HEADER ELECTRON TRANSPORT 06-FEB-13 3W5V TITLE CROSS-LINKED COMPLEX BETWEEN FERREDOXIN AND FERREDOXIN-NADP+ REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 42-355; COMPND 5 SYNONYM: FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, COMPND 6 FERREDOXINFERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, UNCHARACTERIZED COMPND 7 PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: FERREDOXIN-1, CHLOROPLASTIC; COMPND 12 CHAIN: B, D; COMPND 13 FRAGMENT: UNP RESIDUES 53-150; COMPND 14 SYNONYM: FERREDOXIN I, FD I; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: L-FNRI, ZEAMMB73_343560; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 11 ORGANISM_COMMON: MAIZE; SOURCE 12 ORGANISM_TAXID: 4577; SOURCE 13 GENE: FDX1, PFD1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ELECTRON TRANSFER COMPLEX, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIMATA-ARIGA,H.KUBOTA-KAWAI,N.MURAKI,T.HASE,G.KURISU REVDAT 3 30-OCT-24 3W5V 1 REMARK REVDAT 2 08-NOV-23 3W5V 1 REMARK SEQADV LINK REVDAT 1 19-JUN-13 3W5V 0 JRNL AUTH Y.KIMATA-ARIGA,H.KUBOTA-KAWAI,Y.-H.LEE,N.MURAKI,T.IKEGAMI, JRNL AUTH 2 G.KURISU,T.HASE JRNL TITL CONCENTRATION-DEPENDENT OLIGOMERIZATION OF CROSS-LINKED JRNL TITL 2 COMPLEXES BETWEEN FERREDOXIN AND FERREDOXIN-NADP(+) JRNL TITL 3 REDUCTASE JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 434 867 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23618857 JRNL DOI 10.1016/J.BBRC.2013.04.033 REMARK 2 REMARK 2 RESOLUTION. 3.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.5870 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.6500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.827 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.920 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 73.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6430 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8708 ; 1.361 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 782 ; 6.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;37.739 ;25.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1124 ;17.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4820 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000095924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13803 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GAW, 3B2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 20% ETHYLENE GLYCOL, REMARK 280 100MM