 SER A 8 GLY A 17 1 10 HELIX 3 3 THR A 25 GLY A 37 1 13 HELIX 4 4 SER A 48 GLN A 56 1 9 HELIX 5 5 ASP A 59 ALA A 76 1 18 HELIX 6 6 PHE A 88 ALA A 112 1 25 HELIX 7 7 ALA A 115 LYS A 120 1 6 HELIX 8 8 ARG A 143 ILE A 145 5 3 HELIX 9 9 GLN A 177 GLY A 182 1 6 HELIX 10 10 VAL A 200 LYS A 204 5 5 HELIX 11 11 THR A 226 SER A 229 5 4 HELIX 12 12 THR A 230 ALA A 241 1 12 HELIX 13 13 THR A 247 ASN A 275 1 29 HELIX 14 14 ILE A 276 ASP A 281 5 6 HELIX 15 15 SER A 287 ILE A 307 1 21 HELIX 16 16 GLY A 310 LYS A 328 1 19 HELIX 17 17 SER A 335 CYS A 344 1 10 HELIX 18 18 ARG A 403 GLN A 406 5 4 HELIX 19 19 PHE A 407 CYS A 420 1 14 HELIX 20 20 GLU A 439 ASN A 453 1 15 HELIX 21 21 GLU A 466 ALA A 468 5 3 HELIX 22 22 ASN A 469 LEU A 478 1 10 HELIX 23 23 ALA A 517 ARG A 524 1 8 HELIX 24 24 THR A 538 GLY A 555 1 18 HELIX 25 25 LYS A 572 MET A 576 5 5 HELIX 26 26 ASP A 580 SER A 582 5 3 HELIX 27 27 ARG A 583 GLU A 588 1 6 HELIX 28 28 GLU A 606 ALA A 617 1 12 HELIX 29 29 ASN A 628 ILE A 639 1 12 HELIX 30 30 GLY A 655 LEU A 661 1 7 HELIX 31 31 PRO A 662 ALA A 673 1 12 HELIX 32 32 SER A 682 SER A 693 1 12 HELIX 33 33 ASP A 703 ALA A 714 1 12 HELIX 34 34 THR A 724 ALA A 730 1 7 HELIX 35 35 ASN A 739 LEU A 781 1 43 HELIX 36 36 ILE A 788 VAL A 798 1 11 HELIX 37 37 ASP A 800 GLY A 808 1 9 HELIX 38 38 ASP A 815 ARG A 819 5 5 HELIX 39 39 GLY A 831 MET A 857 1 27 HELIX 40 40 CYS A 888 GLU A 892 5 5 HELIX 41 41 ALA A 893 ASN A 914 1 22 HELIX 42 42 PRO A 926 VAL A 929 5 4 HELIX 43 43 ASN A 930 VAL A 950 1 21 HELIX 44 44 ASP A 951 PHE A 957 1 7 HELIX 45 45 ASP A 963 LEU A 975 1 13 HELIX 46 46 LEU A 975 TYR A 991 1 17 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N SER A 167 O LEU A 220 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 LYS A 189 0 SHEET 2 B 3 LEU A 173 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ALA A 215 N ARG A 174 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 C 8 ARG A 620 THR A 625 1 O ILE A 624 N SER A 350 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 D 9 LYS A 400 PRO A 401 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O GLY A 598 N CYS A 364 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N LEU A 564 O GLY A 595 SHEET 7 D 9 LYS A 511 GLY A 516 -1 N GLY A 516 O ALA A 563 SHEET 8 D 9 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 9 D 9 MET A 479 SER A 488 -1 N LYS A 480 O SER A 499 SHEET 1 E 7 LYS A 400 PRO A 401 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O GLY A 598 N CYS A 364 SHEET 6 E 7 CYS A 525 VAL A 530 1 N TYR A 527 O PHE A 593 SHEET 7 E 7 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 F 2 SER A 424 PHE A 427 0 SHEET 2 F 2 TYR A 434 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.03 LINK C ACE A 0 N MET A 1 1555 1555 1.26 LINK O LEU A 711 NA NA A1001 1555 1555 2.66 LINK O LYS A 712 NA NA A1001 1555 1555 3.14 LINK O ALA A 714 NA NA A1001 1555 1555 2.40 LINK NA NA A1001 O HOH A1111 1555 1555 2.53 LINK NA NA A1001 O HOH A1112 1555 1555 2.46 SITE 1 AC1 6 LEU A 711 LYS A 712 ALA A 714 GLU A 732 SITE 2 AC1 6 HOH A1111 HOH A1112 SITE 1 AC2 3 GLN A 108 ALA A 313 THR A 316 SITE 1 AC3 3 PHE A 986 ARG A 989 ASN A 990 SITE 1 AC4 3 LEU A 273 ILE A 274 MET A 923 SITE 1 AC5 2 GLY A 831 PTY A1006 SITE 1 AC6 5 PHE A 945 TYR A 949 LEU A 964 TRP A 967 SITE 2 AC6 5 PTY A1005 CRYST1 71.226 71.226 586.236 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001706 0.00000 HETATM 1 C ACE A 0 66.111 -13.066 127.661 1.00 58.83 C HETATM 2 O ACE A 0 66.099 -14.230 128.028 1.00 57.86 O HETATM 3 CH3 ACE A 0 66.589 -12.705 126.283 1.00 56.74 C