BIS-TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.17250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 LYS A 17 REMARK 465 GLY B 97 REMARK 465 ALA B 98 REMARK 465 ILE C 1 REMARK 465 ARG C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 ALA C 5 REMARK 465 SER C 6 REMARK 465 ALA C 7 REMARK 465 VAL C 8 REMARK 465 GLU C 9 REMARK 465 ALA C 10 REMARK 465 PRO C 11 REMARK 465 ALA C 12 REMARK 465 THR C 13 REMARK 465 ALA C 14 REMARK 465 LYS C 15 REMARK 465 ALA C 16 REMARK 465 LYS C 17 REMARK 465 GLY D 97 REMARK 465 ALA D 98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 47 FE1 FES B 101 1.79 REMARK 500 SG CYS B 44 FE2 FES B 101 1.83 REMARK 500 O LEU C 94 C9A FAD C 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 19 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 23 109.52 -58.82 REMARK 500 ASN A 45 92.65 172.03 REMARK 500 GLU A 56 115.31 72.23 REMARK 500 PRO A 69 74.20 -68.96 REMARK 500 GLU A 72 109.91 -44.80 REMARK 500 THR A 172 20.52 -73.87 REMARK 500 ASN A 195 42.91 -167.55 REMARK 500 TYR A 212 12.59 54.24 REMARK 500 GLU A 236 5.02 -155.90 REMARK 500 LYS A 255 -16.18 -46.64 REMARK 500 GLU A 256 -80.11 -72.63 REMARK 500 LYS A 300 -71.41 -59.56 REMARK 500 LYS A 301 -58.26 -27.03 REMARK 500 ASP A 307 19.54 53.46 REMARK 500 ILE B 8 79.93 -101.73 REMARK 500 ASP B 20 4.98 -66.21 REMARK 500 SER B 38 -78.01 -148.14 REMARK 500 ALA B 41 19.26 -151.32 REMARK 500 ASP B 60 15.91 96.95 REMARK 500 SER B 62 -6.27 -143.09 REMARK 500 GLN C 23 105.40 -59.16 REMARK 500 ASN C 45 93.14 173.52 REMARK 500 GLU C 56 118.79 69.25 REMARK 500 GLN C 74 -173.82 -67.66 REMARK 500 ILE C 127 102.10 -59.16 REMARK 500 VAL C 131 -72.25 -48.59 REMARK 500 ASN C 195 41.36 -161.84 REMARK 500 TYR C 212 11.89 53.93 REMARK 500 GLU C 236 1.48 -151.37 REMARK 500 LYS C 255 -11.94 -45.29 REMARK 500 GLU C 256 -78.15 -77.12 REMARK 500 LYS C 301 -58.19 -29.78 REMARK 500 ASP C 307 17.60 52.66 REMARK 500 LEU D 16 162.38 179.37 REMARK 500 ASP D 20 3.82 -67.10 REMARK 500 SER D 38 -81.95 -149.47 REMARK 500 ALA D 41 17.72 -150.42 REMARK 500 ASP D 60 12.76 97.38 REMARK 500 SER D 62 -9.08 -144.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 FES B 101 S1 86.8 REMARK 620 3 FES B 101 S2 116.1 91.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 77 SG REMARK 620 2 FES B 101 S1 88.1 REMARK 620 3 FES B 101 S2 109.5 92.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 39 SG REMARK 620 2 FES D 101 S1 77.5 REMARK 620 3 FES D 101 S2 116.4 93.6 REMARK 620 4 CYS D 44 SG 140.2 125.9 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 47 SG REMARK 620 2 FES D 101 S1 126.0 REMARK 620 3 FES D 101 S2 106.4 93.2 REMARK 620 4 CYS D 77 SG 126.8 80.4 118.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W5U RELATED DB: PDB REMARK 900 SIMILAR COMPLEX WITH A DISTINCT CROSS-LINKAGE REMARK 900 RELATED ID: 1GAW RELATED DB: PDB REMARK 900 FERREDOXIN-NADP+ REDUCTASE REMARK 900 RELATED ID: 3B2F RELATED DB: PDB REMARK 900 FERREDOXIN DBREF 3W5V A 1 314 UNP Q9SLP6 Q9SLP6_MAIZE 42 355 DBREF 3W5V B 1 98 UNP P27787 FER1_MAIZE 53 150 DBREF 3W5V C 1 314 UNP Q9SLP6 Q9SLP6_MAIZE 42 355 DBREF 3W5V D 1 98 UNP P27787 FER1_MAIZE 53 150 SEQADV 3W5V CYS A 19 UNP Q9SLP6 GLU 60 ENGINEERED MUTATION SEQADV 3W5V CYS B 70 UNP P27787 ALA 122 ENGINEERED MUTATION SEQADV 3W5V CYS C 19 UNP Q9SLP6 GLU 60 ENGINEERED MUTATION SEQADV 3W5V CYS D 70 UNP P27787 ALA 122 ENGINEERED MUTATION SEQRES 1 A 314 ILE ARG ALA GLN ALA SER ALA VAL GLU ALA PRO ALA THR SEQRES 2 A 314 ALA LYS ALA LYS LYS CYS SER LYS LYS GLN GLU GLU GLY SEQRES 3 A 314 VAL VAL THR ASN LEU TYR LYS PRO LYS GLU PRO TYR VAL SEQRES 4 A 314 GLY ARG CYS LEU LEU ASN THR LYS ILE THR GLY ASP ASP SEQRES 5 A 314 ALA PRO GLY GLU THR TRP HIS MET VAL PHE SER THR GLU SEQRES 6 A 314 GLY LYS ILE PRO TYR ARG GLU GLY GLN SER ILE GLY VAL SEQRES 7 A 314 ILE ALA ASP GLY VAL ASP LYS ASN GLY LYS PRO HIS LYS SEQRES 8 A 314 VAL ARG LEU TYR SER ILE ALA SER SER ALA ILE GLY ASP SEQRES 9 A 314 PHE GLY ASP SER LYS THR VAL SER LEU CYS VAL LYS ARG SEQRES 10 A 314 LEU ILE TYR THR ASN ASP ALA GLY GLU ILE VAL LYS GLY SEQRES 11 A 314 VAL CYS SER ASN PHE LEU CYS ASP LEU GLN PRO GLY ASP SEQRES 12 A 314 ASN VAL GLN ILE THR GLY PRO VAL GLY LYS GLU MET LEU SEQRES 13 A 314 MET PRO LYS ASP PRO ASN ALA THR ILE ILE MET LEU ALA SEQRES 14 A 314 THR GLY THR GLY ILE ALA PRO PHE ARG SER PHE LEU TRP SEQRES 15 A 314 LYS MET PHE PHE GLU LYS HIS ASP ASP TYR LYS PHE ASN SEQRES 16 A 314 GLY LEU GLY TRP LEU PHE LEU GLY VAL PRO THR SER SER SEQRES 17 A 314 SER LEU LEU TYR LYS GLU GLU PHE GLY LYS MET LYS GLU SEQRES 18 A 314 ARG ALA PRO GLU ASN PHE ARG VAL ASP TYR ALA VAL SER SEQRES 19 A 314 ARG GLU GLN THR ASN ALA ALA GLY GLU ARG MET TYR ILE SEQRES 20 A 314 GLN THR ARG MET ALA GLU TYR LYS GLU GLU LEU TRP GLU SEQRES 21 A 314 LEU LEU LYS LYS ASP ASN THR TYR VAL TYR MET CYS GLY SEQRES 22 A 314 LEU LYS GLY MET GLU LYS GLY ILE ASP ASP ILE MET VAL SEQRES 23 A 314 SER LEU ALA GLU LYS ASP GLY ILE ASP TRP PHE ASP TYR SEQRES 24 A 314 LYS LYS GLN LEU LYS ARG GLY ASP GLN TRP ASN VAL GLU SEQRES 25 A 314 VAL TYR SEQRES 1 B 98 ALA THR TYR ASN VAL LYS LEU ILE THR PRO GLU GLY GLU SEQRES 2 B 98 VAL GLU LEU GLN VAL PRO ASP ASP VAL TYR ILE LEU ASP SEQRES 3 B 98 GLN ALA GLU GLU ASP GLY ILE ASP LEU PRO TYR SER CYS SEQRES 4 B 98 ARG ALA GLY SER CYS SER SER CYS ALA GLY LYS VAL VAL SEQRES 5 B 98 SER GLY SER VAL ASP GLN SER ASP GLN SER TYR LEU ASP SEQRES 6 B 98 ASP GLY GLN ILE CYS ASP GLY TRP VAL LEU THR CYS HIS SEQRES 7 B 98 ALA TYR PRO THR SER ASP VAL VAL ILE GLU THR HIS LYS SEQRES 8 B 98 GLU GLU GLU LEU THR GLY ALA SEQRES 1 C 314 ILE ARG ALA GLN ALA SER ALA VAL GLU ALA PRO ALA THR SEQRES 2 C 314 ALA LYS ALA LYS LYS CYS SER LYS LYS GLN GLU GLU GLY SEQRES 3 C 314 VAL VAL THR ASN LEU TYR LYS PRO LYS GLU PRO TYR VAL SEQRES 4 C 314 GLY ARG CYS LEU LEU ASN THR LYS ILE THR GLY ASP ASP SEQRES 5 C 314 ALA PRO GLY GLU THR TRP HIS MET VAL PHE SER THR GLU SEQRES 6 C 314 GLY LYS ILE PRO TYR ARG GLU GLY GLN SER ILE GLY VAL SEQRES 7 C 314 ILE ALA ASP GLY VAL ASP LYS ASN GLY LYS PRO HIS LYS SEQRES 8 C 314 VAL ARG LEU TYR SER ILE ALA SER SER ALA ILE GLY ASP SEQRES 9 C 314 PHE GLY ASP SER LYS THR VAL SER LEU CYS VAL LYS ARG SEQRES 10 C 314 LEU ILE TYR THR ASN ASP ALA GLY GLU ILE VAL LYS GLY SEQRES 11 C 314 VAL CYS SER ASN PHE LEU CYS ASP LEU GLN PRO GLY ASP SEQRES 12 C 314 ASN VAL GLN ILE THR GLY PRO VAL GLY LYS GLU MET LEU SEQRES 13 C 314 MET PRO LYS ASP PRO ASN ALA THR ILE ILE MET LEU ALA SEQRES 14 C 314 THR GLY THR GLY ILE ALA PRO PHE ARG SER PHE LEU TRP SEQRES 15 C 314 LYS MET PHE PHE GLU LYS HIS ASP ASP TYR LYS PHE ASN SEQRES 16 C 314 GLY LEU GLY TRP LEU PHE LEU GLY VAL PRO THR SER SER SEQRES 17 C 314 SER LEU LEU TYR LYS GLU GLU PHE GLY LYS MET LYS GLU SEQRES 18 C 314 ARG ALA PRO GLU ASN PHE ARG VAL ASP TYR ALA VAL SER SEQRES 19 C 314 ARG GLU GLN THR ASN ALA ALA GLY GLU ARG MET TYR ILE SEQRES 20 C 314 GLN THR ARG MET ALA GLU TYR LYS GLU GLU LEU TRP GLU SEQRES 21 C 314 LEU LEU LYS LYS ASP ASN THR TYR VAL TYR MET CYS GLY SEQRES 22 C 314 LEU LYS GLY MET GLU LYS GLY ILE ASP ASP ILE MET VAL SEQRES 23 C 314 SER LEU ALA GLU LYS ASP GLY ILE ASP TRP PHE ASP TYR SEQRES 24 C 314 LYS LYS GLN LEU LYS ARG GLY ASP GLN TRP ASN VAL GLU SEQRES 25 C 314 VAL TYR SEQRES 1 D 98 ALA THR TYR ASN VAL LYS LEU ILE THR PRO GLU GLY GLU SEQRES 2 D 98 VAL GLU LEU GLN VAL PRO ASP ASP VAL TYR ILE LEU ASP SEQRES 3 D 98 GLN ALA GLU GLU ASP GLY ILE ASP LEU PRO TYR SER CYS SEQRES 4 D 98 ARG ALA GLY SER CYS SER SER CYS ALA GLY LYS VAL VAL SEQRES 5 D 98 SER GLY SER VAL ASP GLN SER ASP GLN SER TYR LEU ASP SEQRES 6 D 98 ASP GLY GLN ILE CYS ASP GLY TRP VAL LEU THR CYS HIS SEQRES 7 D 98 ALA TYR PRO THR SER ASP VAL VAL ILE GLU THR HIS LYS SEQRES 8 D 98 GLU GLU GLU LEU THR GLY ALA HET FAD A 401 53 HET FES B 101 4 HET FAD C 401 53 HET FES D 101 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 5 FAD 2(C27 H33 N9 O15 P2) FORMUL 6 FES 2(FE2 S2) HELIX 1 1 GLY A 130 ASP A 138 1 9 HELIX 2 2 ILE A 174 PHE A 186 1 13 HELIX 3 3 TYR A 212 ALA A 223 1 12 HELIX 4 4 TYR A 246 GLU A 253 1 8 HELIX 5 5 TYR A 254 LEU A 262 1 9 HELIX 6 6 GLY A 276 GLU A 290 1 15 HELIX 7 7 ASP A 295 GLY A 306 1 12 HELIX 8 8 TYR B 23 ASP B 31 1 9 HELIX 9 9 ASP B 65 CYS B 70 1 6 HELIX 10 10 CYS B 77 ALA B 79 5 3 HELIX 11 11 LYS B 91 THR B 96 1 6 HELIX 12 12 GLY C 130 ASP C 138 1 9 HELIX 13 13 ILE C 174 PHE C 186 1 13 HELIX 14 14 TYR C 212 ALA C 223 1 12 HELIX 15 15 TYR C 246 GLU C 253 1 8 HELIX 16 16 TYR C 254 LEU C 262 1 9 HELIX 17 17 GLY C 276 GLU C 290 1 15 HELIX 18 18 ASP C 295 GLY C 306 1 12 HELIX 19 19 TYR D 23 ASP D 31 1 9 HELIX 20 20 ASP D 65 ASP D 71 1 7 HELIX 21 21 CYS D 77 ALA D 79 5 3 HELIX 22 22 LYS D 91 THR D 96 1 6 SHEET 1 A 6 THR A 46 LYS A 47 0 SHEET 2 A 6 THR A 57 SER A 63 -1 O HIS A 59 N THR A 46 SHEET 3 A 6 TYR A 38 CYS A 42 -1 N ARG A 41 O SER A 63 SHEET 4 A 6 ASN A 144 VAL A 151 -1 O ILE A 147 N TYR A 38 SHEET 5 A 6 SER A 75 ILE A 79 -1 N GLY A 77 O THR A 148 SHEET 6 A 6 ARG A 93 SER A 96 -1 O TYR A 95 N ILE A 76 SHEET 1 B 3 THR A 46 LYS A 47 0 SHEET 2 B 3 THR A 57 SER A 63 -1 O HIS A 59 N THR A 46 SHEET 3 B 3 THR A 110 LYS A 116 -1 O LEU A 113 N MET A 60 SHEET 1 C 2 ILE A 119 THR A 121 0 SHEET 2 C 2 ILE A 127 LYS A 129 -1 O VAL A 128 N TYR A 120 SHEET 1 D 5 PHE A 227 VAL A 233 0 SHEET 2 D 5 LEU A 197 VAL A 204 1 N GLY A 198 O ARG A 228 SHEET 3 D 5 THR A 164 THR A 170 1 N MET A 167 O PHE A 201 SHEET 4 D 5 THR A 267 LEU A 274 1 O TYR A 270 N ILE A 166 SHEET 5 D 5 TRP A 309 TYR A 314 1 O ASN A 310 N MET A 271 SHEET 1 E 5 GLY B 12 PRO B 19 0 SHEET 2 E 5 THR B 2 THR B 9 -1 N LEU B 7 O VAL B 14 SHEET 3 E 5 VAL B 85 GLU B 88 1 O ILE B 87 N ILE B 8 SHEET 4 E 5 ALA B 48 SER B 53 -1 N VAL B 52 O VAL B 86 SHEET 5 E 5 TRP B 73 LEU B 75 -1 O VAL B 74 N GLY B 49 SHEET 1 F 2 VAL B 56 ASP B 57 0 SHEET 2 F 2 TYR B 80 PRO B 81 -1 O TYR B 80 N ASP B 57 SHEET 1 G 6 THR C 46 LYS C 47 0 SHEET 2 G 6 THR C 57 SER C 63 -1 O HIS C 59 N THR C 46 SHEET 3 G 6 TYR C 38 CYS C 42 -1 N ARG C 41 O SER C 63 SHEET 4 G 6 ASN C 144 VAL C 151 -1 O VAL C 145 N GLY C 40 SHEET 5 G 6 SER C 75 ILE C 79 -1 N GLY C 77 O THR C 148 SHEET 6 G 6 ARG C 93 SER C 96 -1 O TYR C 95 N ILE C 76 SHEET 1 H 3 THR C 46 LYS C 47 0 SHEET 2 H 3 THR C 57 SER C 63 -1 O HIS C 59 N THR C 46 SHEET 3 H 3 THR C 110 LYS C 116 -1 O VAL C 111 N PHE C 62 SHEET 1 I 2 ILE C 119 THR C 121 0 SHEET 2 I 2 ILE C 127 LYS C 129 -1 O VAL C 128 N TYR C 120 SHEET 1 J 5 PHE C 227 VAL C 233 0 SHEET 2 J 5 LEU C 197 VAL C 204 1 N GLY C 198 O ARG C 228 SHEET 3 J 5 THR C 164 THR C 170 1 N MET C 167 O PHE C 201 SHEET 4 J 5 THR C 267 LEU C 274 1 O TYR C 268 N THR C 164 SHEET 5 J 5 TRP C 309 TYR C 314 1 O ASN C 310 N MET C 271 SHEET 1 K 5 GLY D 12 PRO D 19 0 SHEET 2 K 5 THR D 2 THR D 9 -1 N LEU D 7 O VAL D 14 SHEET 3 K 5 VAL D 85 THR D 89 1 O ILE D 87 N ILE D 8 SHEET 4 K 5 ALA D 48 SER D 53 -1 N VAL D 52 O VAL D 86 SHEET 5 K 5 TRP D 73 LEU D 75 -1 O VAL D 74 N GLY D 49 SHEET 1 L 2 VAL D 56 ASP D 57 0 SHEET 2 L 2 TYR D 80 PRO D 81 -1 O TYR D 80 N ASP D 57 SSBOND 1 CYS A 19 CYS D 70 1555 1555 2.02 SSBOND 2 CYS B 70 CYS C 19 1555 1555 2.03 LINK SG CYS B 39 FE2 FES B 101 1555 1555 1.96 LINK SG CYS B 77 FE1 FES B 101 1555 1555 2.35 LINK SG CYS D 39 FE2 FES D 101 1555 1555 2.15 LINK SG CYS D 44 FE2 FES D 101 1555 1555 1.91 LINK SG CYS D 47 FE1 FES D 101 1555 1555 1.95 LINK SG CYS D 77 FE1 FES D 101 1555 1555 2.61 CISPEP 1 GLY A 149 PRO A 150 0 -1.95 CISPEP 2 GLY C 149 PRO C 150 0 -1.62 SITE 1 AC1 15 ARG A 93 LEU A 94 TYR A 95 SER A 96 SITE 2 AC1 15 CYS A 114 LYS A 116 LEU A 118 TYR A 120 SITE 3 AC1 15 GLY A 130 VAL A 131 CYS A 132 SER A 133 SITE 4 AC1 15 THR A 172 TYR A 314 SER B 38 SITE 1 AC2 9 SER B 38 CYS B 39 ARG B 40 GLY B 42 SITE 2 AC2 9 SER B 43 CYS B 44 CYS B 47 LEU B 75 SITE 3 AC2 9 CYS B 77 SITE 1 AC3 17 GLY A 242 ARG A 244 ARG C 93 LEU C 94 SITE 2 AC3 17 TYR C 95 SER C 96 CYS C 114 VAL C 115 SITE 3 AC3 17 LYS C 116 LEU C 118 TYR C 120 GLY C 130 SITE 4 AC3 17 VAL C 131 CYS C 132 SER C 133 THR C 172 SITE 5 AC3 17 TYR C 314 SITE 1 AC4 9 SER D 38 CYS D 39 ARG D 40 GLY D 42 SITE 2 AC4 9 SER D 43 CYS D 44 CYS D 47 LEU D 75 SITE 3 AC4 9 CYS D 77 CRYST1 75.170 120.345 84.577 90.00 109.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013303 0.000000 0.004764 0.00000 SCALE2 0.000000 0.008309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012559 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.900585 -0.360692 0.242586 -93.40076 1 MTRIX2 2 -0.323557 0.183576 -0.928230 33.09570 1 MTRIX3 2 0.290273 -0.914440 -0.282030 74.35553 1